Wall clock time and date at job start Mon Mar 30 2020 04:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47233 * 2 1 4 4 C 1.53000 * 109.47040 * 120.00075 * 2 1 3 5 5 H 1.08998 * 110.54917 * 61.42724 * 4 2 1 6 6 C 1.54998 * 110.75321 * 184.39566 * 4 2 1 7 7 C 1.54812 * 102.09200 * 155.58942 * 6 4 2 8 8 H 1.08996 * 110.59799 * 97.85079 * 7 6 4 9 9 N 1.46499 * 110.48621 * 220.44612 * 7 6 4 10 10 C 1.46499 * 120.00225 * 56.21910 * 9 7 6 11 11 C 1.34780 * 119.99546 * 236.22472 * 9 7 6 12 12 O 1.21684 * 119.99943 * 359.97438 * 11 9 7 13 13 C 1.46377 * 119.99627 * 180.02562 * 11 9 7 14 14 H 1.08003 * 120.00016 * 359.97438 * 13 11 9 15 15 C 1.40041 * 119.99760 * 179.97438 * 13 11 9 16 16 N 1.30670 * 120.00203 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99891 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47248 * 90.00293 * 17 15 13 19 19 H 1.48500 * 109.47209 * 209.99938 * 17 15 13 20 20 H 1.48501 * 109.47337 * 330.00090 * 17 15 13 21 21 C 1.54099 * 104.18464 * 339.12101 * 7 6 4 22 22 O 1.43734 * 107.29820 * 357.97027 * 21 7 6 23 23 H 1.08996 * 109.47018 * 300.00123 * 1 2 3 24 24 H 1.08998 * 109.47178 * 59.99713 * 1 2 3 25 25 H 1.08994 * 109.46980 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47102 * 240.00231 * 2 1 3 27 27 H 1.09003 * 109.46888 * 60.00100 * 3 2 1 28 28 H 1.08993 * 109.47516 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47273 * 300.00229 * 3 2 1 30 30 H 1.09003 * 110.90225 * 37.38999 * 6 4 2 31 31 H 1.09001 * 110.90771 * 273.79064 * 6 4 2 32 32 H 1.09002 * 109.47391 * 270.00005 * 10 9 7 33 33 H 1.09001 * 109.46813 * 150.00061 * 10 9 7 34 34 H 1.09004 * 109.47041 * 30.00189 * 10 9 7 35 35 H 0.97006 * 120.00348 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.87653 * 117.39528 * 21 7 6 37 37 H 1.09003 * 109.87480 * 238.54045 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.7074 -1.7592 1.2544 6 6 3.5856 -0.6431 1.3361 7 6 3.8343 -0.8158 2.8543 8 1 4.0908 -1.8496 3.0857 9 7 4.8950 0.0879 3.3062 10 6 4.7755 1.5300 3.0774 11 6 5.9809 -0.4074 3.9323 12 8 6.0800 -1.6052 4.1226 13 6 7.0406 0.4957 4.3843 14 1 6.9524 1.5588 4.2157 15 6 8.1686 -0.0189 5.0354 16 7 8.2755 -1.3052 5.2389 17 14 9.5212 1.1334 5.6116 18 1 9.2328 1.5813 6.9978 19 1 10.8240 0.4213 5.5825 20 1 9.5822 2.3139 4.7126 21 6 2.4891 -0.4357 3.5029 22 8 1.6008 -0.0406 2.4443 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 3.9461 0.3258 0.9906 31 1 4.0484 -1.4526 0.7715 32 1 5.2205 1.7834 2.1152 33 1 5.2946 2.0679 3.8707 34 1 3.7225 1.8117 3.0762 35 1 9.0571 -1.6617 5.6895 36 1 2.0767 -1.2950 4.0316 37 1 2.6329 0.3939 4.1952 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691470416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:33 Heat of formation + Delta-G solvation = -110.987340 kcal Electronic energy + Delta-G solvation = -18230.489171 eV Core-core repulsion = 15392.736479 eV Total energy + Delta-G solvation = -2837.752692 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.13156 -39.17852 -36.17309 -35.44817 -34.61896 -32.03538 -29.36357 -28.10604 -27.98948 -27.11573 -24.34384 -22.90043 -21.01597 -20.20688 -18.63021 -17.96237 -17.26455 -16.99303 -16.43085 -15.91507 -15.57194 -15.27962 -15.05465 -14.41192 -14.18389 -14.09698 -13.42803 -13.33480 -13.13402 -12.96644 -12.82087 -12.72491 -12.59227 -12.55947 -12.23273 -12.15182 -12.01140 -11.69407 -11.50680 -11.40459 -10.94077 -10.62933 -9.81539 -9.10072 -8.30194 -6.86110 1.39927 1.40919 1.56352 2.22613 2.43225 2.70993 2.92807 3.48634 3.75094 3.81839 3.95559 4.07780 4.14793 4.24509 4.31171 4.50762 4.53445 4.70794 4.76352 4.80836 4.84369 4.90329 4.95302 5.01571 5.05508 5.11829 5.18537 5.25662 5.35970 5.50536 5.53978 5.70962 5.93934 6.11764 6.38611 6.86418 7.37557 8.44157 8.65442 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.048725 B = 0.005641 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.519324 B = 4962.475372 C = 5202.428944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 C -0.145 4.145 4 C 0.083 3.917 5 H 0.073 0.927 6 C -0.157 4.157 7 C 0.111 3.889 8 H 0.067 0.933 9 N -0.638 5.638 10 C 0.101 3.899 11 C 0.537 3.463 12 O -0.632 6.632 13 C -0.567 4.567 14 H 0.094 0.906 15 C 0.029 3.971 16 N -0.821 5.821 17 Si 0.996 3.004 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.247 1.247 21 C 0.048 3.952 22 O -0.372 6.372 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.274 0.726 36 H 0.061 0.939 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.089 6.609 -9.162 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.104 4.104 3 C -0.202 4.202 4 C 0.025 3.975 5 H 0.091 0.909 6 C -0.195 4.195 7 C 0.005 3.995 8 H 0.085 0.915 9 N -0.374 5.374 10 C -0.041 4.041 11 C 0.344 3.656 12 O -0.519 6.519 13 C -0.604 4.604 14 H 0.112 0.888 15 C -0.186 4.186 16 N -0.451 5.451 17 Si 0.815 3.185 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.171 1.171 21 C -0.030 4.030 22 O -0.291 6.291 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.142 5.979 -8.985 15.513 hybrid contribution 0.939 -0.220 0.566 1.118 sum -10.203 5.759 -8.419 14.428 Atomic orbital electron populations 1.21728 0.93838 1.02005 1.02092 1.21167 0.97060 0.96917 0.95207 1.21833 1.00718 0.95550 1.02109 1.23248 0.91424 0.96278 0.86529 0.90947 1.23569 0.97101 1.03851 0.95015 1.22072 0.87921 0.95123 0.94374 0.91454 1.47790 1.20273 1.07114 1.62192 1.21496 1.01390 0.80494 1.00761 1.18709 0.81772 0.87960 0.77164 1.90535 1.80393 1.18625 1.62381 1.21534 1.03707 0.95058 1.40055 0.88843 1.26997 1.01351 0.96837 0.93435 1.70195 1.27884 1.15275 1.31736 0.85049 0.75806 0.78269 0.79394 1.18612 1.19903 1.17054 1.23388 0.88581 1.00324 0.90756 1.88809 1.52671 1.69070 1.18583 0.93218 0.91250 0.92470 0.88769 0.93034 0.93029 0.91262 0.89078 0.90645 0.93788 0.91499 0.91005 0.91616 0.92085 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.07 71.98 0.65 -1.88 16 2 C -0.09 -1.74 2.93 -10.79 -0.03 -1.78 16 3 C -0.15 -2.99 8.70 71.98 0.63 -2.36 16 4 C 0.08 2.17 3.09 31.28 0.10 2.27 16 5 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 6 C -0.16 -4.95 6.05 31.90 0.19 -4.75 16 7 C 0.11 4.42 3.46 45.98 0.16 4.58 16 8 H 0.07 3.17 6.97 -2.39 -0.02 3.15 16 9 N -0.64 -29.19 2.79 -822.14 -2.30 -31.48 16 10 C 0.10 3.69 8.79 127.77 1.12 4.82 16 11 C 0.54 31.38 7.61 86.36 0.66 32.04 16 12 O -0.63 -42.61 14.38 -4.30 -0.06 -42.67 16 13 C -0.57 -31.96 8.74 24.83 0.22 -31.74 16 14 H 0.09 4.69 6.00 -2.91 -0.02 4.68 16 15 C 0.03 1.61 5.50 85.30 0.47 2.08 16 16 N -0.82 -50.35 11.83 21.83 0.26 -50.10 16 17 Si 1.00 40.67 29.56 68.60 2.03 42.70 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 21 C 0.05 1.63 6.84 72.35 0.49 2.12 16 22 O -0.37 -11.23 10.03 -148.98 -1.49 -12.73 16 23 H 0.05 1.04 7.78 -2.39 -0.02 1.02 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 1.19 7.70 -2.39 -0.02 1.17 16 28 H 0.05 1.14 6.04 -2.39 -0.01 1.12 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 2.80 4.47 -2.39 -0.01 2.79 16 31 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 32 H 0.04 1.48 7.88 -2.39 -0.02 1.46 16 33 H 0.07 2.50 6.09 -2.39 -0.01 2.49 16 34 H 0.07 2.24 6.90 -2.38 -0.02 2.23 16 35 H 0.27 15.22 8.29 -92.70 -0.77 14.45 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 2.89 7.07 -2.39 -0.02 2.87 16 Total: -1.00 -73.02 292.87 4.14 -68.87 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 1.05 Total: 20.01 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 4.66 Total: 5.40 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -2.04 Total: -81.58 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -1.56 Total: -55.40 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -73.02 4.14 -68.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691470416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.113 kcal (2) G-P(sol) polarization free energy of solvation -73.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds