Wall clock time and date at job start Mon Mar 30 2020 04:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47233 * 2 1 4 4 C 1.53000 * 109.47040 * 120.00075 * 2 1 3 5 5 H 1.08998 * 110.54917 * 61.42724 * 4 2 1 6 6 C 1.54998 * 110.75321 * 184.39566 * 4 2 1 7 7 C 1.54812 * 102.09200 * 155.58942 * 6 4 2 8 8 H 1.08996 * 110.59799 * 97.85079 * 7 6 4 9 9 N 1.46499 * 110.48621 * 220.44612 * 7 6 4 10 10 C 1.46499 * 120.00225 * 56.21910 * 9 7 6 11 11 C 1.34780 * 119.99546 * 236.22472 * 9 7 6 12 12 O 1.21684 * 119.99943 * 359.97438 * 11 9 7 13 13 C 1.46377 * 119.99627 * 180.02562 * 11 9 7 14 14 H 1.08003 * 120.00016 * 359.97438 * 13 11 9 15 15 C 1.40041 * 119.99760 * 179.97438 * 13 11 9 16 16 N 1.30670 * 120.00203 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99891 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47248 * 90.00293 * 17 15 13 19 19 H 1.48500 * 109.47209 * 209.99938 * 17 15 13 20 20 H 1.48501 * 109.47337 * 330.00090 * 17 15 13 21 21 C 1.54099 * 104.18464 * 339.12101 * 7 6 4 22 22 O 1.43734 * 107.29820 * 357.97027 * 21 7 6 23 23 H 1.08996 * 109.47018 * 300.00123 * 1 2 3 24 24 H 1.08998 * 109.47178 * 59.99713 * 1 2 3 25 25 H 1.08994 * 109.46980 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47102 * 240.00231 * 2 1 3 27 27 H 1.09003 * 109.46888 * 60.00100 * 3 2 1 28 28 H 1.08993 * 109.47516 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47273 * 300.00229 * 3 2 1 30 30 H 1.09003 * 110.90225 * 37.38999 * 6 4 2 31 31 H 1.09001 * 110.90771 * 273.79064 * 6 4 2 32 32 H 1.09002 * 109.47391 * 270.00005 * 10 9 7 33 33 H 1.09001 * 109.46813 * 150.00061 * 10 9 7 34 34 H 1.09004 * 109.47041 * 30.00189 * 10 9 7 35 35 H 0.97006 * 120.00348 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.87653 * 117.39528 * 21 7 6 37 37 H 1.09003 * 109.87480 * 238.54045 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7074 -1.7592 1.2544 6 6 3.5856 -0.6431 1.3361 7 6 3.8343 -0.8158 2.8543 8 1 4.0908 -1.8496 3.0857 9 7 4.8950 0.0879 3.3062 10 6 4.7755 1.5300 3.0774 11 6 5.9809 -0.4074 3.9323 12 8 6.0800 -1.6052 4.1226 13 6 7.0406 0.4957 4.3843 14 1 6.9524 1.5588 4.2157 15 6 8.1686 -0.0189 5.0354 16 7 8.2755 -1.3052 5.2389 17 14 9.5212 1.1334 5.6116 18 1 9.2328 1.5813 6.9978 19 1 10.8240 0.4213 5.5825 20 1 9.5822 2.3139 4.7126 21 6 2.4891 -0.4357 3.5029 22 8 1.6008 -0.0406 2.4443 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 3.9461 0.3258 0.9906 31 1 4.0484 -1.4526 0.7715 32 1 5.2205 1.7834 2.1152 33 1 5.2946 2.0679 3.8707 34 1 3.7225 1.8117 3.0762 35 1 9.0571 -1.6617 5.6895 36 1 2.0767 -1.2950 4.0316 37 1 2.6329 0.3939 4.1952 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691470416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:33 Heat of formation + Delta-G solvation = -89.054464 kcal Electronic energy + Delta-G solvation = -18229.538091 eV Core-core repulsion = 15392.736479 eV Total energy + Delta-G solvation = -2836.801612 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.72463 -37.30110 -34.89368 -33.80472 -32.48024 -30.53592 -28.00573 -27.09198 -26.07566 -25.45616 -23.13834 -21.16627 -19.78685 -18.62512 -16.85209 -16.15845 -15.69185 -15.52541 -14.90086 -14.21849 -14.15057 -13.94963 -13.71467 -13.02600 -12.95191 -12.32869 -12.11442 -11.78709 -11.67909 -11.48308 -11.36131 -11.26874 -11.12486 -10.96184 -10.90653 -10.65109 -10.44355 -10.27906 -10.16668 -10.12319 -9.35170 -8.88274 -7.62812 -7.24831 -6.22718 -4.68351 3.11823 3.18971 3.22108 4.03748 4.13383 4.48231 4.49484 4.82197 4.94939 5.11556 5.21987 5.33813 5.52202 5.62458 5.69203 5.71051 5.75492 5.82523 5.94216 5.94375 6.03736 6.09266 6.12812 6.17824 6.26466 6.37225 6.46238 6.53946 6.54690 6.63243 7.21490 7.41718 7.59076 8.10417 8.32238 8.98923 9.37646 10.53401 10.72044 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.048725 B = 0.005641 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.519324 B = 4962.475372 C = 5202.428944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.147 4.147 4 C 0.080 3.920 5 H 0.065 0.935 6 C -0.165 4.165 7 C 0.120 3.880 8 H 0.103 0.897 9 N -0.637 5.637 10 C 0.100 3.900 11 C 0.555 3.445 12 O -0.579 6.579 13 C -0.542 4.542 14 H 0.073 0.927 15 C 0.087 3.913 16 N -0.767 5.767 17 Si 0.907 3.093 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.264 1.264 21 C 0.036 3.964 22 O -0.374 6.374 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.268 0.732 36 H 0.056 0.944 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 4.548 -8.062 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.204 4.204 4 C 0.022 3.978 5 H 0.083 0.917 6 C -0.204 4.204 7 C 0.014 3.986 8 H 0.121 0.879 9 N -0.375 5.375 10 C -0.044 4.044 11 C 0.362 3.638 12 O -0.462 6.462 13 C -0.579 4.579 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.395 5.395 17 Si 0.732 3.268 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.189 1.189 21 C -0.042 4.042 22 O -0.293 6.293 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.557 3.878 -7.849 13.715 hybrid contribution 0.862 0.447 0.280 1.011 sum -9.695 4.324 -7.569 13.038 Atomic orbital electron populations 1.21760 0.94938 1.01488 1.01828 1.21106 0.96187 0.97059 0.96197 1.21851 1.01275 0.95531 1.01710 1.23087 0.93210 0.95356 0.86102 0.91743 1.23634 0.95187 1.03617 0.97967 1.21944 0.87652 0.97476 0.91521 0.87865 1.47956 1.21029 1.05188 1.63322 1.21375 0.99663 0.83023 1.00343 1.18309 0.80209 0.88427 0.76875 1.90585 1.78808 1.16586 1.60180 1.21007 1.03157 0.94012 1.39676 0.90892 1.25744 0.98493 0.95035 0.94010 1.70021 1.26550 1.12456 1.30510 0.86381 0.80111 0.80780 0.79569 1.19696 1.20436 1.18851 1.23628 0.89768 1.00304 0.90527 1.88797 1.53300 1.68833 1.18358 0.91909 0.93080 0.93060 0.90494 0.91813 0.92244 0.93242 0.89522 0.90686 0.95169 0.90983 0.93511 0.92073 0.92595 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.07 37.16 0.34 -1.17 16 2 C -0.09 -1.01 2.93 -90.62 -0.27 -1.28 16 3 C -0.15 -1.71 8.70 37.16 0.32 -1.39 16 4 C 0.08 1.13 3.09 -25.68 -0.08 1.05 16 5 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 6 C -0.17 -2.67 6.05 -24.72 -0.15 -2.82 16 7 C 0.12 2.36 3.46 -66.40 -0.23 2.13 16 8 H 0.10 2.30 6.97 -51.93 -0.36 1.93 16 9 N -0.64 -14.40 2.79 -173.84 -0.49 -14.89 16 10 C 0.10 1.88 8.79 59.85 0.53 2.41 16 11 C 0.56 15.72 7.61 -12.98 -0.10 15.62 16 12 O -0.58 -18.57 14.38 5.20 0.07 -18.49 16 13 C -0.54 -15.11 8.74 -35.63 -0.31 -15.43 16 14 H 0.07 1.86 6.00 -52.48 -0.31 1.54 16 15 C 0.09 2.41 5.50 -17.37 -0.10 2.31 16 16 N -0.77 -22.82 11.83 55.55 0.66 -22.16 16 17 Si 0.91 19.94 29.56 -169.99 -5.02 14.91 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 21 C 0.04 0.62 6.84 37.73 0.26 0.87 16 22 O -0.37 -5.94 10.03 -35.23 -0.35 -6.29 16 23 H 0.06 0.73 7.78 -51.93 -0.40 0.33 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.81 7.70 -51.93 -0.40 0.41 16 28 H 0.06 0.73 6.04 -51.93 -0.31 0.41 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.40 4.47 -51.93 -0.23 1.17 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.03 0.53 7.88 -51.93 -0.41 0.12 16 33 H 0.07 1.39 6.09 -51.93 -0.32 1.07 16 34 H 0.05 0.77 6.90 -51.93 -0.36 0.41 16 35 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 1.53 7.07 -51.93 -0.37 1.16 16 LS Contribution 292.87 15.07 4.41 4.41 Total: -1.00 -32.62 292.87 -6.07 -38.69 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.57 Total: 1.50 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 0.22 Total: 2.31 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.17 Total: -37.05 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.28 Total: -24.78 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.62 -6.07 -38.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691470416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.362 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds