Wall clock time and date at job start Mon Mar 30 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46849 * 2 1 4 4 C 1.52998 * 109.47132 * 120.00008 * 2 1 3 5 5 C 1.53000 * 109.47132 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.46850 * 60.00001 * 5 4 2 7 7 N 1.46496 * 109.47125 * 180.02562 * 5 4 2 8 8 C 1.34781 * 119.99562 * 205.00197 * 7 5 4 9 9 O 1.21680 * 120.00376 * 359.97438 * 8 7 5 10 10 C 1.46379 * 119.99559 * 180.02562 * 8 7 5 11 11 H 1.08000 * 120.00281 * 6.75210 * 10 8 7 12 12 C 1.40046 * 119.99969 * 186.74904 * 10 8 7 13 13 N 1.30678 * 120.00068 * 6.79260 * 12 10 8 14 14 Si 1.86797 * 120.00145 * 186.79296 * 12 10 8 15 15 H 1.48500 * 109.47309 * 265.01928 * 14 12 10 16 16 H 1.48500 * 109.47052 * 25.02220 * 14 12 10 17 17 H 1.48500 * 109.47143 * 145.01797 * 14 12 10 18 18 C 1.53005 * 109.47079 * 300.00356 * 5 4 2 19 19 C 1.52998 * 109.47056 * 59.99805 * 18 5 4 20 20 H 1.09001 * 109.47037 * 60.00256 * 19 18 5 21 21 O 1.42904 * 109.46906 * 179.97438 * 19 18 5 22 22 C 1.52995 * 109.47014 * 240.00441 * 2 1 3 23 23 H 1.08998 * 109.47413 * 299.99603 * 1 2 3 24 24 H 1.08997 * 109.47569 * 60.00322 * 1 2 3 25 25 H 1.09001 * 109.47236 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47185 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47659 * 300.00329 * 3 2 1 28 28 H 1.09010 * 109.47097 * 60.00348 * 3 2 1 29 29 H 1.09005 * 109.46748 * 60.00506 * 4 2 1 30 30 H 1.08998 * 109.47289 * 300.00464 * 4 2 1 31 31 H 0.96999 * 120.00171 * 25.00566 * 7 5 4 32 32 H 0.96992 * 120.00478 * 180.02562 * 13 12 10 33 33 H 1.09005 * 109.46739 * 179.97438 * 18 5 4 34 34 H 1.08996 * 109.46990 * 299.99559 * 18 5 4 35 35 H 0.96705 * 114.00080 * 300.00151 * 21 19 18 36 36 H 1.09000 * 109.47424 * 299.99363 * 22 2 1 37 37 H 1.09000 * 109.47523 * 60.00004 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2495 6 1 3.9329 0.3071 1.2498 7 7 4.0583 -1.4118 2.4454 8 6 5.2801 -1.1257 2.9373 9 8 5.9777 -0.2938 2.3879 10 6 5.7683 -1.8167 4.1318 11 1 5.1989 -2.6308 4.5553 12 6 6.9738 -1.4221 4.7255 13 7 7.5955 -0.3560 4.2959 14 14 7.6930 -2.4198 6.1314 15 1 7.2713 -1.8266 7.4258 16 1 7.2045 -3.8195 6.0457 17 1 9.1752 -2.4064 6.0403 18 6 4.0805 -1.4415 0.0002 19 6 3.5705 -0.7202 -1.2489 20 1 3.9335 0.3076 -1.2487 21 8 4.0478 -1.3931 -2.4158 22 6 2.0400 -0.7211 -1.2493 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 1.6767 -1.7490 1.2491 30 1 1.6766 -0.2075 2.1392 31 1 3.5024 -2.0753 2.8831 32 1 8.4305 -0.0829 4.7067 33 1 5.1706 -1.4407 0.0003 34 1 3.7176 -2.4693 0.0000 35 1 5.0119 -1.4306 -2.4815 36 1 1.6767 -1.7488 -1.2493 37 1 1.6767 -0.2073 -2.1392 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693874957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:17 Heat of formation + Delta-G solvation = -144.939872 kcal Electronic energy + Delta-G solvation = -18176.247233 eV Core-core repulsion = 15337.022248 eV Total energy + Delta-G solvation = -2839.224985 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.07052 -38.99957 -37.22339 -35.34642 -34.46043 -32.11143 -30.24834 -28.23886 -28.06396 -27.34369 -23.43254 -22.56481 -21.27658 -19.80180 -18.96893 -18.05779 -17.43978 -16.70149 -16.13928 -15.73837 -15.65835 -15.25036 -15.05201 -14.54347 -14.34716 -14.06884 -13.92083 -13.15415 -12.99547 -12.85464 -12.81028 -12.63308 -12.59560 -12.43967 -12.12132 -12.03589 -11.99020 -11.56769 -11.46688 -11.10891 -10.91592 -10.82224 -9.82133 -9.44846 -8.32471 -6.85003 1.38601 1.40438 1.56203 2.23709 2.46594 3.03946 3.18186 3.59028 3.69359 3.87596 4.04870 4.07677 4.16688 4.26676 4.38392 4.46579 4.53338 4.66456 4.82398 4.84621 4.93830 5.03976 5.05243 5.11736 5.17291 5.22266 5.26656 5.31378 5.38443 5.46041 5.56308 5.89103 6.24615 6.32369 6.73682 6.86602 7.56667 8.49760 8.66775 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035863 B = 0.005850 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.569655 B = 4784.957168 C = 5087.353132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 C -0.150 4.150 4 C -0.106 4.106 5 C 0.156 3.844 6 H 0.046 0.954 7 N -0.752 5.752 8 C 0.542 3.458 9 O -0.632 6.632 10 C -0.578 4.578 11 H 0.086 0.914 12 C 0.031 3.969 13 N -0.824 5.824 14 Si 0.996 3.004 15 H -0.260 1.260 16 H -0.250 1.250 17 H -0.274 1.274 18 C -0.148 4.148 19 C 0.110 3.890 20 H 0.050 0.950 21 O -0.579 6.579 22 C -0.093 4.093 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.393 0.607 32 H 0.275 0.725 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.389 0.611 36 H 0.073 0.927 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.787 -1.615 -7.069 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.053 4.053 3 C -0.207 4.207 4 C -0.144 4.144 5 C 0.050 3.950 6 H 0.064 0.936 7 N -0.405 5.405 8 C 0.346 3.654 9 O -0.519 6.519 10 C -0.615 4.615 11 H 0.104 0.896 12 C -0.184 4.184 13 N -0.453 5.453 14 Si 0.816 3.184 15 H -0.184 1.184 16 H -0.174 1.174 17 H -0.199 1.199 18 C -0.188 4.188 19 C 0.051 3.949 20 H 0.068 0.932 21 O -0.387 6.387 22 C -0.130 4.130 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.226 0.774 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.238 0.762 36 H 0.091 0.909 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.800 -0.946 -7.573 14.903 hybrid contribution 1.337 -0.406 0.943 1.686 sum -11.463 -1.352 -6.630 13.312 Atomic orbital electron populations 1.21788 0.91762 1.02705 1.02726 1.20423 0.97107 0.94792 0.93008 1.22034 1.00374 0.95733 1.02578 1.21854 0.92087 1.01857 0.98644 1.20591 0.94510 0.95333 0.84542 0.93576 1.45907 1.18610 1.45598 1.30357 1.18546 0.80099 0.81891 0.84848 1.90529 1.58345 1.39113 1.63962 1.21445 1.08347 1.19566 1.12097 0.89622 1.26937 0.96260 0.95071 1.00142 1.70148 1.14724 1.22191 1.38279 0.85032 0.77400 0.79147 0.76865 1.18447 1.17377 1.19867 1.22559 0.99422 1.00616 0.96181 1.21826 0.96063 0.94040 0.83003 0.93178 1.86383 1.28068 1.80452 1.43770 1.21525 0.91480 1.01743 0.98242 0.91951 0.91212 0.91713 0.94332 0.90837 0.92377 0.90270 0.91344 0.77360 0.91552 0.95167 0.91388 0.76239 0.90851 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.47 71.98 0.61 -1.64 16 2 C -0.05 -1.20 0.77 -52.18 -0.04 -1.24 16 3 C -0.15 -3.66 7.78 71.98 0.56 -3.10 16 4 C -0.11 -2.96 4.20 30.59 0.13 -2.84 16 5 C 0.16 6.00 2.18 44.99 0.10 6.10 16 6 H 0.05 2.10 5.86 -2.39 -0.01 2.08 16 7 N -0.75 -34.04 5.07 -446.82 -2.27 -36.31 16 8 C 0.54 31.67 7.68 86.36 0.66 32.34 16 9 O -0.63 -42.46 14.77 -4.29 -0.06 -42.52 16 10 C -0.58 -33.09 9.53 24.83 0.24 -32.85 16 11 H 0.09 4.41 7.86 -2.91 -0.02 4.39 16 12 C 0.03 1.74 5.48 85.30 0.47 2.20 16 13 N -0.82 -50.81 11.91 21.84 0.26 -50.55 16 14 Si 1.00 41.27 29.56 68.60 2.03 43.30 16 15 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 16 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 18 C -0.15 -5.38 5.12 30.60 0.16 -5.23 16 19 C 0.11 3.27 3.19 30.61 0.10 3.37 16 20 H 0.05 1.57 6.43 -2.39 -0.02 1.55 16 21 O -0.58 -16.57 13.32 -148.98 -1.98 -18.55 16 22 C -0.09 -2.22 4.39 30.61 0.13 -2.08 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.04 1.14 4.81 -2.38 -0.01 1.13 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.39 15.42 8.58 -92.71 -0.80 14.62 16 32 H 0.27 15.32 8.29 -92.71 -0.77 14.55 16 33 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.39 9.05 9.08 -74.05 -0.67 8.38 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -75.69 295.22 0.69 -74.99 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.39 Total: 34.61 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 3.11 Total: -4.98 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -2.01 Total: -86.85 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -2.05 Total: -61.07 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -75.69 0.69 -74.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693874957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.946 kcal (2) G-P(sol) polarization free energy of solvation -75.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds