Wall clock time and date at job start Mon Mar 30 2020 03:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99951 * 2 1 4 4 C 1.53002 * 109.47509 * 89.99338 * 3 2 1 5 5 H 1.08993 * 110.55151 * 307.88088 * 4 3 2 6 6 C 1.54991 * 110.61707 * 184.99878 * 4 3 2 7 7 C 1.54810 * 102.09350 * 204.31975 * 6 4 3 8 8 C 1.54106 * 104.18526 * 20.88072 * 7 6 4 9 9 C 1.53001 * 109.87790 * 121.45619 * 8 7 6 10 10 C 1.53000 * 109.87811 * 242.60515 * 8 7 6 11 11 O 1.43745 * 107.29161 * 2.03378 * 8 7 6 12 12 C 1.34774 * 120.00154 * 179.97438 * 2 1 3 13 13 O 1.21685 * 120.00425 * 180.02562 * 12 2 1 14 14 C 1.46375 * 119.99729 * 0.02562 * 12 2 1 15 15 H 1.08005 * 120.00115 * 359.97438 * 14 12 2 16 16 C 1.40053 * 119.99970 * 179.97438 * 14 12 2 17 17 N 1.30666 * 119.99867 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 119.99912 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47227 * 60.00043 * 18 16 14 20 20 H 1.48507 * 109.46681 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.46923 * 299.99634 * 18 16 14 22 22 H 1.08999 * 109.46783 * 90.00374 * 1 2 3 23 23 H 1.08995 * 109.47443 * 210.00071 * 1 2 3 24 24 H 1.08999 * 109.47194 * 330.00908 * 1 2 3 25 25 H 1.09003 * 109.47231 * 329.98997 * 3 2 1 26 26 H 1.09001 * 109.47088 * 210.00037 * 3 2 1 27 27 H 1.09005 * 110.90880 * 86.12205 * 6 4 3 28 28 H 1.09001 * 110.94109 * 322.52741 * 6 4 3 29 29 H 1.09000 * 110.49118 * 262.21058 * 7 6 4 30 30 H 1.08996 * 110.60415 * 139.61242 * 7 6 4 31 31 H 1.09004 * 109.47138 * 59.99920 * 9 8 7 32 32 H 1.08993 * 109.47138 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.47143 * 300.00236 * 9 8 7 34 34 H 1.08999 * 109.46755 * 60.00299 * 10 8 7 35 35 H 1.09006 * 109.46851 * 179.97438 * 10 8 7 36 36 H 1.08997 * 109.47182 * 300.00041 * 10 8 7 37 37 H 0.97005 * 120.00053 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 1.4425 5 1 1.5231 1.7122 2.0120 6 6 3.1151 3.1113 1.4752 7 6 3.8409 3.0948 2.8425 8 6 3.9825 1.5972 3.1769 9 6 5.4598 1.2418 3.3571 10 6 3.2071 1.2740 4.4557 11 8 3.4334 0.8590 2.0725 12 6 2.1389 -1.1672 0.0005 13 8 3.3558 -1.1672 0.0010 14 6 1.4070 -2.4348 0.0005 15 1 0.3270 -2.4348 0.0005 16 6 2.1073 -3.6477 0.0005 17 7 3.4139 -3.6477 0.0000 18 14 1.1732 -5.2654 0.0012 19 1 0.3190 -5.3444 -1.2109 20 1 2.1383 -6.3942 0.0005 21 1 0.3200 -5.3438 1.2141 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 1.6085 2.0283 -0.5140 26 1 3.1499 1.1384 -0.5138 27 1 2.3620 3.8987 1.4440 28 1 3.8276 3.2243 0.6581 29 1 3.2403 3.5995 3.5994 30 1 4.8222 3.5621 2.7615 31 1 5.8791 1.8333 4.1710 32 1 5.5523 0.1817 3.5928 33 1 6.0003 1.4573 2.4354 34 1 2.1533 1.5122 4.3115 35 1 3.3114 0.2136 4.6856 36 1 3.6039 1.8658 5.2805 37 1 3.8990 -4.4878 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691897816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:33 Heat of formation + Delta-G solvation = -111.207040 kcal Electronic energy + Delta-G solvation = -18453.893237 eV Core-core repulsion = 15616.131017 eV Total energy + Delta-G solvation = -2837.762219 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.84635 -39.29838 -35.92635 -34.50766 -33.94710 -32.90982 -29.89163 -28.32176 -27.94269 -26.74155 -24.40588 -22.21803 -21.06655 -20.75106 -18.43803 -17.72421 -17.09588 -16.49930 -16.21305 -15.93847 -15.78130 -14.95271 -14.70288 -14.35890 -14.20695 -13.69391 -13.32613 -13.23394 -13.13935 -13.02755 -12.93470 -12.69365 -12.59216 -12.52449 -12.39669 -12.12797 -12.04964 -11.85775 -11.51495 -11.45060 -10.87244 -10.42286 -9.63195 -8.95552 -8.21238 -6.76924 1.37892 1.42678 1.53041 2.25816 2.55627 2.87037 3.10513 3.64032 3.76423 3.88222 3.95765 4.13078 4.23991 4.28415 4.44879 4.55344 4.59704 4.65234 4.68044 4.80238 4.82597 4.91192 4.94508 4.97409 5.04515 5.05681 5.12621 5.27463 5.28741 5.40314 5.40577 5.83273 6.18975 6.40346 6.52620 6.93771 7.53888 8.59662 8.79183 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.028684 B = 0.007362 C = 0.006573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.903636 B = 3802.199843 C = 4258.625624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.654 5.654 3 C 0.130 3.870 4 C 0.059 3.941 5 H 0.062 0.938 6 C -0.139 4.139 7 C -0.133 4.133 8 C 0.070 3.930 9 C -0.136 4.136 10 C -0.153 4.153 11 O -0.382 6.382 12 C 0.543 3.457 13 O -0.612 6.612 14 C -0.576 4.576 15 H 0.088 0.912 16 C 0.027 3.973 17 N -0.824 5.824 18 Si 0.993 3.007 19 H -0.253 1.253 20 H -0.276 1.276 21 H -0.256 1.256 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.040 0.960 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.032 0.968 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.034 0.966 36 H 0.092 0.908 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 13.149 6.186 15.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.390 5.390 3 C 0.006 3.994 4 C 0.001 3.999 5 H 0.080 0.920 6 C -0.177 4.177 7 C -0.170 4.170 8 C 0.031 3.969 9 C -0.194 4.194 10 C -0.210 4.210 11 O -0.302 6.302 12 C 0.348 3.652 13 O -0.496 6.496 14 C -0.612 4.612 15 H 0.106 0.894 16 C -0.187 4.187 17 N -0.453 5.453 18 Si 0.812 3.188 19 H -0.176 1.176 20 H -0.201 1.201 21 H -0.180 1.180 22 H 0.063 0.937 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.126 0.874 26 H 0.058 0.942 27 H 0.127 0.873 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.111 0.889 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.593 12.855 6.112 14.680 hybrid contribution -0.106 -0.937 -0.072 0.946 sum -3.699 11.918 6.039 13.863 Atomic orbital electron populations 1.21546 0.79733 1.02264 1.00755 1.47868 1.06767 1.05172 1.79219 1.21253 0.96852 0.86610 0.94701 1.23682 0.92012 0.89905 0.94350 0.92004 1.23108 1.00508 0.96116 0.97996 1.22972 1.02506 0.94078 0.97470 1.22466 0.94203 0.92392 0.87885 1.21856 0.94186 1.01118 1.02205 1.22185 1.00306 1.01236 0.97311 1.89302 1.55772 1.40315 1.44812 1.18519 0.86744 0.84041 0.75928 1.90561 1.15969 1.87280 1.55838 1.21524 0.94664 0.90268 1.54755 0.89378 1.26973 0.95475 1.04857 0.91430 1.70224 1.09487 1.28498 1.37137 0.85159 0.78278 0.75121 0.80242 1.17642 1.20053 1.17997 0.93672 0.92391 0.90336 0.87357 0.94172 0.87301 0.91134 0.88486 0.89309 0.88351 0.94849 0.93364 0.92610 0.94705 0.88924 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.66 10.15 127.77 1.30 4.96 16 2 N -0.65 -31.19 2.87 -851.90 -2.45 -33.64 16 3 C 0.13 5.22 5.17 86.38 0.45 5.67 16 4 C 0.06 2.14 3.52 31.28 0.11 2.25 16 5 H 0.06 2.12 8.11 -2.39 -0.02 2.10 16 6 C -0.14 -3.53 6.58 31.89 0.21 -3.32 16 7 C -0.13 -3.12 6.28 31.59 0.20 -2.92 16 8 C 0.07 2.29 1.19 -10.42 -0.01 2.28 16 9 C -0.14 -4.33 8.67 71.98 0.62 -3.70 16 10 C -0.15 -4.43 8.61 71.98 0.62 -3.81 16 11 O -0.38 -17.39 9.73 -146.69 -1.43 -18.82 16 12 C 0.54 33.27 7.44 86.36 0.64 33.91 16 13 O -0.61 -43.08 13.94 -2.01 -0.03 -43.11 16 14 C -0.58 -34.26 8.74 24.83 0.22 -34.04 16 15 H 0.09 4.69 6.00 -2.91 -0.02 4.67 16 16 C 0.03 1.58 5.50 85.31 0.47 2.05 16 17 N -0.82 -53.13 11.83 21.84 0.26 -52.88 16 18 Si 0.99 43.03 29.56 68.60 2.03 45.06 16 19 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 20 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 22 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.06 2.26 6.09 -2.39 -0.01 2.24 16 24 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 25 H 0.11 3.28 8.07 -2.39 -0.02 3.26 16 26 H 0.04 1.92 7.42 -2.39 -0.02 1.90 16 27 H 0.11 1.97 8.14 -2.38 -0.02 1.96 16 28 H 0.07 1.86 8.06 -2.39 -0.02 1.84 16 29 H 0.10 1.76 7.70 -2.39 -0.02 1.74 16 30 H 0.09 1.81 7.70 -2.39 -0.02 1.79 16 31 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.56 8.11 -2.39 -0.02 1.54 16 35 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.27 15.90 8.29 -92.70 -0.77 15.13 16 Total: -1.00 -84.41 301.72 4.24 -80.17 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 1.03 Total: 19.89 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 4.82 Total: 3.32 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -2.19 Total: -86.51 kcal Atomic # 8 Polarization: -60.48 SS G_CDS: -1.46 Total: -61.93 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -84.41 4.24 -80.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691897816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.033 kcal (2) G-P(sol) polarization free energy of solvation -84.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds