Wall clock time and date at job start Mon Mar 30 2020 03:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.52997 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47000 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.50698 * 110.28689 * 302.12405 * 13 12 11 15 15 O 1.20829 * 120.00122 * 0.02562 * 14 13 12 16 16 O 1.34232 * 120.00462 * 179.97438 * 14 13 12 17 17 C 1.54262 * 110.32496 * 180.02562 * 13 12 11 18 18 C 1.54386 * 105.05886 * 241.10139 * 17 13 12 19 19 N 1.48554 * 104.59389 * 23.85348 * 18 17 13 20 20 C 1.48559 * 104.22221 * 320.51441 * 19 18 17 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 25 25 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 26 26 H 1.08995 * 109.47672 * 300.00066 * 11 10 9 27 27 H 1.08998 * 109.47443 * 60.00612 * 11 10 9 28 28 H 1.09000 * 109.46887 * 300.00672 * 12 11 10 29 29 H 1.08998 * 109.47285 * 60.00156 * 12 11 10 30 30 H 0.96693 * 117.00632 * 180.02562 * 16 14 13 31 31 H 1.08998 * 110.32311 * 359.97438 * 17 13 12 32 32 H 1.09004 * 110.32763 * 122.20546 * 17 13 12 33 33 H 1.08998 * 110.40734 * 142.63425 * 18 17 13 34 34 H 1.09003 * 110.41162 * 264.95377 * 18 17 13 35 35 H 1.00901 * 110.99792 * 200.96355 * 19 18 17 36 36 H 1.08999 * 110.41103 * 280.70693 * 20 19 18 37 37 H 1.08997 * 110.41400 * 158.26225 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4805 -4.9870 0.0158 12 6 2.4748 -6.1499 0.0214 13 6 1.7099 -7.4749 0.0262 14 6 0.7966 -7.5467 1.2227 15 8 0.7534 -6.6276 2.0059 16 8 0.0302 -8.6313 1.4181 17 6 2.6948 -8.6621 0.0326 18 6 2.3981 -9.4364 -1.2697 19 7 1.7810 -8.4300 -2.1713 20 6 0.9010 -7.6318 -1.2793 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.8721 -3.6081 -0.8798 25 1 2.8721 -3.6002 0.9002 26 1 0.8536 -5.0411 0.9058 27 1 0.8541 -5.0485 -0.8741 28 1 3.1020 -6.0959 -0.8684 29 1 3.1009 -6.0883 0.9115 30 1 -0.5396 -8.6314 2.1992 31 1 3.7232 -8.3009 0.0319 32 1 2.5162 -9.2976 0.9000 33 1 3.3220 -9.8193 -1.7031 34 1 1.7028 -10.2533 -1.0762 35 1 1.2462 -8.8775 -2.9006 36 1 -0.0302 -8.1649 -1.0878 37 1 0.6976 -6.6559 -1.7201 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691693725.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:06 Heat of formation + Delta-G solvation = -135.693707 kcal Electronic energy + Delta-G solvation = -17641.860106 eV Core-core repulsion = 14803.036066 eV Total energy + Delta-G solvation = -2838.824041 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.93107 -39.24508 -37.41733 -36.47242 -34.72660 -32.76717 -30.64585 -29.31979 -26.60562 -24.55118 -23.96072 -22.56992 -21.50834 -20.61148 -18.93812 -18.48305 -18.14756 -16.76626 -16.65251 -16.47842 -15.96007 -15.71408 -14.87961 -14.63382 -14.28569 -14.14765 -13.81257 -13.38906 -13.16167 -13.02355 -12.81670 -12.78043 -12.58218 -12.52344 -12.27886 -12.05460 -11.98111 -11.72143 -11.53537 -11.27175 -10.90456 -10.83796 -10.56443 -9.54225 -8.20240 -6.32223 1.13509 1.38602 1.39879 1.53638 2.01497 2.40842 3.12083 3.35004 3.42390 3.56532 3.73484 4.20287 4.24622 4.29201 4.34446 4.48932 4.55662 4.70690 4.77063 4.85998 4.87660 4.96000 5.03502 5.08362 5.14063 5.30577 5.33826 5.36556 5.51812 5.68718 5.70502 5.80443 5.87329 6.25756 6.40796 6.85114 6.97649 7.37136 8.92224 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.038289 B = 0.004607 C = 0.004393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.109428 B = 6076.086088 C = 6372.446067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.095 4.095 11 C -0.125 4.125 12 C -0.082 4.082 13 C -0.053 4.053 14 C 0.486 3.514 15 O -0.536 6.536 16 O -0.508 6.508 17 C -0.109 4.109 18 C 0.040 3.960 19 N -0.667 5.667 20 C 0.048 3.952 21 H 0.264 0.736 22 H -0.018 1.018 23 H -0.010 1.010 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.426 0.574 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.352 0.648 36 H 0.059 0.941 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 -22.880 -1.559 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.132 4.132 11 C -0.162 4.162 12 C -0.120 4.120 13 C -0.055 4.055 14 C 0.329 3.671 15 O -0.425 6.425 16 O -0.322 6.322 17 C -0.147 4.147 18 C -0.089 4.089 19 N -0.298 5.298 20 C -0.082 4.082 21 H 0.072 0.928 22 H 0.000 1.000 23 H 0.008 0.992 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.287 0.713 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.169 0.831 36 H 0.077 0.923 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.982 -22.071 -1.747 22.495 hybrid contribution -1.297 0.629 0.957 1.730 sum 2.686 -21.442 -0.790 21.624 Atomic orbital electron populations 1.70123 1.07955 1.27722 1.51869 1.26058 0.95822 1.03595 0.94629 0.85337 0.79048 0.78393 0.77889 1.18474 1.20042 1.20309 1.21775 0.93574 0.92481 1.50375 0.92166 1.19020 0.94523 0.93580 0.94225 1.21393 0.97867 0.93887 1.00072 1.21857 0.98648 0.94185 1.01554 1.21443 0.97200 0.90349 1.02970 1.21312 0.94587 0.99080 0.90543 1.23584 0.78380 0.78708 0.86398 1.90735 1.65891 1.38739 1.47146 1.84451 1.53893 1.42189 1.51627 1.22479 0.98934 0.93940 0.99332 1.22980 1.00765 0.93477 0.91641 1.63692 1.31835 1.22964 1.11269 1.22986 0.94469 1.00036 0.90683 0.92763 1.00006 0.99180 0.92836 0.93865 0.92110 0.92835 0.89201 0.91811 0.71251 0.89132 0.89713 0.88256 0.92472 0.83103 0.92298 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.84 13.29 21.45 0.28 -59.55 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 46.15 29.54 68.60 2.03 48.18 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.54 -33.10 9.11 25.60 0.23 -32.86 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.36 4.97 29.85 0.15 1.51 16 10 C -0.09 -4.31 5.15 30.59 0.16 -4.16 16 11 C -0.13 -4.78 4.69 30.59 0.14 -4.63 16 12 C -0.08 -2.40 3.74 30.59 0.11 -2.28 16 13 C -0.05 -1.25 0.70 -52.04 -0.04 -1.29 16 14 C 0.49 12.51 6.50 71.24 0.46 12.98 16 15 O -0.54 -18.55 14.39 21.95 0.32 -18.24 16 16 O -0.51 -9.05 12.83 -51.43 -0.66 -9.71 16 17 C -0.11 -1.85 6.23 31.49 0.20 -1.66 16 18 C 0.04 0.56 7.47 86.45 0.65 1.21 16 19 N -0.67 -11.68 7.62 -500.86 -3.82 -15.50 16 20 C 0.05 1.03 6.37 86.45 0.55 1.58 16 21 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 22 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 23 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 24 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.06 2.59 5.41 -2.39 -0.01 2.58 16 27 H 0.05 1.99 6.35 -2.39 -0.02 1.98 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.43 4.31 9.10 -74.06 -0.67 3.63 16 31 H 0.09 1.48 7.71 -2.39 -0.02 1.46 16 32 H 0.08 1.28 7.61 -2.39 -0.02 1.26 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.35 4.74 8.92 -89.69 -0.80 3.94 16 36 H 0.06 1.15 7.55 -2.39 -0.02 1.13 16 37 H 0.08 2.07 6.06 -2.39 -0.01 2.05 16 Total: -1.00 -75.26 299.28 0.83 -74.43 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -0.40 Total: 9.76 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 3.08 Total: -29.37 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -3.53 Total: -75.06 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.34 Total: -27.94 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -75.26 0.83 -74.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691693725.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.262 kcal (2) G-P(sol) polarization free energy of solvation -75.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds