Wall clock time and date at job start Mon Mar 30 2020 03:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 120.00105 * 2 1 4 4 C 1.52999 * 109.47302 * 270.00862 * 3 2 1 5 5 H 1.08997 * 110.55697 * 59.29621 * 4 3 2 6 6 C 1.54998 * 110.61682 * 182.17796 * 4 3 2 7 7 C 1.54804 * 102.09229 * 155.52232 * 6 4 3 8 8 C 1.54106 * 104.18744 * 339.11639 * 7 6 4 9 9 C 1.53000 * 109.87746 * 117.39824 * 8 7 6 10 10 C 1.52998 * 109.87806 * 238.39668 * 8 7 6 11 11 O 1.43882 * 107.37567 * 358.10199 * 8 7 6 12 12 C 1.34781 * 120.00134 * 180.02562 * 2 1 3 13 13 O 1.21692 * 119.99654 * 179.97438 * 12 2 1 14 14 C 1.46370 * 120.00033 * 359.97438 * 12 2 1 15 15 H 1.08003 * 120.00183 * 4.72354 * 14 12 2 16 16 C 1.40048 * 119.99867 * 184.72589 * 14 12 2 17 17 N 1.30667 * 120.00235 * 353.37876 * 16 14 12 18 18 Si 1.86802 * 119.99888 * 173.65410 * 16 14 12 19 19 H 1.48502 * 109.46978 * 94.98213 * 18 16 14 20 20 H 1.48500 * 109.47131 * 214.98256 * 18 16 14 21 21 H 1.48505 * 109.47111 * 334.98266 * 18 16 14 22 22 H 1.08999 * 109.46904 * 269.99139 * 1 2 3 23 23 H 1.08997 * 109.47362 * 29.99447 * 1 2 3 24 24 H 1.08998 * 109.46957 * 149.99789 * 1 2 3 25 25 H 1.09006 * 109.46525 * 30.00540 * 3 2 1 26 26 H 1.08997 * 109.47195 * 150.00170 * 3 2 1 27 27 H 1.09000 * 110.90353 * 273.71881 * 6 4 3 28 28 H 1.09001 * 110.90714 * 37.32055 * 6 4 3 29 29 H 1.09001 * 110.48940 * 97.79521 * 7 6 4 30 30 H 1.09006 * 110.48870 * 220.30934 * 7 6 4 31 31 H 1.08997 * 109.47551 * 60.00023 * 9 8 7 32 32 H 1.08995 * 109.47167 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.47005 * 299.99902 * 9 8 7 34 34 H 1.09000 * 109.47261 * 59.99521 * 10 8 7 35 35 H 1.08996 * 109.47323 * 180.02562 * 10 8 7 36 36 H 1.09000 * 109.47281 * 300.00011 * 10 8 7 37 37 H 0.97002 * 120.00455 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 -1.4425 5 1 1.5105 1.8344 -1.9769 6 6 3.2745 3.0242 -1.4738 7 6 3.9483 2.9520 -2.8656 8 6 3.9012 1.4556 -3.2309 9 6 3.0519 1.2532 -4.4873 10 6 5.3192 0.9341 -3.4722 11 8 3.3018 0.7613 -2.1223 12 6 2.1389 -1.1672 -0.0005 13 8 3.3558 -1.1671 -0.0010 14 6 1.4071 -2.4349 -0.0005 15 1 0.3298 -2.4365 -0.0771 16 6 2.1039 -3.6456 0.0989 17 7 3.4100 -3.6528 0.0612 18 14 1.1658 -5.2511 0.2775 19 1 0.9874 -5.8716 -1.0599 20 1 1.9289 -6.1754 1.1542 21 1 -0.1647 -4.9826 0.8801 22 1 -0.3633 -0.0002 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3633 -0.8900 -0.5139 25 1 1.6084 2.0283 0.5140 26 1 3.1499 1.1384 0.5138 27 1 2.6210 3.8937 -1.4026 28 1 4.0214 3.0346 -0.6800 29 1 3.3872 3.5399 -3.5921 30 1 4.9795 3.3006 -2.8088 31 1 3.4887 1.8119 -5.3150 32 1 3.0234 0.1933 -4.7398 33 1 2.0388 1.6104 -4.3024 34 1 5.9134 1.0652 -2.5678 35 1 5.2782 -0.1240 -3.7304 36 1 5.7763 1.4900 -4.2909 37 1 3.8926 -4.4915 0.1297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691897815.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:31 Heat of formation + Delta-G solvation = -110.555976 kcal Electronic energy + Delta-G solvation = -18491.712083 eV Core-core repulsion = 15653.978096 eV Total energy + Delta-G solvation = -2837.733987 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.82704 -39.27592 -35.91132 -34.50315 -33.93523 -32.91018 -29.88789 -28.30792 -27.93988 -26.73674 -24.40518 -22.20701 -21.07594 -20.71468 -18.43421 -17.71932 -17.08389 -16.49166 -16.23788 -15.91683 -15.75784 -14.96093 -14.68803 -14.36502 -14.19180 -13.71282 -13.31885 -13.21864 -13.12909 -13.02453 -12.93615 -12.71170 -12.60569 -12.48288 -12.39797 -12.13722 -12.01298 -11.83195 -11.51598 -11.44980 -10.87577 -10.40607 -9.61597 -8.93711 -8.21819 -6.75347 1.38147 1.40357 1.55454 2.26123 2.55887 2.85599 3.15293 3.63925 3.76782 3.88192 3.96167 4.12171 4.24471 4.29000 4.45926 4.55475 4.59895 4.65419 4.68403 4.80390 4.83087 4.91010 4.94935 4.97980 5.04531 5.05693 5.12792 5.27806 5.28837 5.41037 5.41875 5.84460 6.20009 6.40144 6.54540 6.94692 7.55183 8.60274 8.80126 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028965 B = 0.007419 C = 0.006641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.442025 B = 3772.975926 C = 4215.439309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.652 5.652 3 C 0.129 3.871 4 C 0.058 3.942 5 H 0.066 0.934 6 C -0.140 4.140 7 C -0.132 4.132 8 C 0.070 3.930 9 C -0.152 4.152 10 C -0.136 4.136 11 O -0.380 6.380 12 C 0.546 3.454 13 O -0.612 6.612 14 C -0.576 4.576 15 H 0.087 0.913 16 C 0.027 3.973 17 N -0.823 5.823 18 Si 0.992 3.008 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.247 1.247 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.107 0.893 26 H 0.040 0.960 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.035 0.965 33 H 0.057 0.943 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.098 0.902 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.303 12.990 -6.043 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.389 5.389 3 C 0.005 3.995 4 C 0.000 4.000 5 H 0.084 0.916 6 C -0.178 4.178 7 C -0.170 4.170 8 C 0.031 3.969 9 C -0.209 4.209 10 C -0.193 4.193 11 O -0.300 6.300 12 C 0.350 3.650 13 O -0.497 6.497 14 C -0.612 4.612 15 H 0.105 0.895 16 C -0.187 4.187 17 N -0.453 5.453 18 Si 0.811 3.189 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.170 1.170 22 H 0.063 0.937 23 H 0.096 0.904 24 H 0.075 0.925 25 H 0.125 0.875 26 H 0.058 0.942 27 H 0.128 0.872 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.116 0.884 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.460 12.689 -5.976 14.446 hybrid contribution -0.082 -0.925 0.135 0.938 sum -3.542 11.764 -5.841 13.603 Atomic orbital electron populations 1.21534 0.79808 1.02170 1.00706 1.47831 1.06702 1.05159 1.79196 1.21275 0.96844 0.86651 0.94688 1.23680 0.93827 0.88681 0.93858 0.91633 1.23108 0.99599 0.97326 0.97739 1.22965 1.02780 0.94109 0.97143 1.22470 0.93597 0.92846 0.87987 1.22178 1.00061 1.01363 0.97333 1.21849 0.94928 1.00650 1.01920 1.89338 1.62046 1.35648 1.42918 1.18480 0.86701 0.83995 0.75791 1.90552 1.15984 1.87301 1.55868 1.21535 0.94909 0.90383 1.54390 0.89474 1.26960 0.95483 1.04661 0.91581 1.70232 1.09662 1.28333 1.37078 0.85106 0.79080 0.75735 0.78961 1.18976 1.19806 1.16990 0.93694 0.90401 0.92495 0.87453 0.94185 0.87223 0.91504 0.88324 0.89554 0.89027 0.94620 0.92389 0.93701 0.94901 0.88360 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.72 10.18 127.77 1.30 5.02 16 2 N -0.65 -31.14 2.86 -851.88 -2.43 -33.57 16 3 C 0.13 5.19 5.21 86.38 0.45 5.64 16 4 C 0.06 2.09 3.54 31.28 0.11 2.20 16 5 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 6 C -0.14 -3.61 6.59 31.89 0.21 -3.40 16 7 C -0.13 -3.17 6.27 31.58 0.20 -2.97 16 8 C 0.07 2.32 1.20 -10.42 -0.01 2.31 16 9 C -0.15 -4.34 8.60 71.98 0.62 -3.72 16 10 C -0.14 -4.46 8.68 71.98 0.62 -3.83 16 11 O -0.38 -17.30 9.44 -143.69 -1.36 -18.66 16 12 C 0.55 33.40 7.24 86.36 0.62 34.02 16 13 O -0.61 -43.00 13.90 0.97 0.01 -42.98 16 14 C -0.58 -34.32 8.76 24.83 0.22 -34.11 16 15 H 0.09 4.68 5.96 -2.91 -0.02 4.66 16 16 C 0.03 1.61 5.49 85.31 0.47 2.08 16 17 N -0.82 -53.04 11.85 21.83 0.26 -52.78 16 18 Si 0.99 43.08 29.56 68.60 2.03 45.11 16 19 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 22 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 24 H 0.06 2.24 6.04 -2.39 -0.01 2.22 16 25 H 0.11 3.24 8.07 -2.38 -0.02 3.22 16 26 H 0.04 1.90 7.42 -2.39 -0.02 1.88 16 27 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 1.85 8.06 -2.39 -0.02 1.83 16 29 H 0.10 1.80 7.70 -2.39 -0.02 1.78 16 30 H 0.09 1.84 7.70 -2.38 -0.02 1.82 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.06 1.58 8.12 -2.39 -0.02 1.56 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.27 15.82 8.29 -92.71 -0.77 15.05 16 Total: -1.00 -84.25 301.23 4.35 -79.89 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 1.03 Total: 19.76 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 4.81 Total: 3.23 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -2.18 Total: -86.35 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -1.34 Total: -61.64 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -84.25 4.35 -79.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691897815.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.663 kcal (2) G-P(sol) polarization free energy of solvation -84.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds