Wall clock time and date at job start Mon Mar 30 2020 03:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48497 * 109.46743 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47393 * 300.00181 * 3 2 1 6 6 H 1.48502 * 109.46918 * 60.00427 * 3 2 1 7 7 C 1.37880 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99898 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99781 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.63138 * 300.70050 * 9 7 2 11 11 C 1.55137 * 110.85562 * 63.91221 * 9 7 2 12 12 C 1.54906 * 101.65340 * 154.10145 * 11 9 7 13 13 N 1.47840 * 104.79740 * 322.92990 * 12 11 9 14 14 C 1.46900 * 110.99992 * 146.36180 * 13 12 11 15 15 C 1.52997 * 109.47398 * 69.15716 * 14 13 12 16 16 H 1.09006 * 109.52336 * 59.86440 * 15 14 13 17 17 C 1.53139 * 109.52930 * 179.97438 * 15 14 13 18 18 O 1.43075 * 109.15340 * 175.21468 * 17 15 14 19 19 C 1.43075 * 113.59156 * 302.04810 * 18 17 15 20 20 C 1.53144 * 109.14942 * 57.95359 * 19 18 17 21 21 O 1.43075 * 109.52252 * 299.67424 * 15 14 13 22 22 C 1.47441 * 108.56515 * 24.09695 * 13 12 11 23 23 H 0.97005 * 119.99952 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.99327 * 272.19768 * 11 9 7 25 25 H 1.08999 * 110.99116 * 36.01231 * 11 9 7 26 26 H 1.09005 * 110.37603 * 204.09846 * 12 11 9 27 27 H 1.08999 * 110.46469 * 81.80868 * 12 11 9 28 28 H 1.09000 * 109.47426 * 189.16128 * 14 13 12 29 29 H 1.09007 * 109.47368 * 309.15820 * 14 13 12 30 30 H 1.08997 * 109.52445 * 295.11963 * 17 15 14 31 31 H 1.08999 * 109.52067 * 55.31400 * 17 15 14 32 32 H 1.09002 * 109.52428 * 177.85294 * 19 18 17 33 33 H 1.09005 * 109.52601 * 298.05151 * 19 18 17 34 34 H 1.08998 * 109.52728 * 64.59420 * 20 19 18 35 35 H 1.09013 * 109.52033 * 184.78531 * 20 19 18 36 36 H 1.09008 * 109.88448 * 239.60068 * 22 13 12 37 37 H 1.08994 * 109.89300 * 118.41851 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6082 -2.5715 0.8768 11 6 0.4222 -2.6584 -1.3023 12 6 0.3178 -4.1994 -1.4202 13 7 1.6260 -4.7035 -0.9512 14 6 1.4770 -5.9911 -0.2600 15 6 1.0887 -7.0712 -1.2717 16 1 1.8647 -7.1533 -2.0328 17 6 0.9336 -8.4143 -0.5525 18 8 0.4626 -9.3935 -1.4833 19 6 -0.7802 -9.0455 -2.1008 20 6 -0.6250 -7.7024 -2.8200 21 8 -0.1539 -6.7229 -1.8896 22 6 2.2271 -3.6928 -0.0617 23 1 -0.4850 0.8401 0.0004 24 1 -0.5642 -2.2072 -1.1948 25 1 0.9518 -2.2365 -2.1564 26 1 0.1486 -4.4901 -2.4571 27 1 -0.4840 -4.5767 -0.7855 28 1 2.4207 -6.2602 0.2145 29 1 0.6993 -5.9081 0.4993 30 1 1.8980 -8.7265 -0.1520 31 1 0.2162 -8.3108 0.2616 32 1 -1.0569 -9.8149 -2.8216 33 1 -1.5552 -8.9632 -1.3387 34 1 0.0922 -7.8058 -3.6342 35 1 -1.5896 -7.3901 -3.2206 36 1 3.1861 -3.3674 -0.4650 37 1 2.3644 -4.1110 0.9354 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690651240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:16 Heat of formation + Delta-G solvation = -108.733650 kcal Electronic energy + Delta-G solvation = -18053.718025 eV Core-core repulsion = 15216.063060 eV Total energy + Delta-G solvation = -2837.654965 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01183 -39.48913 -36.97102 -35.26013 -33.64694 -31.35030 -30.03116 -29.19095 -26.97158 -25.63155 -23.94676 -22.02822 -21.61364 -21.29605 -18.58101 -17.82712 -17.59538 -17.12378 -16.68105 -16.42126 -16.28938 -15.57505 -15.46527 -14.70841 -14.37975 -14.26142 -13.97192 -13.39942 -13.27662 -13.00441 -12.89124 -12.65896 -12.39120 -12.36427 -12.25334 -11.99911 -11.66085 -11.45382 -11.25883 -11.09632 -10.88000 -10.49274 -10.06396 -9.14643 -8.13732 -6.23824 1.40851 1.42456 1.54452 2.43244 2.73537 2.77958 3.11314 3.17754 3.75382 3.91548 4.03803 4.10617 4.19725 4.24709 4.27861 4.47250 4.51446 4.59245 4.61899 4.63639 4.67398 4.79153 4.90605 4.97006 5.03150 5.06319 5.29672 5.41277 5.58890 5.73054 5.88500 5.99665 6.14835 6.19069 6.32582 6.36103 6.85488 7.43886 8.96059 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.062055 B = 0.004904 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.106403 B = 5707.776614 C = 5973.503384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.011 3.989 3 Si 0.958 3.042 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.025 3.975 10 H -0.004 1.004 11 C -0.101 4.101 12 C 0.075 3.925 13 N -0.533 5.533 14 C 0.058 3.942 15 C 0.066 3.934 16 H 0.068 0.932 17 C 0.036 3.964 18 O -0.395 6.395 19 C 0.023 3.977 20 C 0.018 3.982 21 O -0.390 6.390 22 C 0.058 3.942 23 H 0.260 0.740 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.106 0.894 29 H 0.033 0.967 30 H 0.124 0.876 31 H 0.061 0.939 32 H 0.126 0.874 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.117 0.883 36 H 0.064 0.936 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.298 -17.115 -3.167 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.076 0.924 9 C 0.006 3.994 10 H 0.015 0.985 11 C -0.140 4.140 12 C -0.052 4.052 13 N -0.257 5.257 14 C -0.070 4.070 15 C 0.007 3.993 16 H 0.086 0.914 17 C -0.041 4.041 18 O -0.314 6.314 19 C -0.053 4.053 20 C -0.059 4.059 21 O -0.310 6.310 22 C -0.069 4.069 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.124 0.876 29 H 0.051 0.949 30 H 0.142 0.858 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.083 0.917 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.109 -17.104 -3.583 17.476 hybrid contribution -0.479 1.355 0.721 1.608 sum -0.588 -15.749 -2.863 16.018 Atomic orbital electron populations 1.70110 1.07399 1.27213 1.51384 1.25800 0.95666 1.02617 0.94665 0.85504 0.79182 0.79441 0.77536 1.18850 1.20716 1.20603 1.21483 0.93040 0.91570 1.50620 0.92428 1.19785 0.93253 0.93295 0.93072 0.98550 1.22472 0.99292 0.93711 0.98544 1.22793 0.89186 0.93491 0.99755 1.63566 1.22500 1.02891 1.36776 1.22342 1.01328 0.89215 0.94136 1.22737 0.86769 0.94132 0.95622 0.91365 1.23252 1.02075 0.87575 0.91212 1.88048 1.39562 1.44496 1.59261 1.23399 0.85985 0.97847 0.98080 1.23399 1.01566 0.89071 0.91832 1.88229 1.38665 1.44883 1.59207 1.22784 0.98433 0.91668 0.94052 0.93080 0.93861 0.94408 0.90883 0.94947 0.87577 0.94919 0.85781 0.92027 0.85570 0.92050 0.92273 0.86536 0.91734 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.75 12.30 21.45 0.26 -54.49 16 2 C 0.01 0.63 5.35 84.65 0.45 1.08 16 3 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.53 -29.79 8.49 25.60 0.22 -29.57 16 8 H 0.06 3.16 7.55 -2.91 -0.02 3.14 16 9 C 0.03 1.31 2.81 -10.36 -0.03 1.29 16 10 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 11 C -0.10 -5.07 5.85 31.98 0.19 -4.88 16 12 C 0.08 3.10 5.02 86.77 0.44 3.53 16 13 N -0.53 -20.32 5.16 -885.55 -4.57 -24.90 16 14 C 0.06 1.73 4.45 86.30 0.38 2.11 16 15 C 0.07 1.71 3.09 30.64 0.09 1.81 16 16 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 17 C 0.04 0.76 6.34 72.03 0.46 1.21 16 18 O -0.39 -8.80 10.85 -136.02 -1.48 -10.28 16 19 C 0.02 0.42 7.05 72.03 0.51 0.93 16 20 C 0.02 0.37 7.05 72.03 0.51 0.88 16 21 O -0.39 -11.14 7.53 -136.02 -1.02 -12.17 16 22 C 0.06 2.47 6.45 86.65 0.56 3.03 16 23 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 24 H 0.04 2.33 7.65 -2.39 -0.02 2.31 16 25 H 0.04 1.96 8.05 -2.39 -0.02 1.94 16 26 H 0.07 2.89 7.40 -2.38 -0.02 2.87 16 27 H 0.03 1.34 7.25 -2.39 -0.02 1.33 16 28 H 0.11 2.63 8.03 -2.39 -0.02 2.61 16 29 H 0.03 1.02 7.85 -2.38 -0.02 1.00 16 30 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.06 2.81 7.65 -2.38 -0.02 2.79 16 37 H 0.05 1.87 7.55 -2.39 -0.02 1.85 16 Total: -1.00 -64.82 291.06 0.02 -64.80 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.03 Total: 9.34 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 3.77 Total: -18.58 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -4.31 Total: -79.38 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -2.50 Total: -22.45 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -64.82 0.02 -64.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690651240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.935 kcal (2) G-P(sol) polarization free energy of solvation -64.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds