Wall clock time and date at job start Mon Mar 30 2020 04:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46945 * 2 1 4 4 C 1.53000 * 109.47198 * 119.99961 * 2 1 3 5 5 H 1.09006 * 110.41689 * 299.14419 * 4 2 1 6 6 C 1.54479 * 110.37226 * 176.83519 * 4 2 1 7 7 C 1.54511 * 104.06175 * 217.19019 * 6 4 2 8 8 H 1.08993 * 110.62939 * 118.70436 * 7 6 4 9 9 N 1.46502 * 110.50869 * 241.35890 * 7 6 4 10 10 C 1.46491 * 120.00503 * 56.09261 * 9 7 6 11 11 C 1.34779 * 119.99402 * 236.09586 * 9 7 6 12 12 O 1.21684 * 120.00084 * 359.97438 * 11 9 7 13 13 C 1.46376 * 119.99849 * 179.72407 * 11 9 7 14 14 H 1.08004 * 120.00058 * 352.69582 * 13 11 9 15 15 C 1.40052 * 120.00172 * 172.68879 * 13 11 9 16 16 N 1.30663 * 119.99619 * 6.03052 * 15 13 11 17 17 Si 1.86793 * 119.99885 * 186.02641 * 15 13 11 18 18 H 1.48499 * 109.46952 * 94.98294 * 17 15 13 19 19 H 1.48502 * 109.47010 * 214.98159 * 17 15 13 20 20 H 1.48496 * 109.47377 * 334.98220 * 17 15 13 21 21 C 1.54485 * 104.06227 * 359.97438 * 7 6 4 22 22 O 1.44421 * 110.37349 * 61.45241 * 4 2 1 23 23 H 1.08999 * 109.47136 * 299.99932 * 1 2 3 24 24 H 1.09004 * 109.47268 * 60.00223 * 1 2 3 25 25 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47136 * 240.00068 * 2 1 3 27 27 H 1.09004 * 109.46956 * 299.99969 * 3 2 1 28 28 H 1.08999 * 109.47148 * 60.00076 * 3 2 1 29 29 H 1.09000 * 109.46941 * 179.97438 * 3 2 1 30 30 H 1.09001 * 110.50976 * 98.54951 * 6 4 2 31 31 H 1.08999 * 110.50745 * 335.83501 * 6 4 2 32 32 H 1.09000 * 109.47319 * 270.00097 * 10 9 7 33 33 H 1.09004 * 109.46992 * 30.00268 * 10 9 7 34 34 H 1.09004 * 109.47449 * 149.99783 * 10 9 7 35 35 H 0.97006 * 120.00270 * 179.97438 * 16 15 13 36 36 H 1.08999 * 110.36935 * 142.81144 * 21 7 6 37 37 H 1.08996 * 110.37498 * 265.14894 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6977 -0.2107 2.1495 6 6 3.5825 -0.8030 1.2309 7 6 3.8921 -2.1915 1.8338 8 1 4.4199 -2.8146 1.1119 9 7 4.6778 -2.0540 3.0626 10 6 4.1728 -1.2350 4.1672 11 6 5.8654 -2.6810 3.1768 12 8 6.2847 -3.3616 2.2594 13 6 6.6533 -2.5387 4.4021 14 1 6.3430 -1.8408 5.1657 15 6 7.8095 -3.3077 4.5845 16 7 8.2506 -4.0642 3.6147 17 14 8.7211 -3.2517 6.2140 18 1 8.2665 -4.3736 7.0741 19 1 10.1805 -3.3754 5.9692 20 1 8.4408 -1.9617 6.8939 21 6 2.4999 -2.7842 2.1457 22 8 1.5976 -2.0960 1.2519 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4426 0.0005 30 1 4.0141 -0.0143 1.8472 31 1 3.9563 -0.7383 0.2090 32 1 4.5200 -0.2088 4.0470 33 1 3.0829 -1.2526 4.1639 34 1 4.5396 -1.6342 5.1129 35 1 9.0517 -4.5966 3.7408 36 1 2.4897 -3.8553 1.9440 37 1 2.2286 -2.5900 3.1833 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691470419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:38 Heat of formation + Delta-G solvation = -114.285044 kcal Electronic energy + Delta-G solvation = -18072.277892 eV Core-core repulsion = 15234.382201 eV Total energy + Delta-G solvation = -2837.895692 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.11516 -39.17393 -36.26699 -35.58089 -34.62759 -31.96721 -29.36828 -28.12789 -27.87314 -27.17021 -24.13856 -22.91846 -21.15511 -20.53330 -18.56587 -17.85515 -17.49051 -16.75133 -16.63641 -15.86407 -15.61075 -15.30789 -14.68415 -14.44040 -14.11365 -13.95557 -13.65517 -13.49143 -13.14898 -12.99038 -12.95831 -12.87845 -12.73052 -12.39003 -12.25816 -12.01787 -11.93919 -11.85469 -11.57562 -11.43083 -10.94470 -10.73878 -9.82301 -9.11081 -8.31108 -6.85668 1.40307 1.40952 1.57160 2.22251 2.43060 2.62568 3.04534 3.49044 3.68053 3.73462 3.98178 4.06372 4.13099 4.23972 4.34373 4.43479 4.50561 4.66773 4.74392 4.78464 4.84581 4.87080 4.97074 5.01390 5.03723 5.09554 5.12540 5.25329 5.35441 5.41457 5.47765 5.72162 5.81160 6.12734 6.39228 6.86405 7.37483 8.44037 8.65340 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.048816 B = 0.005339 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.443797 B = 5242.856277 C = 5325.925000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.143 4.143 4 C 0.084 3.916 5 H 0.080 0.920 6 C -0.149 4.149 7 C 0.110 3.890 8 H 0.061 0.939 9 N -0.638 5.638 10 C 0.096 3.904 11 C 0.537 3.463 12 O -0.633 6.633 13 C -0.567 4.567 14 H 0.095 0.905 15 C 0.028 3.972 16 N -0.822 5.822 17 Si 0.997 3.003 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.245 1.245 21 C 0.045 3.955 22 O -0.379 6.379 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.274 0.726 36 H 0.084 0.916 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.691 10.320 -0.319 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.200 4.200 4 C 0.027 3.973 5 H 0.098 0.902 6 C -0.188 4.188 7 C 0.005 3.995 8 H 0.080 0.920 9 N -0.374 5.374 10 C -0.046 4.046 11 C 0.344 3.656 12 O -0.521 6.521 13 C -0.603 4.603 14 H 0.113 0.887 15 C -0.187 4.187 16 N -0.452 5.452 17 Si 0.816 3.184 18 H -0.188 1.188 19 H -0.200 1.200 20 H -0.168 1.168 21 C -0.033 4.033 22 O -0.298 6.298 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.550 9.767 -1.004 15.934 hybrid contribution 0.926 -0.431 0.447 1.115 sum -11.624 9.336 -0.557 14.920 Atomic orbital electron populations 1.21734 0.93694 1.01743 1.02457 1.21181 0.97226 0.96518 0.95887 1.21798 1.01029 0.94058 1.03117 1.23168 0.91521 0.83128 0.99524 0.90176 1.23240 0.97088 0.96803 1.01654 1.22034 0.92146 0.96976 0.88365 0.92034 1.47786 1.20754 1.53042 1.15858 1.21572 0.98885 0.94258 0.89906 1.18745 0.80092 0.78419 0.88380 1.90541 1.72099 1.45874 1.43542 1.21513 1.09512 1.25837 1.03412 0.88685 1.27018 0.97316 0.92679 1.01665 1.70201 1.19890 1.21076 1.34015 0.85021 0.76858 0.80246 0.76290 1.18801 1.19968 1.16829 1.23666 0.87601 0.97381 0.94631 1.89082 1.53062 1.21356 1.66320 0.92017 0.91341 0.93389 0.91586 0.90834 0.91544 0.92979 0.89796 0.90988 0.93444 0.90730 0.91264 0.91616 0.89819 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.07 71.98 0.65 -1.96 16 2 C -0.09 -1.94 2.59 -10.79 -0.03 -1.97 16 3 C -0.14 -2.51 9.00 71.98 0.65 -1.86 16 4 C 0.08 2.22 2.80 31.10 0.09 2.30 16 5 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 6 C -0.15 -4.74 5.08 31.61 0.16 -4.58 16 7 C 0.11 4.47 3.53 46.01 0.16 4.63 16 8 H 0.06 3.01 6.97 -2.39 -0.02 3.00 16 9 N -0.64 -28.82 2.82 -822.00 -2.32 -31.14 16 10 C 0.10 3.33 8.98 127.77 1.15 4.47 16 11 C 0.54 31.28 7.60 86.36 0.66 31.94 16 12 O -0.63 -42.97 14.41 -4.30 -0.06 -43.03 16 13 C -0.57 -31.65 8.65 24.83 0.21 -31.44 16 14 H 0.10 4.70 6.15 -2.91 -0.02 4.68 16 15 C 0.03 1.57 5.49 85.31 0.47 2.04 16 16 N -0.82 -50.45 11.86 21.84 0.26 -50.19 16 17 Si 1.00 40.41 29.56 68.60 2.03 42.44 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 20 H -0.25 -9.10 7.11 99.48 0.71 -8.40 16 21 C 0.05 1.55 7.17 72.49 0.52 2.07 16 22 O -0.38 -11.97 10.79 -148.98 -1.61 -13.58 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 1.04 7.76 -2.38 -0.02 1.02 16 26 H 0.07 1.57 8.12 -2.39 -0.02 1.55 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.05 1.00 7.32 -2.39 -0.02 0.98 16 30 H 0.08 2.60 7.16 -2.39 -0.02 2.58 16 31 H 0.07 2.30 7.80 -2.39 -0.02 2.28 16 32 H 0.05 1.50 7.87 -2.39 -0.02 1.48 16 33 H 0.07 2.07 6.39 -2.39 -0.02 2.06 16 34 H 0.07 2.47 6.21 -2.38 -0.01 2.46 16 35 H 0.27 15.22 8.29 -92.70 -0.77 14.45 16 36 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.08 2.36 6.26 -2.39 -0.01 2.34 16 Total: -1.00 -74.12 295.91 4.03 -70.09 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 1.05 Total: 19.76 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 4.69 Total: 5.64 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -2.06 Total: -81.33 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -1.67 Total: -56.61 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -74.12 4.03 -70.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691470419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.197 kcal (2) G-P(sol) polarization free energy of solvation -74.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds