Wall clock time and date at job start Mon Mar 30 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46849 * 2 1 4 4 C 1.52998 * 109.47132 * 120.00008 * 2 1 3 5 5 C 1.53000 * 109.47132 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.46850 * 60.00001 * 5 4 2 7 7 N 1.46496 * 109.47125 * 180.02562 * 5 4 2 8 8 C 1.34781 * 119.99562 * 205.00197 * 7 5 4 9 9 O 1.21680 * 120.00376 * 359.97438 * 8 7 5 10 10 C 1.46379 * 119.99559 * 180.02562 * 8 7 5 11 11 H 1.08000 * 120.00281 * 6.75210 * 10 8 7 12 12 C 1.40046 * 119.99969 * 186.74904 * 10 8 7 13 13 N 1.30678 * 120.00068 * 6.79260 * 12 10 8 14 14 Si 1.86797 * 120.00145 * 186.79296 * 12 10 8 15 15 H 1.48500 * 109.47309 * 265.01928 * 14 12 10 16 16 H 1.48500 * 109.47052 * 25.02220 * 14 12 10 17 17 H 1.48500 * 109.47143 * 145.01797 * 14 12 10 18 18 C 1.53005 * 109.47079 * 300.00356 * 5 4 2 19 19 C 1.52998 * 109.47056 * 59.99805 * 18 5 4 20 20 H 1.09001 * 109.47037 * 60.00256 * 19 18 5 21 21 O 1.42904 * 109.46906 * 179.97438 * 19 18 5 22 22 C 1.52995 * 109.47014 * 240.00441 * 2 1 3 23 23 H 1.08998 * 109.47413 * 299.99603 * 1 2 3 24 24 H 1.08997 * 109.47569 * 60.00322 * 1 2 3 25 25 H 1.09001 * 109.47236 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47185 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47659 * 300.00329 * 3 2 1 28 28 H 1.09010 * 109.47097 * 60.00348 * 3 2 1 29 29 H 1.09005 * 109.46748 * 60.00506 * 4 2 1 30 30 H 1.08998 * 109.47289 * 300.00464 * 4 2 1 31 31 H 0.96999 * 120.00171 * 25.00566 * 7 5 4 32 32 H 0.96992 * 120.00478 * 180.02562 * 13 12 10 33 33 H 1.09005 * 109.46739 * 179.97438 * 18 5 4 34 34 H 1.08996 * 109.46990 * 299.99559 * 18 5 4 35 35 H 0.96705 * 114.00080 * 300.00151 * 21 19 18 36 36 H 1.09000 * 109.47424 * 299.99363 * 22 2 1 37 37 H 1.09000 * 109.47523 * 60.00004 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2495 6 1 3.9329 0.3071 1.2498 7 7 4.0583 -1.4118 2.4454 8 6 5.2801 -1.1257 2.9373 9 8 5.9777 -0.2938 2.3879 10 6 5.7683 -1.8167 4.1318 11 1 5.1989 -2.6308 4.5553 12 6 6.9738 -1.4221 4.7255 13 7 7.5955 -0.3560 4.2959 14 14 7.6930 -2.4198 6.1314 15 1 7.2713 -1.8266 7.4258 16 1 7.2045 -3.8195 6.0457 17 1 9.1752 -2.4064 6.0403 18 6 4.0805 -1.4415 0.0002 19 6 3.5705 -0.7202 -1.2489 20 1 3.9335 0.3076 -1.2487 21 8 4.0478 -1.3931 -2.4158 22 6 2.0400 -0.7211 -1.2493 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6767 -1.7490 1.2491 30 1 1.6766 -0.2075 2.1392 31 1 3.5024 -2.0753 2.8831 32 1 8.4305 -0.0829 4.7067 33 1 5.1706 -1.4407 0.0003 34 1 3.7176 -2.4693 0.0000 35 1 5.0119 -1.4306 -2.4815 36 1 1.6767 -1.7488 -1.2493 37 1 1.6767 -0.2073 -2.1392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693874957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:17 Heat of formation + Delta-G solvation = -118.667311 kcal Electronic energy + Delta-G solvation = -18175.107969 eV Core-core repulsion = 15337.022248 eV Total energy + Delta-G solvation = -2838.085721 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.76012 -37.03521 -36.03491 -33.58624 -32.33599 -30.65074 -28.76596 -27.26519 -26.24393 -25.99693 -21.93231 -21.17794 -19.40702 -18.44635 -17.21570 -16.76177 -15.38207 -15.28837 -14.60515 -14.30541 -14.19026 -14.00313 -13.69842 -13.14641 -12.73261 -12.35741 -12.22425 -12.06876 -11.85893 -11.50129 -11.30543 -11.17142 -11.07833 -10.82025 -10.69914 -10.51100 -10.42290 -10.28566 -10.23692 -9.75124 -9.56580 -8.84261 -7.60426 -7.49958 -6.21928 -4.63338 3.12966 3.20741 3.24789 4.09889 4.28671 4.57729 4.60653 4.84795 4.99644 5.21067 5.29588 5.39539 5.51981 5.61656 5.69148 5.71100 5.76263 5.77643 5.89719 5.95878 5.97920 6.03182 6.16872 6.19962 6.32554 6.40817 6.44982 6.52771 6.70871 6.87353 7.43210 7.82995 7.94591 8.12647 8.34471 9.02533 9.54810 10.59536 10.77961 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035863 B = 0.005850 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.569655 B = 4784.957168 C = 5087.353132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.058 4.058 3 C -0.150 4.150 4 C -0.116 4.116 5 C 0.158 3.842 6 H 0.079 0.921 7 N -0.762 5.762 8 C 0.558 3.442 9 O -0.583 6.583 10 C -0.548 4.548 11 H 0.067 0.933 12 C 0.090 3.910 13 N -0.770 5.770 14 Si 0.906 3.094 15 H -0.273 1.273 16 H -0.265 1.265 17 H -0.279 1.279 18 C -0.158 4.158 19 C 0.104 3.896 20 H 0.057 0.943 21 O -0.575 6.575 22 C -0.097 4.097 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.379 0.621 32 H 0.268 0.732 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.378 0.622 36 H 0.067 0.933 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.897 -0.376 -7.322 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.059 4.059 3 C -0.207 4.207 4 C -0.154 4.154 5 C 0.052 3.948 6 H 0.097 0.903 7 N -0.416 5.416 8 C 0.362 3.638 9 O -0.466 6.466 10 C -0.585 4.585 11 H 0.085 0.915 12 C -0.130 4.130 13 N -0.399 5.399 14 Si 0.731 3.269 15 H -0.199 1.199 16 H -0.189 1.189 17 H -0.204 1.204 18 C -0.197 4.197 19 C 0.045 3.955 20 H 0.075 0.925 21 O -0.381 6.381 22 C -0.135 4.135 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.210 0.790 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.225 0.775 36 H 0.086 0.914 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.854 0.316 -7.807 13.373 hybrid contribution 0.751 -0.816 1.081 1.549 sum -10.103 -0.500 -6.726 12.147 Atomic orbital electron populations 1.21832 0.94364 1.01680 1.01645 1.20429 0.95228 0.95634 0.94581 1.22032 1.02102 0.95031 1.01494 1.21906 0.95942 1.00393 0.97162 1.20434 0.91425 0.97452 0.85532 0.90302 1.46189 1.20135 1.45685 1.29587 1.18194 0.78796 0.82300 0.84523 1.90574 1.56456 1.37079 1.62539 1.20897 1.07169 1.18801 1.11654 0.91471 1.25681 0.96211 0.94117 0.96987 1.69988 1.13926 1.19926 1.36073 0.86388 0.78484 0.80815 0.81249 1.19869 1.18862 1.20397 1.22684 1.01981 1.00046 0.95030 1.21878 0.94372 0.94929 0.84301 0.92517 1.86407 1.26792 1.80584 1.44316 1.21512 0.93593 1.01052 0.97329 0.92468 0.92755 0.92694 0.91614 0.92881 0.92467 0.91911 0.91417 0.78960 0.92105 0.91169 0.91944 0.77517 0.91449 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.47 37.16 0.31 -1.11 16 2 C -0.06 -0.73 0.77 -154.51 -0.12 -0.84 16 3 C -0.15 -1.90 7.78 37.16 0.29 -1.61 16 4 C -0.12 -1.69 4.20 -26.73 -0.11 -1.80 16 5 C 0.16 2.97 2.18 -67.93 -0.15 2.82 16 6 H 0.08 1.69 5.86 -51.93 -0.30 1.39 16 7 N -0.76 -16.88 5.07 -55.22 -0.28 -17.16 16 8 C 0.56 15.71 7.68 -12.98 -0.10 15.61 16 9 O -0.58 -18.56 14.77 5.21 0.08 -18.48 16 10 C -0.55 -15.47 9.53 -35.63 -0.34 -15.81 16 11 H 0.07 1.74 7.86 -52.49 -0.41 1.33 16 12 C 0.09 2.50 5.48 -17.36 -0.10 2.41 16 13 N -0.77 -23.04 11.91 55.55 0.66 -22.38 16 14 Si 0.91 20.15 29.56 -169.99 -5.03 15.13 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.26 -5.72 7.11 56.52 0.40 -5.31 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 C -0.16 -2.80 5.12 -26.73 -0.14 -2.93 16 19 C 0.10 1.57 3.19 -26.71 -0.09 1.48 16 20 H 0.06 0.87 6.43 -51.93 -0.33 0.53 16 21 O -0.58 -8.47 13.32 -35.23 -0.47 -8.94 16 22 C -0.10 -1.28 4.39 -26.71 -0.12 -1.40 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.95 4.81 -51.93 -0.25 0.70 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.38 7.47 8.58 -40.82 -0.35 7.12 16 32 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.38 4.40 9.08 45.56 0.41 4.81 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 295.22 15.07 4.45 4.45 Total: -1.00 -33.68 295.22 -6.26 -39.94 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -5.02 Total: 10.65 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.65 Total: -3.19 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.38 Total: -39.54 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.39 Total: -27.42 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.68 -6.26 -39.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693874957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.732 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds