Wall clock time and date at job start Mon Mar 30 2020 03:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.50703 * 110.29168 * 57.87240 * 13 12 11 15 15 O 1.20824 * 119.99419 * 359.97438 * 14 13 12 16 16 O 1.34222 * 120.00144 * 180.02562 * 14 13 12 17 17 C 1.54262 * 110.32496 * 180.02562 * 13 12 11 18 18 C 1.54380 * 105.06292 * 118.89589 * 17 13 12 19 19 N 1.48557 * 104.59298 * 23.84972 * 18 17 13 20 20 C 1.48552 * 104.22439 * 320.51850 * 19 18 17 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 25 25 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 26 26 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 27 27 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 28 28 H 1.09000 * 109.46887 * 300.00672 * 12 11 10 29 29 H 1.08998 * 109.47285 * 60.00156 * 12 11 10 30 30 H 0.96702 * 116.99799 * 179.97438 * 16 14 13 31 31 H 1.08999 * 110.32599 * 237.79006 * 17 13 12 32 32 H 1.08998 * 110.32311 * 359.97438 * 17 13 12 33 33 H 1.09002 * 110.41588 * 142.63279 * 18 17 13 34 34 H 1.08996 * 110.40988 * 264.95518 * 18 17 13 35 35 H 1.00907 * 111.00193 * 200.95945 * 19 18 17 36 36 H 1.09002 * 110.41681 * 280.70219 * 20 19 18 37 37 H 1.09001 * 110.41586 * 158.26368 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 6 2.4748 -6.1499 0.0214 13 6 1.7099 -7.4749 0.0262 14 6 0.7987 -7.5566 -1.1714 15 8 0.7569 -6.6439 -1.9620 16 8 0.0328 -8.6427 -1.3591 17 6 2.6948 -8.6621 0.0326 18 6 2.3948 -9.4252 1.3406 19 7 0.9926 -9.0633 1.6720 20 6 0.8977 -7.6205 1.3310 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.8721 -3.6081 -0.8798 25 1 2.8721 -3.6002 0.9002 26 1 0.8536 -5.0411 0.9058 27 1 0.8541 -5.0485 -0.8741 28 1 3.1020 -6.0959 -0.8684 29 1 3.1009 -6.0883 0.9115 30 1 -0.5357 -8.6492 -2.1413 31 1 2.5184 -9.3051 -0.8297 32 1 3.7232 -8.3009 0.0319 33 1 2.4829 -10.5001 1.1825 34 1 3.0701 -9.1018 2.1328 35 1 0.8011 -9.2169 2.6507 36 1 1.3373 -7.0131 2.1222 37 1 -0.1415 -7.3365 1.1655 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691693724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:05 Heat of formation + Delta-G solvation = -110.929551 kcal Electronic energy + Delta-G solvation = -17637.260661 eV Core-core repulsion = 14799.510475 eV Total energy + Delta-G solvation = -2837.750186 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.83812 -38.26081 -36.24555 -34.83691 -32.91449 -31.28625 -29.58709 -27.83172 -24.77025 -23.68121 -22.32645 -21.48873 -19.93988 -19.52301 -17.87292 -16.89640 -16.25487 -16.00687 -15.48803 -15.07281 -14.41431 -14.29008 -13.77148 -13.06455 -12.85334 -12.68071 -12.42799 -12.15042 -11.95582 -11.79238 -11.66367 -11.58676 -11.10767 -10.91672 -10.90048 -10.61819 -10.36853 -10.28492 -9.91151 -9.40039 -9.15866 -8.91082 -8.78724 -8.27084 -5.92279 -3.94233 2.27600 3.05842 3.36121 3.41789 3.45316 4.01548 4.38974 4.43899 4.51687 4.68860 4.96102 5.07120 5.38741 5.42998 5.45382 5.50359 5.55172 5.60726 5.72118 5.78450 5.90943 6.05407 6.29492 6.39688 6.46218 6.52959 6.71227 6.96743 7.05764 7.16005 7.28372 7.77907 7.95662 8.03719 8.09979 8.52697 9.13476 9.69186 11.19184 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040866 B = 0.004509 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.002307 B = 6208.160451 C = 6429.875855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.106 4.106 11 C -0.134 4.134 12 C -0.096 4.096 13 C -0.053 4.053 14 C 0.488 3.512 15 O -0.498 6.498 16 O -0.506 6.506 17 C -0.113 4.113 18 C 0.038 3.962 19 N -0.660 5.660 20 C 0.052 3.948 21 H 0.259 0.741 22 H 0.013 0.987 23 H 0.015 0.985 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.403 0.597 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.338 0.662 36 H 0.060 0.940 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.361 -20.637 2.147 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.144 4.144 11 C -0.172 4.172 12 C -0.134 4.134 13 C -0.055 4.055 14 C 0.330 3.670 15 O -0.385 6.385 16 O -0.316 6.316 17 C -0.151 4.151 18 C -0.092 4.092 19 N -0.288 5.288 20 C -0.077 4.077 21 H 0.069 0.931 22 H 0.031 0.969 23 H 0.034 0.966 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.261 0.739 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.154 0.846 36 H 0.079 0.921 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.115 -20.548 1.682 20.851 hybrid contribution 0.530 1.456 0.193 1.561 sum 3.645 -19.092 1.875 19.527 Atomic orbital electron populations 1.69973 1.06047 1.26423 1.51200 1.25032 0.94830 0.99179 0.95504 0.86619 0.79826 0.83623 0.78068 1.20698 1.21272 1.19937 1.21305 0.92995 0.91263 1.50096 0.92807 1.19093 0.94095 0.91406 0.97060 1.21567 0.98941 0.94076 0.99793 1.21983 0.98237 0.94214 1.02717 1.21677 0.98099 0.91035 1.02604 1.21331 0.94144 0.98531 0.91457 1.23147 0.78537 0.78903 0.86433 1.90730 1.64808 1.37736 1.45228 1.84616 1.53826 1.43300 1.49884 1.22437 0.98577 0.95111 0.98944 1.22901 0.89533 1.00597 0.96158 1.63729 1.23144 1.16595 1.25365 1.22946 1.00772 0.89533 0.94485 0.93112 0.96865 0.96638 0.93553 0.93923 0.93109 0.89808 0.91068 0.90895 0.73914 0.90390 0.89970 0.89884 0.93815 0.84616 0.92145 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.29 55.43 0.74 -27.22 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.35 9.11 -34.44 -0.31 -15.66 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 11 C -0.13 -2.45 4.70 -26.73 -0.13 -2.58 16 12 C -0.10 -1.36 3.63 -26.73 -0.10 -1.46 16 13 C -0.05 -0.65 0.70 -154.28 -0.11 -0.76 16 14 C 0.49 6.76 6.40 36.01 0.23 6.99 16 15 O -0.50 -8.68 14.39 -18.75 -0.27 -8.95 16 16 O -0.51 -5.64 13.16 -39.24 -0.52 -6.16 16 17 C -0.11 -1.09 6.23 -25.35 -0.16 -1.25 16 18 C 0.04 0.32 7.47 -2.18 -0.02 0.30 16 19 N -0.66 -6.40 7.62 -109.67 -0.84 -7.24 16 20 C 0.05 0.59 5.51 -2.19 -0.01 0.58 16 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.90 7.38 -51.93 -0.38 0.51 16 27 H 0.08 1.71 5.41 -51.93 -0.28 1.43 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 30 H 0.40 2.88 9.10 45.56 0.41 3.30 16 31 H 0.08 0.76 7.61 -51.93 -0.40 0.36 16 32 H 0.08 0.71 7.71 -51.93 -0.40 0.31 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.34 2.64 8.92 -39.29 -0.35 2.29 16 36 H 0.06 0.65 7.81 -51.93 -0.41 0.25 16 37 H 0.09 1.06 7.85 -51.93 -0.41 0.65 16 LS Contribution 301.61 15.07 4.55 4.55 Total: -1.00 -34.36 301.61 -7.47 -41.82 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.13 Total: 0.25 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -0.97 Total: -14.33 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.10 Total: -34.45 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.79 Total: -15.11 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.36 -7.47 -41.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691693724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.108 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds