Wall clock time and date at job start Mon Mar 30 2020 03:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00105 * 2 1 4 4 C 1.52999 * 109.47302 * 270.00862 * 3 2 1 5 5 H 1.08997 * 110.55697 * 59.29621 * 4 3 2 6 6 C 1.54998 * 110.61682 * 182.17796 * 4 3 2 7 7 C 1.54804 * 102.09229 * 155.52232 * 6 4 3 8 8 C 1.54106 * 104.18744 * 339.11639 * 7 6 4 9 9 C 1.53000 * 109.87746 * 117.39824 * 8 7 6 10 10 C 1.52998 * 109.87806 * 238.39668 * 8 7 6 11 11 O 1.43882 * 107.37567 * 358.10199 * 8 7 6 12 12 C 1.34781 * 120.00134 * 180.02562 * 2 1 3 13 13 O 1.21692 * 119.99654 * 179.97438 * 12 2 1 14 14 C 1.46370 * 120.00033 * 359.97438 * 12 2 1 15 15 H 1.08003 * 120.00183 * 4.72354 * 14 12 2 16 16 C 1.40048 * 119.99867 * 184.72589 * 14 12 2 17 17 N 1.30667 * 120.00235 * 353.37876 * 16 14 12 18 18 Si 1.86802 * 119.99888 * 173.65410 * 16 14 12 19 19 H 1.48502 * 109.46978 * 94.98213 * 18 16 14 20 20 H 1.48500 * 109.47131 * 214.98256 * 18 16 14 21 21 H 1.48505 * 109.47111 * 334.98266 * 18 16 14 22 22 H 1.08999 * 109.46904 * 269.99139 * 1 2 3 23 23 H 1.08997 * 109.47362 * 29.99447 * 1 2 3 24 24 H 1.08998 * 109.46957 * 149.99789 * 1 2 3 25 25 H 1.09006 * 109.46525 * 30.00540 * 3 2 1 26 26 H 1.08997 * 109.47195 * 150.00170 * 3 2 1 27 27 H 1.09000 * 110.90353 * 273.71881 * 6 4 3 28 28 H 1.09001 * 110.90714 * 37.32055 * 6 4 3 29 29 H 1.09001 * 110.48940 * 97.79521 * 7 6 4 30 30 H 1.09006 * 110.48870 * 220.30934 * 7 6 4 31 31 H 1.08997 * 109.47551 * 60.00023 * 9 8 7 32 32 H 1.08995 * 109.47167 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.47005 * 299.99902 * 9 8 7 34 34 H 1.09000 * 109.47261 * 59.99521 * 10 8 7 35 35 H 1.08996 * 109.47323 * 180.02562 * 10 8 7 36 36 H 1.09000 * 109.47281 * 300.00011 * 10 8 7 37 37 H 0.97002 * 120.00455 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 -1.4425 5 1 1.5105 1.8344 -1.9769 6 6 3.2745 3.0242 -1.4738 7 6 3.9483 2.9520 -2.8656 8 6 3.9012 1.4556 -3.2309 9 6 3.0519 1.2532 -4.4873 10 6 5.3192 0.9341 -3.4722 11 8 3.3018 0.7613 -2.1223 12 6 2.1389 -1.1672 -0.0005 13 8 3.3558 -1.1671 -0.0010 14 6 1.4071 -2.4349 -0.0005 15 1 0.3298 -2.4365 -0.0771 16 6 2.1039 -3.6456 0.0989 17 7 3.4100 -3.6528 0.0612 18 14 1.1658 -5.2511 0.2775 19 1 0.9874 -5.8716 -1.0599 20 1 1.9289 -6.1754 1.1542 21 1 -0.1647 -4.9826 0.8801 22 1 -0.3633 -0.0002 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0283 0.5140 26 1 3.1499 1.1384 0.5138 27 1 2.6210 3.8937 -1.4026 28 1 4.0214 3.0346 -0.6800 29 1 3.3872 3.5399 -3.5921 30 1 4.9795 3.3006 -2.8088 31 1 3.4887 1.8119 -5.3150 32 1 3.0234 0.1933 -4.7398 33 1 2.0388 1.6104 -4.3024 34 1 5.9134 1.0652 -2.5678 35 1 5.2782 -0.1240 -3.7304 36 1 5.7763 1.4900 -4.2909 37 1 3.8926 -4.4915 0.1297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691897815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:31 Heat of formation + Delta-G solvation = -85.435532 kcal Electronic energy + Delta-G solvation = -18490.622779 eV Core-core repulsion = 15653.978096 eV Total energy + Delta-G solvation = -2836.644683 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.45854 -37.29931 -34.00607 -32.49013 -32.27552 -31.58570 -28.30397 -27.06863 -25.90653 -25.10199 -22.90224 -20.82081 -19.63948 -18.92799 -16.56814 -15.84995 -15.31120 -15.08115 -14.63787 -14.31616 -13.97851 -13.42987 -13.31924 -13.08401 -12.38618 -12.32338 -11.85986 -11.79216 -11.51253 -11.33304 -11.26058 -11.15655 -11.05280 -10.93408 -10.83403 -10.57157 -10.39716 -10.23651 -10.11683 -9.95423 -8.99406 -8.71363 -7.36324 -7.03122 -6.05527 -4.48498 3.20035 3.27043 3.30751 4.16612 4.27569 4.65469 4.79655 4.86966 5.04570 5.14219 5.40823 5.45995 5.57138 5.76235 5.77463 5.86527 5.88873 5.93039 6.00046 6.03725 6.10996 6.15051 6.20119 6.28037 6.39538 6.52150 6.53980 6.61848 6.63661 6.74893 7.57181 7.62660 7.84062 8.28782 8.49260 9.16346 9.61428 10.74281 10.96608 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028965 B = 0.007419 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.442025 B = 3772.975926 C = 4215.439309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.647 5.647 3 C 0.133 3.867 4 C 0.063 3.937 5 H 0.055 0.945 6 C -0.149 4.149 7 C -0.143 4.143 8 C 0.089 3.911 9 C -0.159 4.159 10 C -0.138 4.138 11 O -0.320 6.320 12 C 0.562 3.438 13 O -0.559 6.559 14 C -0.546 4.546 15 H 0.069 0.931 16 C 0.089 3.911 17 N -0.767 5.767 18 Si 0.901 3.099 19 H -0.274 1.274 20 H -0.280 1.280 21 H -0.265 1.265 22 H 0.029 0.971 23 H 0.036 0.964 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.254 11.397 -5.303 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.385 5.385 3 C 0.008 3.992 4 C 0.003 3.997 5 H 0.073 0.927 6 C -0.188 4.188 7 C -0.181 4.181 8 C 0.049 3.951 9 C -0.216 4.216 10 C -0.195 4.195 11 O -0.238 6.238 12 C 0.367 3.633 13 O -0.439 6.439 14 C -0.583 4.583 15 H 0.087 0.913 16 C -0.131 4.131 17 N -0.396 5.396 18 Si 0.726 3.274 19 H -0.200 1.200 20 H -0.205 1.205 21 H -0.189 1.189 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.360 11.037 -5.233 12.290 hybrid contribution -0.719 -0.508 -0.090 0.885 sum -2.079 10.529 -5.323 11.979 Atomic orbital electron populations 1.21361 0.82626 1.00796 0.99330 1.47984 1.04765 1.05320 1.80465 1.21032 0.98236 0.87182 0.92736 1.23611 0.93035 0.87322 0.95686 0.92669 1.23140 0.99792 0.98372 0.97464 1.22994 1.01393 0.96588 0.97113 1.22089 0.93777 0.90767 0.88512 1.22228 0.99798 1.02554 0.97054 1.21816 0.94464 1.01885 1.01357 1.89373 1.60941 1.32663 1.40846 1.18131 0.87044 0.81991 0.76155 1.90603 1.13767 1.85943 1.53628 1.20987 0.93798 0.89544 1.53956 0.91321 1.25689 0.94540 0.99968 0.92865 1.70042 1.07115 1.26789 1.35657 0.86467 0.80349 0.82028 0.78537 1.19982 1.20511 1.18936 0.95218 0.94503 0.91147 0.91879 0.90311 0.90999 0.90523 0.91304 0.90924 0.92491 0.91878 0.92797 0.91974 0.91825 0.92357 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.99 10.18 59.85 0.61 2.60 16 2 N -0.65 -15.34 2.86 -183.25 -0.52 -15.86 16 3 C 0.13 2.68 5.21 -4.04 -0.02 2.66 16 4 C 0.06 1.16 3.54 -25.68 -0.09 1.07 16 5 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 6 C -0.15 -2.12 6.59 -24.73 -0.16 -2.28 16 7 C -0.14 -1.93 6.27 -25.20 -0.16 -2.09 16 8 C 0.09 1.49 1.20 -90.04 -0.11 1.38 16 9 C -0.16 -2.37 8.60 37.16 0.32 -2.05 16 10 C -0.14 -2.21 8.68 37.16 0.32 -1.89 16 11 O -0.32 -7.08 9.44 -40.76 -0.38 -7.46 16 12 C 0.56 16.55 7.24 -12.99 -0.09 16.46 16 13 O -0.56 -18.50 13.90 -0.34 0.00 -18.51 16 14 C -0.55 -15.92 8.76 -35.63 -0.31 -16.23 16 15 H 0.07 1.84 5.96 -52.48 -0.31 1.53 16 16 C 0.09 2.55 5.49 -17.37 -0.10 2.45 16 17 N -0.77 -23.67 11.85 55.55 0.66 -23.02 16 18 Si 0.90 20.75 29.56 -169.99 -5.03 15.72 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.04 0.58 8.07 -51.93 -0.42 0.16 16 24 H 0.07 1.42 6.04 -51.93 -0.31 1.11 16 25 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 26 H 0.08 1.79 7.42 -51.93 -0.39 1.40 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 29 H 0.07 0.80 7.70 -51.93 -0.40 0.40 16 30 H 0.07 0.89 7.70 -51.93 -0.40 0.49 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.27 7.45 8.29 -40.82 -0.34 7.11 16 LS Contribution 301.23 15.07 4.54 4.54 Total: -1.00 -35.71 301.23 -6.54 -42.25 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.00 Total: 0.25 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 0.21 Total: 2.08 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.13 Total: -38.88 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.39 Total: -25.97 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.71 -6.54 -42.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691897815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.185 kcal (2) G-P(sol) polarization free energy of solvation -35.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds