Wall clock time and date at job start Mon Mar 30 2020 03:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.50698 * 110.28689 * 302.12405 * 13 12 11 15 15 O 1.20829 * 120.00122 * 0.02562 * 14 13 12 16 16 O 1.34232 * 120.00462 * 179.97438 * 14 13 12 17 17 C 1.54262 * 110.32496 * 180.02562 * 13 12 11 18 18 C 1.54386 * 105.05886 * 241.10139 * 17 13 12 19 19 N 1.48554 * 104.59389 * 23.85348 * 18 17 13 20 20 C 1.48559 * 104.22221 * 320.51441 * 19 18 17 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 25 25 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 26 26 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 27 27 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 28 28 H 1.09000 * 109.46887 * 300.00672 * 12 11 10 29 29 H 1.08998 * 109.47285 * 60.00156 * 12 11 10 30 30 H 0.96693 * 117.00632 * 180.02562 * 16 14 13 31 31 H 1.08998 * 110.32311 * 359.97438 * 17 13 12 32 32 H 1.09004 * 110.32763 * 122.20546 * 17 13 12 33 33 H 1.08998 * 110.40734 * 142.63425 * 18 17 13 34 34 H 1.09003 * 110.41162 * 264.95377 * 18 17 13 35 35 H 1.00901 * 110.99792 * 200.96355 * 19 18 17 36 36 H 1.08999 * 110.41103 * 280.70693 * 20 19 18 37 37 H 1.08997 * 110.41400 * 158.26225 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 6 2.4748 -6.1499 0.0214 13 6 1.7099 -7.4749 0.0262 14 6 0.7966 -7.5467 1.2227 15 8 0.7534 -6.6276 2.0059 16 8 0.0302 -8.6313 1.4181 17 6 2.6948 -8.6621 0.0326 18 6 2.3981 -9.4364 -1.2697 19 7 1.7810 -8.4300 -2.1713 20 6 0.9010 -7.6318 -1.2793 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.8721 -3.6081 -0.8798 25 1 2.8721 -3.6002 0.9002 26 1 0.8536 -5.0411 0.9058 27 1 0.8541 -5.0485 -0.8741 28 1 3.1020 -6.0959 -0.8684 29 1 3.1009 -6.0883 0.9115 30 1 -0.5396 -8.6314 2.1992 31 1 3.7232 -8.3009 0.0319 32 1 2.5162 -9.2976 0.9000 33 1 3.3220 -9.8193 -1.7031 34 1 1.7028 -10.2533 -1.0762 35 1 1.2462 -8.8775 -2.9006 36 1 -0.0302 -8.1649 -1.0878 37 1 0.6976 -6.6559 -1.7201 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691693725.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:06 Heat of formation + Delta-G solvation = -110.292685 kcal Electronic energy + Delta-G solvation = -17640.758636 eV Core-core repulsion = 14803.036066 eV Total energy + Delta-G solvation = -2837.722570 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.92112 -38.33734 -36.37102 -34.79874 -32.86130 -31.28010 -29.61023 -27.83367 -24.81180 -23.61446 -22.50209 -21.36249 -19.85594 -19.55802 -17.95674 -17.30313 -16.11110 -15.79299 -15.49085 -15.10717 -14.41401 -14.33692 -13.94928 -13.29356 -12.90215 -12.60292 -12.39498 -12.08798 -11.86700 -11.80407 -11.70929 -11.47176 -11.09018 -10.93765 -10.87190 -10.68308 -10.32627 -10.21459 -9.91862 -9.36184 -9.11703 -8.86796 -8.80332 -8.24854 -5.90036 -3.91576 2.16017 2.90799 3.37030 3.43923 3.48850 4.11543 4.33686 4.43090 4.54176 4.68489 4.98439 5.06002 5.33300 5.42346 5.45492 5.49819 5.62187 5.69133 5.78222 5.80492 5.93595 6.19597 6.33334 6.38718 6.47178 6.53660 6.76221 7.01610 7.04685 7.18825 7.32885 7.81166 7.88978 7.99238 8.12630 8.55875 9.16440 9.71797 11.21526 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038289 B = 0.004607 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.109428 B = 6076.086088 C = 6372.446067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.106 4.106 11 C -0.134 4.134 12 C -0.092 4.092 13 C -0.051 4.051 14 C 0.481 3.519 15 O -0.489 6.489 16 O -0.522 6.522 17 C -0.112 4.112 18 C 0.036 3.964 19 N -0.659 5.659 20 C 0.045 3.955 21 H 0.258 0.742 22 H 0.014 0.986 23 H 0.013 0.987 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.408 0.592 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.340 0.660 36 H 0.050 0.950 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.041 -21.751 -1.027 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.143 4.143 11 C -0.172 4.172 12 C -0.129 4.129 13 C -0.052 4.052 14 C 0.322 3.678 15 O -0.375 6.375 16 O -0.334 6.334 17 C -0.150 4.150 18 C -0.093 4.093 19 N -0.288 5.288 20 C -0.085 4.085 21 H 0.068 0.932 22 H 0.033 0.967 23 H 0.031 0.969 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.266 0.734 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.156 0.844 36 H 0.068 0.932 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.718 -20.893 -1.208 21.104 hybrid contribution -0.822 0.332 0.783 1.182 sum 1.896 -20.561 -0.425 20.653 Atomic orbital electron populations 1.69985 1.06049 1.26269 1.51432 1.25033 0.94826 0.99183 0.95551 0.86566 0.80160 0.83973 0.77483 1.19758 1.21083 1.21091 1.21356 0.93065 0.91254 1.49781 0.92721 1.19101 0.94118 0.91468 0.97002 1.21556 0.98923 0.93984 0.99869 1.22014 0.98306 0.94438 1.02399 1.21604 0.98045 0.90460 1.02801 1.21350 0.94040 0.99467 0.90381 1.23416 0.78599 0.78930 0.86868 1.90739 1.64312 1.36993 1.45435 1.84504 1.54278 1.43995 1.50640 1.22441 0.99595 0.94939 0.98018 1.22928 0.99871 0.93811 0.92690 1.63721 1.31964 1.22163 1.10960 1.23107 0.93893 1.00408 0.91056 0.93207 0.96715 0.96854 0.93744 0.93630 0.90167 0.92966 0.90024 0.91458 0.73397 0.89555 0.90768 0.89776 0.93812 0.84431 0.93153 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.12 13.29 55.43 0.74 -27.38 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.52 -15.42 9.11 -34.44 -0.31 -15.73 16 8 H 0.05 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.35 5.15 -26.73 -0.14 -2.49 16 11 C -0.13 -2.50 4.69 -26.73 -0.13 -2.63 16 12 C -0.09 -1.36 3.74 -26.73 -0.10 -1.46 16 13 C -0.05 -0.62 0.70 -154.28 -0.11 -0.73 16 14 C 0.48 6.38 6.50 36.00 0.23 6.61 16 15 O -0.49 -8.34 14.39 -18.75 -0.27 -8.61 16 16 O -0.52 -5.14 12.83 -39.26 -0.50 -5.65 16 17 C -0.11 -1.10 6.23 -25.34 -0.16 -1.25 16 18 C 0.04 0.31 7.47 -2.18 -0.02 0.29 16 19 N -0.66 -6.55 7.62 -109.66 -0.84 -7.38 16 20 C 0.04 0.51 6.37 -2.18 -0.01 0.50 16 21 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 22 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.08 1.64 5.41 -51.93 -0.28 1.36 16 27 H 0.05 0.94 6.35 -51.93 -0.33 0.61 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.41 2.42 9.10 45.56 0.41 2.84 16 31 H 0.09 0.82 7.71 -51.93 -0.40 0.42 16 32 H 0.07 0.67 7.61 -51.93 -0.39 0.27 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.34 2.70 8.92 -39.29 -0.35 2.35 16 36 H 0.05 0.54 7.55 -51.93 -0.39 0.14 16 37 H 0.10 1.29 6.06 -51.93 -0.31 0.97 16 LS Contribution 299.28 15.07 4.51 4.51 Total: -1.00 -34.41 299.28 -7.33 -41.74 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.97 Total: 0.28 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -0.98 Total: -14.94 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.10 Total: -34.76 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.77 Total: -14.25 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.41 -7.33 -41.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691693725.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.554 kcal (2) G-P(sol) polarization free energy of solvation -34.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds