Wall clock time and date at job start Mon Mar 30 2020 03:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00188 * 2 1 4 4 H 1.48499 * 109.47485 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47134 * 300.00438 * 3 2 1 6 6 H 1.48503 * 109.47154 * 60.00010 * 3 2 1 7 7 C 1.37881 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99919 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99439 * 359.97438 * 7 2 1 10 10 H 1.08994 * 110.29151 * 300.70084 * 9 7 2 11 11 C 1.54258 * 110.32243 * 62.83368 * 9 7 2 12 12 C 1.54385 * 105.06360 * 118.99654 * 11 9 7 13 13 N 1.48564 * 104.59217 * 23.84858 * 12 11 9 14 14 C 1.46901 * 110.99605 * 200.96692 * 13 12 11 15 15 C 1.52997 * 109.46879 * 175.80991 * 14 13 12 16 16 H 1.09001 * 109.52686 * 301.95420 * 15 14 13 17 17 C 1.53143 * 109.52533 * 181.82116 * 15 14 13 18 18 O 1.43073 * 109.15331 * 184.78351 * 17 15 14 19 19 C 1.43079 * 113.59227 * 57.95580 * 18 17 15 20 20 C 1.53150 * 109.14967 * 302.04635 * 19 18 17 21 21 O 1.43080 * 109.52427 * 62.08254 * 15 14 13 22 22 C 1.48560 * 104.21974 * 320.52068 * 13 12 11 23 23 H 0.97002 * 119.99573 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.32179 * 237.88927 * 11 9 7 25 25 H 1.08999 * 110.33018 * 359.97438 * 11 9 7 26 26 H 1.08999 * 110.41378 * 142.63028 * 12 11 9 27 27 H 1.08998 * 110.40380 * 265.07103 * 12 11 9 28 28 H 1.09001 * 109.46863 * 295.80449 * 14 13 12 29 29 H 1.08997 * 109.47457 * 55.80475 * 14 13 12 30 30 H 1.08997 * 109.52197 * 304.68627 * 17 15 14 31 31 H 1.09000 * 109.52329 * 64.81429 * 17 15 14 32 32 H 1.09000 * 109.52811 * 61.94365 * 19 18 17 33 33 H 1.08997 * 109.52485 * 182.08253 * 19 18 17 34 34 H 1.08993 * 109.52373 * 175.21542 * 20 19 18 35 35 H 1.09000 * 109.52207 * 295.34896 * 20 19 18 36 36 H 1.09008 * 110.41261 * 280.70111 * 22 13 12 37 37 H 1.09000 * 110.40519 * 158.26779 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6104 -2.5656 0.8787 11 6 0.4107 -2.6325 -1.2872 12 6 0.9569 -3.8914 -1.9945 13 7 1.5708 -4.6953 -0.9064 14 6 2.5474 -5.6514 -1.4451 15 6 3.2323 -6.3858 -0.2908 16 1 3.7148 -5.6621 0.3661 17 6 4.2828 -7.3501 -0.8492 18 8 4.8391 -8.1122 0.2262 19 6 3.8652 -8.8557 0.9651 20 6 2.8147 -7.8913 1.5235 21 8 2.2581 -7.1279 0.4489 22 6 2.2344 -3.6885 -0.0387 23 1 -0.4849 0.8401 0.0004 24 1 -0.6426 -2.7645 -1.0395 25 1 0.5428 -1.7539 -1.9186 26 1 0.1448 -4.4457 -2.4650 27 1 1.7087 -3.6157 -2.7341 28 1 2.0360 -6.3730 -2.0823 29 1 3.2953 -5.1162 -2.0301 30 1 3.8144 -8.0225 -1.5680 31 1 5.0726 -6.7830 -1.3419 32 1 3.3828 -9.5786 0.3072 33 1 4.3533 -9.3797 1.7867 34 1 2.0243 -8.4585 2.0151 35 1 3.2828 -7.2197 2.2432 36 1 3.1862 -3.3812 -0.4722 37 1 2.3843 -4.0902 0.9635 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690651242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:18 Heat of formation + Delta-G solvation = -86.948001 kcal Electronic energy + Delta-G solvation = -18024.884533 eV Core-core repulsion = 15188.174264 eV Total energy + Delta-G solvation = -2836.710268 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.94390 -37.92626 -35.91215 -33.59345 -32.11998 -29.94842 -28.34559 -27.80326 -25.43790 -24.30953 -22.61574 -21.10857 -20.11305 -19.18263 -16.84035 -16.49726 -16.40137 -15.92063 -15.36641 -15.13771 -14.77403 -14.56398 -13.86913 -13.42214 -13.12231 -12.63214 -12.45818 -12.16910 -11.93587 -11.52755 -11.08495 -11.05885 -10.94722 -10.67865 -10.60921 -10.44212 -10.25482 -10.08803 -9.70861 -9.26430 -9.05597 -8.69946 -8.37071 -7.74643 -6.00382 -4.04253 3.29344 3.37600 3.41059 3.63091 3.74964 4.37882 4.45357 4.76179 4.92082 5.00517 5.08767 5.15336 5.27017 5.32842 5.43155 5.50367 5.65048 5.67543 5.84995 5.92450 6.03007 6.10751 6.29989 6.42449 6.56023 6.86938 6.91386 7.14984 7.18536 7.23101 7.57058 7.70994 7.76534 7.91394 8.02936 8.48366 8.99256 9.59763 11.08964 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039508 B = 0.005279 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.552170 B = 5303.003541 C = 5501.491766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.048 3.952 10 H 0.034 0.966 11 C -0.091 4.091 12 C 0.031 3.969 13 N -0.505 5.505 14 C 0.054 3.946 15 C 0.060 3.940 16 H 0.071 0.929 17 C 0.030 3.970 18 O -0.381 6.381 19 C 0.023 3.977 20 C 0.022 3.978 21 O -0.354 6.354 22 C 0.040 3.960 23 H 0.259 0.741 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.032 0.968 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.097 -14.685 -1.278 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.052 0.948 11 C -0.130 4.130 12 C -0.097 4.097 13 N -0.229 5.229 14 C -0.075 4.075 15 C 0.001 3.999 16 H 0.089 0.911 17 C -0.047 4.047 18 O -0.300 6.300 19 C -0.053 4.053 20 C -0.056 4.056 21 O -0.272 6.272 22 C -0.087 4.087 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.544 -14.885 -0.992 15.915 hybrid contribution 1.072 1.344 -0.438 1.774 sum 6.616 -13.541 -1.430 15.139 Atomic orbital electron populations 1.70002 1.05843 1.26352 1.50272 1.24970 0.94824 0.98973 0.95174 0.86593 0.80137 0.84019 0.77582 1.19858 1.21071 1.21008 1.21237 0.92694 0.90474 1.50982 0.92741 1.19364 0.92440 0.90902 0.94402 0.94818 1.22196 0.98607 0.93691 0.98517 1.23205 0.97681 0.95649 0.93137 1.65424 1.27138 1.14360 1.15951 1.22152 0.94944 0.96052 0.94355 1.22809 0.89688 0.92867 0.94500 0.91133 1.23264 0.97738 0.94345 0.89346 1.88068 1.33088 1.62929 1.45937 1.23266 0.91458 0.94037 0.96586 1.23205 0.97500 0.94434 0.90420 1.88261 1.31986 1.62173 1.44796 1.23300 0.97052 0.92643 0.95726 0.93090 0.93584 0.91580 0.91986 0.95122 0.90633 0.93546 0.92173 0.87891 0.92346 0.88111 0.88010 0.92337 0.94939 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 12.46 55.43 0.69 -24.92 16 2 C 0.06 1.74 5.11 -17.82 -0.09 1.64 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.20 8.35 -34.44 -0.29 -14.48 16 8 H 0.05 1.48 7.57 -52.49 -0.40 1.09 16 9 C 0.05 1.23 2.96 -90.39 -0.27 0.96 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.09 -2.19 5.80 -25.35 -0.15 -2.34 16 12 C 0.03 0.62 6.49 -2.18 -0.01 0.60 16 13 N -0.50 -9.94 5.35 -229.97 -1.23 -11.17 16 14 C 0.05 0.85 4.59 -3.83 -0.02 0.84 16 15 C 0.06 0.88 2.69 -26.66 -0.07 0.81 16 16 H 0.07 1.14 6.85 -51.93 -0.36 0.78 16 17 C 0.03 0.37 6.34 37.23 0.24 0.61 16 18 O -0.38 -4.95 10.85 -48.75 -0.53 -5.48 16 19 C 0.02 0.25 7.05 37.23 0.26 0.51 16 20 C 0.02 0.26 7.05 37.23 0.26 0.52 16 21 O -0.35 -5.58 10.40 -48.75 -0.51 -6.09 16 22 C 0.04 0.87 4.89 -2.18 -0.01 0.86 16 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 24 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.07 1.70 7.33 -51.93 -0.38 1.32 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.03 0.58 7.91 -51.93 -0.41 0.17 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.69 7.97 -51.93 -0.41 0.28 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.03 0.70 7.53 -51.92 -0.39 0.31 16 37 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 LS Contribution 293.76 15.07 4.43 4.43 Total: -1.00 -30.26 293.76 -8.42 -38.68 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.11 Total: -2.23 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -0.15 Total: -9.47 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.54 Total: -36.09 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.04 Total: -11.56 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.26 -8.42 -38.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690651242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.268 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds