Wall clock time and date at job start Mon Mar 30 2020 04:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47011 * 2 1 4 4 C 1.52998 * 109.47108 * 119.99634 * 2 1 3 5 5 H 1.09004 * 110.41935 * 57.69383 * 4 2 1 6 6 C 1.54475 * 110.37271 * 180.02562 * 4 2 1 7 7 C 1.54516 * 104.06428 * 142.81187 * 6 4 2 8 8 H 1.08996 * 110.50920 * 241.22066 * 7 6 4 9 9 N 1.46496 * 110.51096 * 118.64685 * 7 6 4 10 10 C 1.46506 * 119.99759 * 301.90277 * 9 7 6 11 11 C 1.34771 * 120.00157 * 121.90605 * 9 7 6 12 12 O 1.21693 * 119.99953 * 359.97438 * 11 9 7 13 13 C 1.46380 * 120.00206 * 179.97438 * 11 9 7 14 14 H 1.08001 * 119.99553 * 0.02562 * 13 11 9 15 15 C 1.40048 * 119.99886 * 179.97438 * 13 11 9 16 16 N 1.30664 * 120.00300 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99725 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47042 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46840 * 120.00337 * 17 15 13 20 20 H 1.48497 * 109.47307 * 240.00662 * 17 15 13 21 21 C 1.54475 * 104.18219 * 359.93097 * 7 6 4 22 22 O 1.44423 * 110.37315 * 295.38293 * 4 2 1 23 23 H 1.09004 * 109.47442 * 300.00520 * 1 2 3 24 24 H 1.09005 * 109.47260 * 59.99890 * 1 2 3 25 25 H 1.08997 * 109.47450 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47287 * 240.00205 * 2 1 3 27 27 H 1.09005 * 109.47198 * 300.00148 * 3 2 1 28 28 H 1.09003 * 109.47417 * 60.00033 * 3 2 1 29 29 H 1.09000 * 109.47063 * 179.97438 * 3 2 1 30 30 H 1.08999 * 110.51151 * 24.17012 * 6 4 2 31 31 H 1.09002 * 110.63309 * 261.51522 * 6 4 2 32 32 H 1.09001 * 109.47060 * 90.00688 * 10 9 7 33 33 H 1.09004 * 109.47073 * 210.00177 * 10 9 7 34 34 H 1.09000 * 109.47212 * 330.00260 * 10 9 7 35 35 H 0.96998 * 120.00561 * 179.97438 * 16 15 13 36 36 H 1.09003 * 110.37072 * 94.91972 * 21 7 6 37 37 H 1.09004 * 110.37585 * 217.25758 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6520 -1.7392 1.2857 6 6 3.5845 -0.7328 1.2706 7 6 3.9408 -0.5481 2.7628 8 1 4.5153 0.3668 2.9078 9 7 4.6881 -1.7062 3.2592 10 6 4.1002 -3.0458 3.1808 11 6 5.9165 -1.5392 3.7881 12 8 6.4050 -0.4266 3.8528 13 6 6.6630 -2.6963 4.2846 14 1 6.2296 -3.6839 4.2268 15 6 7.9396 -2.5229 4.8337 16 7 8.4642 -1.3282 4.9032 17 14 8.8925 -3.9996 5.4667 18 1 8.0839 -5.2301 5.2739 19 1 10.1684 -4.1237 4.7170 20 1 9.1829 -3.8190 6.9117 21 6 2.5708 -0.4446 3.4690 22 8 1.6604 0.0045 2.4389 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 3.9809 0.0921 0.6785 31 1 3.9666 -1.6846 0.9017 32 1 4.3723 -3.5070 2.2314 33 1 4.4759 -3.6561 4.0021 34 1 3.0150 -2.9709 3.2506 35 1 9.3482 -1.2079 5.2838 36 1 2.2643 -1.4199 3.8472 37 1 2.6163 0.2810 4.2812 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691470418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:37 Heat of formation + Delta-G solvation = -88.321724 kcal Electronic energy + Delta-G solvation = -18144.631423 eV Core-core repulsion = 15307.861586 eV Total energy + Delta-G solvation = -2836.769838 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.72545 -37.32268 -34.88881 -33.82201 -32.49089 -30.46055 -27.99838 -27.06923 -26.07884 -25.57302 -23.11939 -21.16549 -19.72071 -18.85651 -16.71400 -16.08110 -15.71786 -15.59896 -14.89591 -14.33002 -14.12547 -13.83031 -13.53724 -13.35988 -12.80289 -12.34014 -12.12940 -11.91131 -11.77750 -11.47666 -11.37520 -11.19897 -11.10087 -11.06055 -10.87528 -10.65889 -10.41383 -10.29755 -10.16214 -10.05972 -9.41245 -8.89903 -7.63484 -7.27049 -6.23574 -4.69351 3.10015 3.18441 3.22476 3.99225 4.14701 4.49068 4.59133 4.79085 4.92303 5.11628 5.25824 5.33064 5.48472 5.58938 5.64700 5.69609 5.75361 5.83888 5.91757 5.94883 5.96740 6.07569 6.13835 6.19048 6.23915 6.38055 6.47394 6.51210 6.57467 6.61715 7.09862 7.40801 7.57763 8.09603 8.30971 8.98091 9.36201 10.52641 10.71266 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.052008 B = 0.005420 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.249855 B = 5164.406624 C = 5337.853459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.147 4.147 4 C 0.080 3.920 5 H 0.062 0.938 6 C -0.165 4.165 7 C 0.122 3.878 8 H 0.104 0.896 9 N -0.638 5.638 10 C 0.099 3.901 11 C 0.555 3.445 12 O -0.577 6.577 13 C -0.542 4.542 14 H 0.073 0.927 15 C 0.087 3.913 16 N -0.766 5.766 17 Si 0.907 3.093 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.034 3.966 22 O -0.372 6.372 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.268 0.732 36 H 0.061 0.939 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.840 -1.216 -7.078 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.204 4.204 4 C 0.023 3.977 5 H 0.080 0.920 6 C -0.204 4.204 7 C 0.015 3.985 8 H 0.122 0.878 9 N -0.377 5.377 10 C -0.045 4.045 11 C 0.362 3.638 12 O -0.460 6.460 13 C -0.579 4.579 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.395 5.395 17 Si 0.732 3.268 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.044 4.044 22 O -0.290 6.290 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.577 -0.327 -6.959 13.511 hybrid contribution 0.619 -1.059 0.285 1.259 sum -10.958 -1.386 -6.674 12.905 Atomic orbital electron populations 1.21777 0.94998 1.01454 1.01841 1.21148 0.96123 0.97128 0.96305 1.21830 1.01331 0.95491 1.01728 1.22954 0.93882 0.94675 0.86226 0.91971 1.23425 0.95066 1.03277 0.98615 1.21919 0.92328 0.93335 0.90886 0.87773 1.47971 1.18768 1.04519 1.66426 1.21395 0.96262 0.85839 1.01051 1.18317 0.78240 0.90220 0.77050 1.90593 1.67988 1.26882 1.60500 1.21039 1.01125 0.93438 1.42270 0.90859 1.25747 0.97413 0.96231 0.93916 1.70024 1.14490 1.22085 1.32869 0.86326 0.79695 0.82026 0.78800 1.18728 1.20138 1.20121 1.23887 0.89055 0.99994 0.91489 1.89082 1.55572 1.64816 1.19563 0.91969 0.93040 0.93064 0.90501 0.93243 0.91739 0.92260 0.90316 0.90395 0.95018 0.90781 0.93978 0.92102 0.92105 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.10 37.16 0.34 -1.19 16 2 C -0.09 -1.05 2.84 -90.62 -0.26 -1.31 16 3 C -0.15 -1.77 8.77 37.16 0.33 -1.45 16 4 C 0.08 1.14 3.01 -25.96 -0.08 1.06 16 5 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 6 C -0.16 -2.69 5.93 -25.16 -0.15 -2.84 16 7 C 0.12 2.40 3.52 -66.36 -0.23 2.16 16 8 H 0.10 2.37 6.97 -51.93 -0.36 2.01 16 9 N -0.64 -14.31 2.81 -173.79 -0.49 -14.80 16 10 C 0.10 1.80 9.12 59.85 0.55 2.35 16 11 C 0.56 15.67 7.61 -12.99 -0.10 15.57 16 12 O -0.58 -18.53 14.38 5.20 0.07 -18.46 16 13 C -0.54 -15.04 8.74 -35.63 -0.31 -15.35 16 14 H 0.07 1.86 6.00 -52.49 -0.31 1.54 16 15 C 0.09 2.39 5.50 -17.37 -0.10 2.30 16 16 N -0.77 -22.76 11.83 55.55 0.66 -22.11 16 17 Si 0.91 19.85 29.56 -169.99 -5.02 14.83 16 18 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 C 0.03 0.57 7.19 37.93 0.27 0.85 16 22 O -0.37 -5.95 10.12 -35.23 -0.36 -6.31 16 23 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.85 7.61 -51.93 -0.40 0.46 16 29 H 0.06 0.75 6.11 -51.93 -0.32 0.44 16 30 H 0.08 1.25 5.79 -51.93 -0.30 0.95 16 31 H 0.08 1.28 7.27 -51.93 -0.38 0.91 16 32 H 0.03 0.54 7.92 -51.93 -0.41 0.13 16 33 H 0.07 1.40 6.09 -51.93 -0.32 1.08 16 34 H 0.04 0.65 6.26 -51.93 -0.32 0.33 16 35 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 36 H 0.06 1.00 6.14 -51.93 -0.32 0.68 16 37 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 292.51 15.07 4.41 4.41 Total: -1.00 -32.65 292.51 -5.99 -38.64 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.52 Total: 1.65 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 0.26 Total: 2.15 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.17 Total: -36.91 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.28 Total: -24.76 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.65 -5.99 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691470418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.686 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds