Wall clock time and date at job start Mon Mar 30 2020 04:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47011 * 2 1 4 4 C 1.52998 * 109.47108 * 119.99634 * 2 1 3 5 5 H 1.09004 * 110.41935 * 57.69383 * 4 2 1 6 6 C 1.54475 * 110.37271 * 180.02562 * 4 2 1 7 7 C 1.54516 * 104.06428 * 142.81187 * 6 4 2 8 8 H 1.08996 * 110.50920 * 241.22066 * 7 6 4 9 9 N 1.46496 * 110.51096 * 118.64685 * 7 6 4 10 10 C 1.46506 * 119.99759 * 301.90277 * 9 7 6 11 11 C 1.34771 * 120.00157 * 121.90605 * 9 7 6 12 12 O 1.21693 * 119.99953 * 359.97438 * 11 9 7 13 13 C 1.46380 * 120.00206 * 179.97438 * 11 9 7 14 14 H 1.08001 * 119.99553 * 0.02562 * 13 11 9 15 15 C 1.40048 * 119.99886 * 179.97438 * 13 11 9 16 16 N 1.30664 * 120.00300 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99725 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47042 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46840 * 120.00337 * 17 15 13 20 20 H 1.48497 * 109.47307 * 240.00662 * 17 15 13 21 21 C 1.54475 * 104.18219 * 359.93097 * 7 6 4 22 22 O 1.44423 * 110.37315 * 295.38293 * 4 2 1 23 23 H 1.09004 * 109.47442 * 300.00520 * 1 2 3 24 24 H 1.09005 * 109.47260 * 59.99890 * 1 2 3 25 25 H 1.08997 * 109.47450 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47287 * 240.00205 * 2 1 3 27 27 H 1.09005 * 109.47198 * 300.00148 * 3 2 1 28 28 H 1.09003 * 109.47417 * 60.00033 * 3 2 1 29 29 H 1.09000 * 109.47063 * 179.97438 * 3 2 1 30 30 H 1.08999 * 110.51151 * 24.17012 * 6 4 2 31 31 H 1.09002 * 110.63309 * 261.51522 * 6 4 2 32 32 H 1.09001 * 109.47060 * 90.00688 * 10 9 7 33 33 H 1.09004 * 109.47073 * 210.00177 * 10 9 7 34 34 H 1.09000 * 109.47212 * 330.00260 * 10 9 7 35 35 H 0.96998 * 120.00561 * 179.97438 * 16 15 13 36 36 H 1.09003 * 110.37072 * 94.91972 * 21 7 6 37 37 H 1.09004 * 110.37585 * 217.25758 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6520 -1.7392 1.2857 6 6 3.5845 -0.7328 1.2706 7 6 3.9408 -0.5481 2.7628 8 1 4.5153 0.3668 2.9078 9 7 4.6881 -1.7062 3.2592 10 6 4.1002 -3.0458 3.1808 11 6 5.9165 -1.5392 3.7881 12 8 6.4050 -0.4266 3.8528 13 6 6.6630 -2.6963 4.2846 14 1 6.2296 -3.6839 4.2268 15 6 7.9396 -2.5229 4.8337 16 7 8.4642 -1.3282 4.9032 17 14 8.8925 -3.9996 5.4667 18 1 8.0839 -5.2301 5.2739 19 1 10.1684 -4.1237 4.7170 20 1 9.1829 -3.8190 6.9117 21 6 2.5708 -0.4446 3.4690 22 8 1.6604 0.0045 2.4389 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 3.9809 0.0921 0.6785 31 1 3.9666 -1.6846 0.9017 32 1 4.3723 -3.5070 2.2314 33 1 4.4759 -3.6561 4.0021 34 1 3.0150 -2.9709 3.2506 35 1 9.3482 -1.2079 5.2838 36 1 2.2643 -1.4199 3.8472 37 1 2.6163 0.2810 4.2812 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691470418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:36 Heat of formation + Delta-G solvation = -110.491834 kcal Electronic energy + Delta-G solvation = -18145.592791 eV Core-core repulsion = 15307.861586 eV Total energy + Delta-G solvation = -2837.731206 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.12986 -39.18458 -36.20885 -35.43263 -34.62088 -31.96246 -29.35017 -28.12692 -27.94748 -27.20998 -24.33666 -22.90394 -20.80576 -20.56168 -18.57690 -17.90597 -17.26556 -17.00328 -16.34692 -15.77877 -15.66676 -15.36390 -14.95623 -14.61271 -14.23120 -13.83792 -13.53304 -13.43076 -13.17213 -12.96749 -12.86509 -12.78645 -12.63993 -12.42927 -12.25618 -12.13985 -11.97132 -11.66511 -11.55393 -11.35461 -10.95914 -10.68577 -9.81559 -9.10303 -8.30195 -6.86073 1.39692 1.40203 1.57970 2.22219 2.43526 2.64157 3.08291 3.50404 3.71229 3.74337 3.99747 4.07553 4.12915 4.23750 4.27208 4.46626 4.54441 4.69737 4.76751 4.79132 4.87589 4.89644 4.93585 5.00625 5.08810 5.09396 5.16351 5.23221 5.36328 5.48087 5.50989 5.72683 5.82223 6.13195 6.39955 6.86530 7.37977 8.44640 8.65848 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.052008 B = 0.005420 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.249855 B = 5164.406624 C = 5337.853459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C -0.147 4.147 4 C 0.084 3.916 5 H 0.081 0.919 6 C -0.156 4.156 7 C 0.113 3.887 8 H 0.060 0.940 9 N -0.639 5.639 10 C 0.096 3.904 11 C 0.537 3.463 12 O -0.633 6.633 13 C -0.566 4.566 14 H 0.096 0.904 15 C 0.028 3.972 16 N -0.822 5.822 17 Si 0.996 3.004 18 H -0.244 1.244 19 H -0.270 1.270 20 H -0.270 1.270 21 C 0.045 3.955 22 O -0.374 6.374 23 H 0.047 0.953 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.274 0.726 36 H 0.075 0.925 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.304 -3.588 -7.933 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 C -0.204 4.204 4 C 0.026 3.974 5 H 0.098 0.902 6 C -0.195 4.195 7 C 0.007 3.993 8 H 0.078 0.922 9 N -0.375 5.375 10 C -0.046 4.046 11 C 0.343 3.657 12 O -0.520 6.520 13 C -0.602 4.602 14 H 0.114 0.886 15 C -0.187 4.187 16 N -0.452 5.452 17 Si 0.816 3.184 18 H -0.166 1.166 19 H -0.195 1.195 20 H -0.195 1.195 21 C -0.033 4.033 22 O -0.293 6.293 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.113 -2.723 -7.844 15.521 hybrid contribution 1.009 -0.264 0.493 1.153 sum -12.104 -2.987 -7.352 14.473 Atomic orbital electron populations 1.21739 0.93644 1.02244 1.02021 1.21214 0.97196 0.96542 0.95640 1.21823 1.00480 0.96105 1.01967 1.23124 0.91916 0.95875 0.86465 0.90151 1.23340 0.97108 1.03300 0.95755 1.21998 0.92740 0.90743 0.93800 0.92170 1.47790 1.17567 1.06878 1.65285 1.21580 0.98016 0.83424 1.01602 1.18744 0.79943 0.89764 0.77242 1.90545 1.70006 1.28709 1.62759 1.21568 1.01916 0.94252 1.42482 0.88649 1.27019 0.98427 0.99804 0.93480 1.70202 1.15336 1.25401 1.34256 0.84988 0.77821 0.77617 0.77997 1.16631 1.19512 1.19472 1.23686 0.87546 1.00590 0.91432 1.89099 1.54871 1.65352 1.19976 0.93343 0.91363 0.91968 0.88656 0.91198 0.93338 0.93568 0.90488 0.90163 0.93490 0.91361 0.90635 0.91643 0.90654 0.89799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.10 71.98 0.65 -1.87 16 2 C -0.09 -1.85 2.84 -10.79 -0.03 -1.88 16 3 C -0.15 -3.35 8.77 71.98 0.63 -2.72 16 4 C 0.08 2.17 3.01 31.09 0.09 2.26 16 5 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 6 C -0.16 -4.98 5.93 31.61 0.19 -4.79 16 7 C 0.11 4.54 3.52 46.01 0.16 4.70 16 8 H 0.06 2.94 6.97 -2.39 -0.02 2.92 16 9 N -0.64 -28.84 2.81 -821.98 -2.31 -31.16 16 10 C 0.10 3.33 9.12 127.77 1.17 4.50 16 11 C 0.54 31.26 7.61 86.36 0.66 31.92 16 12 O -0.63 -42.94 14.38 -4.33 -0.06 -43.01 16 13 C -0.57 -31.66 8.74 24.83 0.22 -31.44 16 14 H 0.10 4.73 6.00 -2.91 -0.02 4.71 16 15 C 0.03 1.54 5.50 85.31 0.47 2.00 16 16 N -0.82 -50.50 11.83 21.83 0.26 -50.24 16 17 Si 1.00 40.49 29.56 68.60 2.03 42.52 16 18 H -0.24 -9.01 7.11 99.48 0.71 -8.30 16 19 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 21 C 0.05 1.53 7.19 72.48 0.52 2.05 16 22 O -0.37 -11.47 10.12 -148.98 -1.51 -12.98 16 23 H 0.05 1.02 7.85 -2.39 -0.02 1.00 16 24 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.05 1.25 7.61 -2.39 -0.02 1.23 16 29 H 0.05 1.16 6.11 -2.39 -0.01 1.15 16 30 H 0.08 2.47 5.79 -2.39 -0.01 2.46 16 31 H 0.08 2.52 7.27 -2.39 -0.02 2.50 16 32 H 0.05 1.49 7.92 -2.39 -0.02 1.47 16 33 H 0.07 2.44 6.09 -2.38 -0.01 2.43 16 34 H 0.08 2.10 6.26 -2.39 -0.01 2.08 16 35 H 0.27 15.20 8.29 -92.71 -0.77 14.43 16 36 H 0.08 2.32 6.14 -2.39 -0.01 2.30 16 37 H 0.08 2.89 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -74.11 292.51 4.19 -69.92 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 1.06 Total: 20.21 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 4.73 Total: 4.73 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -2.05 Total: -81.40 kcal Atomic # 8 Polarization: -54.41 SS G_CDS: -1.57 Total: -55.98 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -74.11 4.19 -69.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691470418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.569 kcal (2) G-P(sol) polarization free energy of solvation -74.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds