Wall clock time and date at job start Mon Mar 30 2020 03:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99951 * 2 1 4 4 C 1.53002 * 109.47509 * 89.99338 * 3 2 1 5 5 H 1.08993 * 110.55151 * 307.88088 * 4 3 2 6 6 C 1.54991 * 110.61707 * 184.99878 * 4 3 2 7 7 C 1.54810 * 102.09350 * 204.31975 * 6 4 3 8 8 C 1.54106 * 104.18526 * 20.88072 * 7 6 4 9 9 C 1.53001 * 109.87790 * 121.45619 * 8 7 6 10 10 C 1.53000 * 109.87811 * 242.60515 * 8 7 6 11 11 O 1.43745 * 107.29161 * 2.03378 * 8 7 6 12 12 C 1.34774 * 120.00154 * 179.97438 * 2 1 3 13 13 O 1.21685 * 120.00425 * 180.02562 * 12 2 1 14 14 C 1.46375 * 119.99729 * 0.02562 * 12 2 1 15 15 H 1.08005 * 120.00115 * 359.97438 * 14 12 2 16 16 C 1.40053 * 119.99970 * 179.97438 * 14 12 2 17 17 N 1.30666 * 119.99867 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 119.99912 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47227 * 60.00043 * 18 16 14 20 20 H 1.48507 * 109.46681 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.46923 * 299.99634 * 18 16 14 22 22 H 1.08999 * 109.46783 * 90.00374 * 1 2 3 23 23 H 1.08995 * 109.47443 * 210.00071 * 1 2 3 24 24 H 1.08999 * 109.47194 * 330.00908 * 1 2 3 25 25 H 1.09003 * 109.47231 * 329.98997 * 3 2 1 26 26 H 1.09001 * 109.47088 * 210.00037 * 3 2 1 27 27 H 1.09005 * 110.90880 * 86.12205 * 6 4 3 28 28 H 1.09001 * 110.94109 * 322.52741 * 6 4 3 29 29 H 1.09000 * 110.49118 * 262.21058 * 7 6 4 30 30 H 1.08996 * 110.60415 * 139.61242 * 7 6 4 31 31 H 1.09004 * 109.47138 * 59.99920 * 9 8 7 32 32 H 1.08993 * 109.47138 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.47143 * 300.00236 * 9 8 7 34 34 H 1.08999 * 109.46755 * 60.00299 * 10 8 7 35 35 H 1.09006 * 109.46851 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.47182 * 300.00041 * 10 8 7 37 37 H 0.97005 * 120.00053 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 1.4425 5 1 1.5231 1.7122 2.0120 6 6 3.1151 3.1113 1.4752 7 6 3.8409 3.0948 2.8425 8 6 3.9825 1.5972 3.1769 9 6 5.4598 1.2418 3.3571 10 6 3.2071 1.2740 4.4557 11 8 3.4334 0.8590 2.0725 12 6 2.1389 -1.1672 0.0005 13 8 3.3558 -1.1672 0.0010 14 6 1.4070 -2.4348 0.0005 15 1 0.3270 -2.4348 0.0005 16 6 2.1073 -3.6477 0.0005 17 7 3.4139 -3.6477 0.0000 18 14 1.1732 -5.2654 0.0012 19 1 0.3190 -5.3444 -1.2109 20 1 2.1383 -6.3942 0.0005 21 1 0.3200 -5.3438 1.2141 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 1.6085 2.0283 -0.5140 26 1 3.1499 1.1384 -0.5138 27 1 2.3620 3.8987 1.4440 28 1 3.8276 3.2243 0.6581 29 1 3.2403 3.5995 3.5994 30 1 4.8222 3.5621 2.7615 31 1 5.8791 1.8333 4.1710 32 1 5.5523 0.1817 3.5928 33 1 6.0003 1.4573 2.4354 34 1 2.1533 1.5122 4.3115 35 1 3.3114 0.2136 4.6856 36 1 3.6039 1.8658 5.2805 37 1 3.8990 -4.4878 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691897816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:33 Heat of formation + Delta-G solvation = -85.869743 kcal Electronic energy + Delta-G solvation = -18452.794529 eV Core-core repulsion = 15616.131017 eV Total energy + Delta-G solvation = -2836.663512 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.48455 -37.31929 -34.01975 -32.51148 -32.28009 -31.59254 -28.30966 -27.09403 -25.91208 -25.11342 -22.90716 -20.83889 -19.64907 -18.95355 -16.56895 -15.85765 -15.31586 -15.09629 -14.64603 -14.33959 -13.99370 -13.44351 -13.32672 -13.08710 -12.38073 -12.34394 -11.88611 -11.79717 -11.50585 -11.34342 -11.27348 -11.16492 -11.07271 -10.97374 -10.85001 -10.55107 -10.41665 -10.24725 -10.12224 -9.97464 -9.01294 -8.72209 -7.37632 -7.04885 -6.04955 -4.50024 3.21893 3.26335 3.28084 4.16603 4.26295 4.65952 4.75604 4.85553 5.02999 5.13593 5.40239 5.44459 5.56090 5.76521 5.77923 5.85139 5.87600 5.92106 5.97788 6.03462 6.10098 6.13394 6.18493 6.26912 6.37232 6.50792 6.52719 6.60848 6.61074 6.75777 7.55949 7.62273 7.82773 8.27147 8.48057 9.15372 9.60129 10.74019 10.95732 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028684 B = 0.007362 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.903636 B = 3802.199843 C = 4258.625624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.648 5.648 3 C 0.133 3.867 4 C 0.064 3.936 5 H 0.057 0.943 6 C -0.150 4.150 7 C -0.144 4.144 8 C 0.088 3.912 9 C -0.138 4.138 10 C -0.159 4.159 11 O -0.322 6.322 12 C 0.560 3.440 13 O -0.558 6.558 14 C -0.546 4.546 15 H 0.068 0.932 16 C 0.088 3.912 17 N -0.767 5.767 18 Si 0.903 3.097 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.269 1.269 22 H 0.029 0.971 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 11.565 5.358 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.387 5.387 3 C 0.008 3.992 4 C 0.004 3.996 5 H 0.075 0.925 6 C -0.188 4.188 7 C -0.181 4.181 8 C 0.048 3.952 9 C -0.196 4.196 10 C -0.217 4.217 11 O -0.241 6.241 12 C 0.365 3.635 13 O -0.438 6.438 14 C -0.583 4.583 15 H 0.086 0.914 16 C -0.131 4.131 17 N -0.396 5.396 18 Si 0.728 3.272 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.194 1.194 22 H 0.048 0.952 23 H 0.089 0.911 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.434 11.211 5.283 12.476 hybrid contribution -0.759 -0.525 0.192 0.943 sum -2.194 10.686 5.475 12.206 Atomic orbital electron populations 1.21367 0.82613 1.00841 0.99355 1.48015 1.04791 1.05366 1.80491 1.21014 0.98278 0.87108 0.92789 1.23634 0.91842 0.87881 0.96196 0.92522 1.23144 0.99979 0.98081 0.97619 1.23001 1.01085 0.96692 0.97358 1.22077 0.94240 0.90285 0.88569 1.21825 0.93912 1.02343 1.01475 1.22224 1.00164 1.02424 0.96842 1.89336 1.54600 1.37403 1.42739 1.18150 0.87080 0.82005 0.76284 1.90612 1.13720 1.85906 1.53576 1.20963 0.93471 0.89474 1.54398 0.91370 1.25696 0.94557 1.00052 0.92796 1.70023 1.06930 1.27012 1.35669 0.86522 0.79884 0.81517 0.79305 1.19391 1.20651 1.19415 0.95212 0.91108 0.94466 0.91812 0.90203 0.90971 0.90564 0.91277 0.90927 0.92300 0.91816 0.92031 0.92749 0.91855 0.92469 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.97 10.15 59.85 0.61 2.58 16 2 N -0.65 -15.35 2.87 -183.25 -0.53 -15.87 16 3 C 0.13 2.68 5.17 -4.04 -0.02 2.66 16 4 C 0.06 1.18 3.52 -25.68 -0.09 1.09 16 5 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 6 C -0.15 -2.10 6.58 -24.73 -0.16 -2.27 16 7 C -0.14 -1.91 6.28 -25.20 -0.16 -2.07 16 8 C 0.09 1.47 1.19 -90.04 -0.11 1.37 16 9 C -0.14 -2.16 8.67 37.16 0.32 -1.84 16 10 C -0.16 -2.38 8.61 37.16 0.32 -2.06 16 11 O -0.32 -7.10 9.73 -37.62 -0.37 -7.47 16 12 C 0.56 16.51 7.44 -12.99 -0.10 16.41 16 13 O -0.56 -18.51 13.94 2.81 0.04 -18.47 16 14 C -0.55 -15.90 8.74 -35.63 -0.31 -16.22 16 15 H 0.07 1.81 6.00 -52.48 -0.31 1.50 16 16 C 0.09 2.54 5.50 -17.37 -0.10 2.45 16 17 N -0.77 -23.71 11.83 55.55 0.66 -23.05 16 18 Si 0.90 20.75 29.56 -169.99 -5.02 15.73 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 1.42 6.09 -51.93 -0.32 1.10 16 24 H 0.04 0.58 8.07 -51.93 -0.42 0.17 16 25 H 0.06 1.04 8.07 -51.93 -0.42 0.62 16 26 H 0.08 1.82 7.42 -51.93 -0.39 1.44 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 29 H 0.07 0.80 7.70 -51.93 -0.40 0.40 16 30 H 0.07 0.87 7.70 -51.93 -0.40 0.47 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.27 7.51 8.29 -40.82 -0.34 7.17 16 LS Contribution 301.72 15.07 4.55 4.55 Total: -1.00 -35.72 301.72 -6.48 -42.20 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.01 Total: 0.29 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 0.21 Total: 2.10 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.13 Total: -38.92 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.33 Total: -25.94 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.72 -6.48 -42.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691897816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.671 kcal (2) G-P(sol) polarization free energy of solvation -35.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds