Wall clock time and date at job start Mon Mar 30 2020 03:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.50703 * 110.29168 * 57.87240 * 13 12 11 15 15 O 1.20824 * 119.99419 * 359.97438 * 14 13 12 16 16 O 1.34222 * 120.00144 * 180.02562 * 14 13 12 17 17 C 1.54262 * 110.32496 * 180.02562 * 13 12 11 18 18 C 1.54380 * 105.06292 * 118.89589 * 17 13 12 19 19 N 1.48557 * 104.59298 * 23.84972 * 18 17 13 20 20 C 1.48552 * 104.22439 * 320.51850 * 19 18 17 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 25 25 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 26 26 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 27 27 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 28 28 H 1.09000 * 109.46887 * 300.00672 * 12 11 10 29 29 H 1.08998 * 109.47285 * 60.00156 * 12 11 10 30 30 H 0.96702 * 116.99799 * 179.97438 * 16 14 13 31 31 H 1.08999 * 110.32599 * 237.79006 * 17 13 12 32 32 H 1.08998 * 110.32311 * 359.97438 * 17 13 12 33 33 H 1.09002 * 110.41588 * 142.63279 * 18 17 13 34 34 H 1.08996 * 110.40988 * 264.95518 * 18 17 13 35 35 H 1.00907 * 111.00193 * 200.95945 * 19 18 17 36 36 H 1.09002 * 110.41681 * 280.70219 * 20 19 18 37 37 H 1.09001 * 110.41586 * 158.26368 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 6 2.4748 -6.1499 0.0214 13 6 1.7099 -7.4749 0.0262 14 6 0.7987 -7.5566 -1.1714 15 8 0.7569 -6.6439 -1.9620 16 8 0.0328 -8.6427 -1.3591 17 6 2.6948 -8.6621 0.0326 18 6 2.3948 -9.4252 1.3406 19 7 0.9926 -9.0633 1.6720 20 6 0.8977 -7.6205 1.3310 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.8721 -3.6081 -0.8798 25 1 2.8721 -3.6002 0.9002 26 1 0.8536 -5.0411 0.9058 27 1 0.8541 -5.0485 -0.8741 28 1 3.1020 -6.0959 -0.8684 29 1 3.1009 -6.0883 0.9115 30 1 -0.5357 -8.6492 -2.1413 31 1 2.5184 -9.3051 -0.8297 32 1 3.7232 -8.3009 0.0319 33 1 2.4829 -10.5001 1.1825 34 1 3.0701 -9.1018 2.1328 35 1 0.8011 -9.2169 2.6507 36 1 1.3373 -7.0131 2.1222 37 1 -0.1415 -7.3365 1.1655 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691693724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:04 Heat of formation + Delta-G solvation = -136.283117 kcal Electronic energy + Delta-G solvation = -17638.360075 eV Core-core repulsion = 14799.510475 eV Total energy + Delta-G solvation = -2838.849600 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.87140 -39.18256 -37.35982 -36.46394 -34.75283 -32.78580 -30.57001 -29.32242 -26.54386 -24.64178 -23.80173 -22.58988 -21.56797 -20.59542 -18.89952 -18.46744 -17.80410 -17.05403 -16.58926 -16.48802 -16.14063 -15.51097 -14.76398 -14.56263 -14.18099 -14.13164 -13.67280 -13.46910 -13.21120 -13.01130 -12.86992 -12.74156 -12.58826 -12.47934 -12.39957 -12.06908 -11.91841 -11.74302 -11.49581 -11.29450 -10.89641 -10.85062 -10.56502 -9.50223 -8.20498 -6.32750 1.20904 1.38315 1.40864 1.51973 2.13152 2.40354 3.11848 3.21818 3.50483 3.63633 3.74428 4.16844 4.21966 4.29697 4.38377 4.47132 4.61303 4.73110 4.74462 4.84817 4.88522 4.92605 5.00076 5.06384 5.10851 5.28866 5.33258 5.36358 5.52347 5.70300 5.74149 5.80596 5.87468 6.24825 6.43235 6.84743 7.06900 7.36720 8.91725 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.040866 B = 0.004509 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.002307 B = 6208.160451 C = 6429.875855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.023 3.977 10 C -0.095 4.095 11 C -0.126 4.126 12 C -0.088 4.088 13 C -0.055 4.055 14 C 0.489 3.511 15 O -0.543 6.543 16 O -0.499 6.499 17 C -0.109 4.109 18 C 0.040 3.960 19 N -0.666 5.666 20 C 0.054 3.946 21 H 0.264 0.736 22 H -0.010 1.010 23 H -0.020 1.020 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.420 0.580 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.350 0.650 36 H 0.067 0.933 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 -21.506 3.069 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.014 4.014 10 C -0.132 4.132 11 C -0.163 4.163 12 C -0.125 4.125 13 C -0.057 4.057 14 C 0.333 3.667 15 O -0.434 6.434 16 O -0.311 6.311 17 C -0.147 4.147 18 C -0.089 4.089 19 N -0.297 5.297 20 C -0.076 4.076 21 H 0.072 0.928 22 H 0.008 0.992 23 H -0.002 1.002 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.280 0.720 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.167 0.833 36 H 0.085 0.915 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.894 -21.463 2.611 22.168 hybrid contribution -0.114 1.671 -0.116 1.679 sum 4.780 -19.791 2.495 20.513 Atomic orbital electron populations 1.70119 1.07990 1.27788 1.51783 1.26063 0.95806 1.03619 0.94635 0.85391 0.78708 0.78084 0.78515 1.19840 1.20531 1.18419 1.21747 0.93595 0.92447 1.50485 0.92054 1.19024 0.94563 0.93653 0.94192 1.21401 0.97838 0.93767 1.00220 1.21820 0.98651 0.94194 1.01653 1.21562 0.97203 0.90235 1.03517 1.21334 0.94559 0.98568 0.91199 1.23535 0.78354 0.78521 0.86274 1.90724 1.66336 1.39328 1.46973 1.84574 1.53612 1.42011 1.50860 1.22475 0.98524 0.93923 0.99797 1.22964 0.88929 1.01198 0.95768 1.63695 1.24335 1.15157 1.26465 1.22855 0.99672 0.90904 0.94124 0.92774 0.99164 1.00186 0.93823 0.92515 0.92909 0.92285 0.91457 0.88576 0.71957 0.90452 0.88458 0.88569 0.92207 0.83315 0.91467 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.59 13.29 21.45 0.28 -59.30 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.97 45.70 29.54 68.60 2.03 47.72 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -32.72 9.11 25.60 0.23 -32.49 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.30 4.97 29.85 0.15 1.44 16 10 C -0.09 -4.18 5.15 30.59 0.16 -4.03 16 11 C -0.13 -4.65 4.70 30.59 0.14 -4.51 16 12 C -0.09 -2.36 3.63 30.59 0.11 -2.25 16 13 C -0.05 -1.27 0.70 -52.03 -0.04 -1.30 16 14 C 0.49 13.42 6.40 71.24 0.46 13.88 16 15 O -0.54 -19.47 14.39 21.97 0.32 -19.15 16 16 O -0.50 -10.67 13.16 -51.34 -0.68 -11.34 16 17 C -0.11 -1.83 6.23 31.49 0.20 -1.63 16 18 C 0.04 0.55 7.47 86.45 0.65 1.19 16 19 N -0.67 -11.32 7.62 -500.87 -3.82 -15.14 16 20 C 0.05 1.14 5.51 86.45 0.48 1.62 16 21 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 22 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 23 H -0.02 -1.28 8.14 -2.38 -0.02 -1.30 16 24 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 26 H 0.05 1.89 7.38 -2.39 -0.02 1.87 16 27 H 0.06 2.51 5.41 -2.39 -0.01 2.50 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.10 2.16 8.10 -2.39 -0.02 2.14 16 30 H 0.42 5.71 9.10 -74.06 -0.67 5.03 16 31 H 0.08 1.32 7.61 -2.39 -0.02 1.30 16 32 H 0.10 1.35 7.71 -2.39 -0.02 1.33 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.35 4.58 8.92 -89.69 -0.80 3.78 16 36 H 0.07 1.32 7.81 -2.39 -0.02 1.30 16 37 H 0.07 1.69 7.85 -2.39 -0.02 1.67 16 Total: -1.00 -75.38 301.61 0.72 -74.66 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -0.41 Total: 10.40 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 2.99 Total: -27.84 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -3.53 Total: -74.45 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.36 Total: -30.49 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -75.38 0.72 -74.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691693724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.628 kcal (2) G-P(sol) polarization free energy of solvation -75.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds