Wall clock time and date at job start Mon Mar 30 2020 03:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00188 * 2 1 4 4 H 1.48499 * 109.47485 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47134 * 300.00438 * 3 2 1 6 6 H 1.48503 * 109.47154 * 60.00010 * 3 2 1 7 7 C 1.37881 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99919 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99439 * 359.97438 * 7 2 1 10 10 H 1.08994 * 110.29151 * 300.70084 * 9 7 2 11 11 C 1.54258 * 110.32243 * 62.83368 * 9 7 2 12 12 C 1.54385 * 105.06360 * 118.99654 * 11 9 7 13 13 N 1.48564 * 104.59217 * 23.84858 * 12 11 9 14 14 C 1.46901 * 110.99605 * 200.96692 * 13 12 11 15 15 C 1.52997 * 109.46879 * 175.80991 * 14 13 12 16 16 H 1.09001 * 109.52686 * 301.95420 * 15 14 13 17 17 C 1.53143 * 109.52533 * 181.82116 * 15 14 13 18 18 O 1.43073 * 109.15331 * 184.78351 * 17 15 14 19 19 C 1.43079 * 113.59227 * 57.95580 * 18 17 15 20 20 C 1.53150 * 109.14967 * 302.04635 * 19 18 17 21 21 O 1.43080 * 109.52427 * 62.08254 * 15 14 13 22 22 C 1.48560 * 104.21974 * 320.52068 * 13 12 11 23 23 H 0.97002 * 119.99573 * 359.97438 * 1 2 3 24 24 H 1.09002 * 110.32179 * 237.88927 * 11 9 7 25 25 H 1.08999 * 110.33018 * 359.97438 * 11 9 7 26 26 H 1.08999 * 110.41378 * 142.63028 * 12 11 9 27 27 H 1.08998 * 110.40380 * 265.07103 * 12 11 9 28 28 H 1.09001 * 109.46863 * 295.80449 * 14 13 12 29 29 H 1.08997 * 109.47457 * 55.80475 * 14 13 12 30 30 H 1.08997 * 109.52197 * 304.68627 * 17 15 14 31 31 H 1.09000 * 109.52329 * 64.81429 * 17 15 14 32 32 H 1.09000 * 109.52811 * 61.94365 * 19 18 17 33 33 H 1.08997 * 109.52485 * 182.08253 * 19 18 17 34 34 H 1.08993 * 109.52373 * 175.21542 * 20 19 18 35 35 H 1.09000 * 109.52207 * 295.34896 * 20 19 18 36 36 H 1.09008 * 110.41261 * 280.70111 * 22 13 12 37 37 H 1.09000 * 110.40519 * 158.26779 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6104 -2.5656 0.8787 11 6 0.4107 -2.6325 -1.2872 12 6 0.9569 -3.8914 -1.9945 13 7 1.5708 -4.6953 -0.9064 14 6 2.5474 -5.6514 -1.4451 15 6 3.2323 -6.3858 -0.2908 16 1 3.7148 -5.6621 0.3661 17 6 4.2828 -7.3501 -0.8492 18 8 4.8391 -8.1122 0.2262 19 6 3.8652 -8.8557 0.9651 20 6 2.8147 -7.8913 1.5235 21 8 2.2581 -7.1279 0.4489 22 6 2.2344 -3.6885 -0.0387 23 1 -0.4849 0.8401 0.0004 24 1 -0.6426 -2.7645 -1.0395 25 1 0.5428 -1.7539 -1.9186 26 1 0.1448 -4.4457 -2.4650 27 1 1.7087 -3.6157 -2.7341 28 1 2.0360 -6.3730 -2.0823 29 1 3.2953 -5.1162 -2.0301 30 1 3.8144 -8.0225 -1.5680 31 1 5.0726 -6.7830 -1.3419 32 1 3.3828 -9.5786 0.3072 33 1 4.3533 -9.3797 1.7867 34 1 2.0243 -8.4585 2.0151 35 1 3.2828 -7.2197 2.2432 36 1 3.1862 -3.3812 -0.4722 37 1 2.3843 -4.0902 0.9635 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690651242.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:18 Heat of formation + Delta-G solvation = -108.470114 kcal Electronic energy + Delta-G solvation = -18025.817802 eV Core-core repulsion = 15188.174264 eV Total energy + Delta-G solvation = -2837.643537 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.00049 -39.52475 -36.97658 -35.34479 -33.66501 -31.43511 -29.97402 -29.09026 -26.99146 -25.86532 -23.85131 -22.31213 -21.74498 -20.95018 -18.42127 -17.85950 -17.47138 -17.13309 -16.69609 -16.56549 -16.22368 -16.05017 -15.38392 -14.82110 -14.37351 -14.14844 -14.01729 -13.69100 -13.14964 -12.95626 -12.83732 -12.61185 -12.53660 -12.24292 -12.20368 -11.99854 -11.70922 -11.57277 -11.22975 -11.16383 -10.78834 -10.49597 -10.08497 -9.29830 -8.13989 -6.25458 1.39959 1.41571 1.53100 2.41803 2.70231 2.77009 3.12757 3.17420 3.70699 3.86129 3.98964 4.07215 4.15107 4.20036 4.35230 4.38234 4.45750 4.55265 4.57363 4.60527 4.62841 4.78769 4.85621 4.90462 4.94890 5.05728 5.25459 5.33078 5.60242 5.74368 5.86451 5.95931 5.99762 6.11388 6.32450 6.40270 6.85828 7.42584 8.95543 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039508 B = 0.005279 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.552170 B = 5303.003541 C = 5501.491766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.054 0.946 9 C 0.038 3.962 10 H -0.007 1.007 11 C -0.085 4.085 12 C 0.042 3.958 13 N -0.515 5.515 14 C 0.053 3.947 15 C 0.061 3.939 16 H 0.050 0.950 17 C 0.036 3.964 18 O -0.398 6.398 19 C 0.024 3.976 20 C 0.015 3.985 21 O -0.381 6.381 22 C 0.058 3.942 23 H 0.261 0.739 24 H 0.028 0.972 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.049 0.951 36 H 0.034 0.966 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.479 -15.832 -2.119 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.019 3.981 10 H 0.011 0.989 11 C -0.123 4.123 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.075 4.075 15 C 0.002 3.998 16 H 0.068 0.932 17 C -0.041 4.041 18 O -0.317 6.317 19 C -0.052 4.052 20 C -0.061 4.061 21 O -0.301 6.301 22 C -0.070 4.070 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.088 0.912 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.938 -16.054 -1.833 17.585 hybrid contribution 0.594 1.652 -0.114 1.759 sum 7.533 -14.402 -1.948 16.369 Atomic orbital electron populations 1.70129 1.07364 1.27279 1.50981 1.25776 0.95640 1.02510 0.94696 0.85529 0.79079 0.79534 0.77651 1.19003 1.20450 1.20686 1.21538 0.92840 0.91640 1.51031 0.92756 1.19343 0.92996 0.92252 0.93522 0.98876 1.21984 0.97528 0.95039 0.97793 1.23092 0.98623 0.93873 0.92955 1.65375 1.28487 1.13973 1.16057 1.22268 0.94686 0.95449 0.95090 1.22766 0.90001 0.93158 0.93859 0.93203 1.23257 0.97395 0.94127 0.89297 1.88050 1.34116 1.63141 1.46348 1.23415 0.90913 0.93517 0.97347 1.23430 0.98670 0.94489 0.89558 1.88203 1.33271 1.62740 1.45864 1.22972 0.95977 0.91691 0.96312 0.92990 0.95338 0.93986 0.89785 0.93738 0.88867 0.92062 0.90711 0.86423 0.91212 0.85646 0.86096 0.93232 0.94745 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.36 12.46 21.45 0.27 -54.09 16 2 C 0.01 0.72 5.11 84.66 0.43 1.15 16 3 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.53 -29.84 8.35 25.60 0.21 -29.63 16 8 H 0.05 2.97 7.57 -2.91 -0.02 2.95 16 9 C 0.04 2.00 2.96 -10.65 -0.03 1.97 16 10 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 11 C -0.08 -4.14 5.80 31.49 0.18 -3.96 16 12 C 0.04 1.62 6.49 86.45 0.56 2.19 16 13 N -0.51 -19.73 5.35 -881.48 -4.72 -24.45 16 14 C 0.05 1.56 4.59 86.30 0.40 1.96 16 15 C 0.06 1.70 2.69 30.64 0.08 1.78 16 16 H 0.05 1.58 6.85 -2.39 -0.02 1.57 16 17 C 0.04 0.80 6.34 72.03 0.46 1.25 16 18 O -0.40 -9.36 10.85 -136.05 -1.48 -10.84 16 19 C 0.02 0.45 7.05 72.03 0.51 0.96 16 20 C 0.02 0.34 7.05 72.03 0.51 0.85 16 21 O -0.38 -11.54 10.40 -136.05 -1.41 -12.95 16 22 C 0.06 2.54 4.89 86.45 0.42 2.96 16 23 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 24 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.04 2.21 7.33 -2.39 -0.02 2.20 16 26 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.04 1.60 7.91 -2.39 -0.02 1.58 16 28 H 0.09 2.43 8.14 -2.39 -0.02 2.42 16 29 H 0.06 1.64 7.97 -2.39 -0.02 1.62 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.03 1.47 7.53 -2.38 -0.02 1.46 16 37 H 0.05 2.40 7.62 -2.39 -0.02 2.38 16 Total: -1.00 -65.69 293.76 -0.55 -66.25 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.03 Total: 8.71 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: 3.73 Total: -18.52 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -4.45 Total: -78.54 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -2.89 Total: -23.79 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -65.69 -0.55 -66.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690651242.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.222 kcal (2) G-P(sol) polarization free energy of solvation -65.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds