Wall clock time and date at job start Mon Mar 30 2020 03:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47100 * 2 1 4 4 C 1.53003 * 109.47184 * 240.00084 * 2 1 3 5 5 C 1.53000 * 109.47184 * 180.02562 * 4 2 1 6 6 H 1.09007 * 109.47243 * 300.00103 * 5 4 2 7 7 O 1.42895 * 109.47453 * 180.02562 * 5 4 2 8 8 C 1.53001 * 109.47309 * 60.00093 * 5 4 2 9 9 C 1.53003 * 109.46922 * 300.00067 * 8 5 4 10 10 H 1.09003 * 109.46901 * 179.97438 * 9 8 5 11 11 N 1.46504 * 109.47419 * 300.00102 * 9 8 5 12 12 C 1.34773 * 119.99776 * 193.86567 * 11 9 8 13 13 O 1.21683 * 120.00349 * 359.97438 * 12 11 9 14 14 C 1.46373 * 119.99647 * 179.97438 * 12 11 9 15 15 H 1.08008 * 119.99987 * 0.02562 * 14 12 11 16 16 C 1.40049 * 120.00273 * 180.02562 * 14 12 11 17 17 N 1.30677 * 119.99799 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00311 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47146 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.47003 * 299.99753 * 18 16 14 21 21 H 1.48501 * 109.47639 * 59.99596 * 18 16 14 22 22 C 1.53000 * 109.47184 * 59.99856 * 9 8 5 23 23 H 1.08997 * 109.47272 * 299.99598 * 1 2 3 24 24 H 1.08993 * 109.47179 * 59.99869 * 1 2 3 25 25 H 1.09007 * 109.46849 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47324 * 196.48845 * 3 2 1 27 27 H 1.08996 * 109.46934 * 316.49447 * 3 2 1 28 28 H 1.09006 * 109.46754 * 76.48971 * 3 2 1 29 29 H 1.08998 * 109.47038 * 299.99922 * 4 2 1 30 30 H 1.09003 * 109.46901 * 59.99990 * 4 2 1 31 31 H 0.96694 * 114.00932 * 179.97438 * 7 5 4 32 32 H 1.08992 * 109.46998 * 180.02562 * 8 5 4 33 33 H 1.08993 * 109.46760 * 59.99802 * 8 5 4 34 34 H 0.97004 * 119.99434 * 13.86064 * 11 9 8 35 35 H 0.96993 * 120.00223 * 180.02562 * 17 16 14 36 36 H 1.09007 * 109.47243 * 59.99896 * 22 9 8 37 37 H 1.08997 * 109.47272 * 179.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 1 3.9338 0.3058 -1.2487 7 8 4.0464 -1.3949 -2.4160 8 6 4.0795 -1.4435 0.0003 9 6 3.5695 -0.7222 1.2495 10 1 3.9321 -1.2366 2.1395 11 7 4.0583 0.6589 1.2499 12 6 3.9771 1.4021 2.3712 13 8 3.4974 0.9262 3.3832 14 6 4.4659 2.7818 2.3717 15 1 4.8913 3.2043 1.4734 16 6 4.3821 3.5540 3.5371 17 7 3.8669 3.0430 4.6239 18 14 5.0053 5.3150 3.5375 19 1 4.8045 5.9108 4.8829 20 1 6.4518 5.3282 3.2017 21 1 4.2557 6.1057 2.5285 22 6 2.0395 -0.7217 1.2492 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.0901 1.4566 -0.2917 27 1 1.4584 2.0335 -0.7074 28 1 1.9347 1.8650 0.9993 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1393 31 1 5.0103 -1.4331 -2.4822 32 1 5.1695 -1.4434 0.0007 33 1 3.7158 -2.4709 0.0000 34 1 4.4404 1.0383 0.4430 35 1 3.8085 3.5779 5.4308 36 1 1.6758 -1.7492 1.2489 37 1 1.6762 -0.2083 2.1394 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693874960.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:21 Heat of formation + Delta-G solvation = -95.744537 kcal Electronic energy + Delta-G solvation = -18811.925493 eV Core-core repulsion = 15974.833778 eV Total energy + Delta-G solvation = -2837.091715 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.05497 -36.89447 -35.82671 -33.40429 -32.33716 -30.65645 -29.05872 -26.63843 -26.10829 -25.97016 -22.08149 -20.96189 -19.73109 -17.77062 -17.57989 -16.72833 -15.42440 -15.24179 -14.88819 -14.10614 -14.00599 -13.55368 -13.43937 -13.14674 -12.45882 -12.35718 -12.01618 -11.95038 -11.63963 -11.52588 -11.18636 -11.14646 -10.94876 -10.78066 -10.58650 -10.35923 -10.24608 -10.18741 -10.05383 -9.74303 -9.40381 -8.82660 -7.56369 -7.30819 -6.17238 -4.62760 3.15137 3.20582 3.21904 4.10635 4.28071 4.59998 4.78497 4.96297 5.06936 5.30577 5.36002 5.42640 5.54029 5.70112 5.74524 5.87108 5.92391 6.02717 6.09629 6.17710 6.18713 6.29162 6.33000 6.39365 6.52137 6.62975 6.76762 6.78576 6.98011 7.15285 7.43681 7.73265 7.92355 8.12957 8.33836 9.03739 9.55290 10.61630 10.81523 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030372 B = 0.007344 C = 0.007053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.667382 B = 3811.748279 C = 3968.805835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.056 4.056 3 C -0.139 4.139 4 C -0.096 4.096 5 C 0.102 3.898 6 H 0.061 0.939 7 O -0.574 6.574 8 C -0.155 4.155 9 C 0.162 3.838 10 H 0.068 0.932 11 N -0.759 5.759 12 C 0.559 3.441 13 O -0.579 6.579 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.089 3.911 17 N -0.768 5.768 18 Si 0.904 3.096 19 H -0.281 1.281 20 H -0.269 1.269 21 H -0.268 1.268 22 C -0.120 4.120 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.374 0.626 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.378 0.622 35 H 0.268 0.732 36 H 0.053 0.947 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 -5.092 -10.503 11.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.056 4.056 3 C -0.196 4.196 4 C -0.133 4.133 5 C 0.043 3.957 6 H 0.079 0.921 7 O -0.379 6.379 8 C -0.193 4.193 9 C 0.056 3.944 10 H 0.086 0.914 11 N -0.417 5.417 12 C 0.363 3.637 13 O -0.462 6.462 14 C -0.583 4.583 15 H 0.082 0.918 16 C -0.131 4.131 17 N -0.397 5.397 18 Si 0.729 3.271 19 H -0.206 1.206 20 H -0.194 1.194 21 H -0.193 1.193 22 C -0.159 4.159 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.220 0.780 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.213 0.787 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.407 -5.488 -9.647 11.356 hybrid contribution 1.126 1.100 -0.226 1.590 sum -1.282 -4.388 -9.872 10.879 Atomic orbital electron populations 1.21839 0.95038 1.01024 1.01560 1.20425 0.94742 0.96475 0.93966 1.22299 1.00923 0.93860 1.02524 1.21496 0.92864 1.00830 0.98125 1.21931 0.95261 0.94851 0.83620 0.92077 1.86473 1.26367 1.80543 1.44524 1.22502 1.00783 1.00375 0.95676 1.20365 0.92907 0.85341 0.95777 0.91408 1.46586 1.68365 1.11946 1.14850 1.18076 0.78679 0.86095 0.80838 1.90595 1.49448 1.73486 1.32637 1.20844 1.43355 0.96380 0.97765 0.91752 1.25670 0.93288 0.99160 0.94939 1.70004 1.32877 1.36049 1.00741 0.86503 0.79866 0.82914 0.77862 1.20626 1.19393 1.19322 1.22020 0.96563 0.99220 0.98093 0.92416 0.93142 0.93237 0.91360 0.94993 0.91131 0.91860 0.91878 0.77953 0.91690 0.90810 0.78749 0.92150 0.92880 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.41 37.16 0.31 -1.64 16 2 C -0.06 -0.88 0.77 -154.51 -0.12 -1.00 16 3 C -0.14 -2.45 7.06 37.16 0.26 -2.19 16 4 C -0.10 -1.36 4.38 -26.73 -0.12 -1.48 16 5 C 0.10 1.41 3.12 -26.73 -0.08 1.32 16 6 H 0.06 0.87 5.15 -51.93 -0.27 0.60 16 7 O -0.57 -7.40 13.32 -35.23 -0.47 -7.86 16 8 C -0.16 -2.22 5.18 -26.73 -0.14 -2.36 16 9 C 0.16 2.99 2.74 -67.93 -0.19 2.80 16 10 H 0.07 1.41 7.93 -51.93 -0.41 1.00 16 11 N -0.76 -15.85 2.84 -55.21 -0.16 -16.01 16 12 C 0.56 15.05 6.10 -12.99 -0.08 14.97 16 13 O -0.58 -17.93 14.03 5.20 0.07 -17.85 16 14 C -0.55 -14.91 9.54 -35.63 -0.34 -15.25 16 15 H 0.06 1.62 7.85 -52.48 -0.41 1.20 16 16 C 0.09 2.44 5.50 -17.36 -0.10 2.35 16 17 N -0.77 -22.66 11.83 55.55 0.66 -22.00 16 18 Si 0.90 19.94 29.56 -169.99 -5.02 14.92 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 C -0.12 -2.15 4.32 -26.73 -0.12 -2.26 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.18 3.28 -51.93 -0.17 1.01 16 27 H 0.03 0.51 8.03 -51.93 -0.42 0.09 16 28 H 0.07 1.53 6.71 -51.93 -0.35 1.18 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.37 3.31 9.08 45.56 0.41 3.72 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.38 7.09 5.63 -40.82 -0.23 6.86 16 35 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.75 7.24 -51.93 -0.38 1.37 16 LS Contribution 284.34 15.07 4.28 4.28 Total: -1.00 -32.48 284.34 -6.07 -38.55 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -4.74 Total: 10.72 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.70 Total: -4.74 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.50 Total: -38.01 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.40 Total: -25.72 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.48 -6.07 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693874960.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.194 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds