Wall clock time and date at job start Mon Mar 30 2020 03:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47100 * 2 1 4 4 C 1.53003 * 109.47184 * 240.00084 * 2 1 3 5 5 C 1.53000 * 109.47184 * 180.02562 * 4 2 1 6 6 H 1.09007 * 109.47243 * 300.00103 * 5 4 2 7 7 O 1.42895 * 109.47453 * 180.02562 * 5 4 2 8 8 C 1.53001 * 109.47309 * 60.00093 * 5 4 2 9 9 C 1.53003 * 109.46922 * 300.00067 * 8 5 4 10 10 H 1.09003 * 109.46901 * 179.97438 * 9 8 5 11 11 N 1.46504 * 109.47419 * 300.00102 * 9 8 5 12 12 C 1.34773 * 119.99776 * 193.86567 * 11 9 8 13 13 O 1.21683 * 120.00349 * 359.97438 * 12 11 9 14 14 C 1.46373 * 119.99647 * 179.97438 * 12 11 9 15 15 H 1.08008 * 119.99987 * 0.02562 * 14 12 11 16 16 C 1.40049 * 120.00273 * 180.02562 * 14 12 11 17 17 N 1.30677 * 119.99799 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 120.00311 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47146 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.47003 * 299.99753 * 18 16 14 21 21 H 1.48501 * 109.47639 * 59.99596 * 18 16 14 22 22 C 1.53000 * 109.47184 * 59.99856 * 9 8 5 23 23 H 1.08997 * 109.47272 * 299.99598 * 1 2 3 24 24 H 1.08993 * 109.47179 * 59.99869 * 1 2 3 25 25 H 1.09007 * 109.46849 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47324 * 196.48845 * 3 2 1 27 27 H 1.08996 * 109.46934 * 316.49447 * 3 2 1 28 28 H 1.09006 * 109.46754 * 76.48971 * 3 2 1 29 29 H 1.08998 * 109.47038 * 299.99922 * 4 2 1 30 30 H 1.09003 * 109.46901 * 59.99990 * 4 2 1 31 31 H 0.96694 * 114.00932 * 179.97438 * 7 5 4 32 32 H 1.08992 * 109.46998 * 180.02562 * 8 5 4 33 33 H 1.08993 * 109.46760 * 59.99802 * 8 5 4 34 34 H 0.97004 * 119.99434 * 13.86064 * 11 9 8 35 35 H 0.96993 * 120.00223 * 180.02562 * 17 16 14 36 36 H 1.09007 * 109.47243 * 59.99896 * 22 9 8 37 37 H 1.08997 * 109.47272 * 179.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 1 3.9338 0.3058 -1.2487 7 8 4.0464 -1.3949 -2.4160 8 6 4.0795 -1.4435 0.0003 9 6 3.5695 -0.7222 1.2495 10 1 3.9321 -1.2366 2.1395 11 7 4.0583 0.6589 1.2499 12 6 3.9771 1.4021 2.3712 13 8 3.4974 0.9262 3.3832 14 6 4.4659 2.7818 2.3717 15 1 4.8913 3.2043 1.4734 16 6 4.3821 3.5540 3.5371 17 7 3.8669 3.0430 4.6239 18 14 5.0053 5.3150 3.5375 19 1 4.8045 5.9108 4.8829 20 1 6.4518 5.3282 3.2017 21 1 4.2557 6.1057 2.5285 22 6 2.0395 -0.7217 1.2492 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 3.0901 1.4566 -0.2917 27 1 1.4584 2.0335 -0.7074 28 1 1.9347 1.8650 0.9993 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1393 31 1 5.0103 -1.4331 -2.4822 32 1 5.1695 -1.4434 0.0007 33 1 3.7158 -2.4709 0.0000 34 1 4.4404 1.0383 0.4430 35 1 3.8085 3.5779 5.4308 36 1 1.6758 -1.7492 1.2489 37 1 1.6762 -0.2083 2.1394 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693874960.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:20 Heat of formation + Delta-G solvation = -120.144374 kcal Electronic energy + Delta-G solvation = -18812.983549 eV Core-core repulsion = 15974.833778 eV Total energy + Delta-G solvation = -2838.149771 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.47097 -38.67346 -37.07493 -35.08962 -34.38022 -32.19412 -30.43739 -28.23035 -27.80443 -27.35177 -23.50744 -22.44525 -21.38574 -19.37688 -19.19584 -17.99334 -17.36344 -16.65676 -16.38716 -15.83986 -15.27413 -14.94675 -14.91657 -14.68567 -14.12389 -13.83955 -13.56459 -13.44695 -12.96899 -12.89675 -12.77580 -12.67468 -12.59920 -12.42383 -12.16147 -12.00050 -11.92548 -11.50294 -11.39620 -11.03715 -10.86796 -10.60109 -9.73940 -9.15611 -8.24166 -6.79048 1.39506 1.42524 1.53345 2.25320 2.53791 3.14506 3.24765 3.64789 3.76314 3.84097 4.07049 4.11499 4.15348 4.30455 4.47161 4.49092 4.73587 4.77017 4.82553 4.88051 4.98664 5.02536 5.06807 5.09407 5.16772 5.30023 5.33071 5.35390 5.45729 5.54036 5.67780 5.93563 6.29227 6.38488 6.91922 6.92394 7.63154 8.57281 8.75681 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.030372 B = 0.007344 C = 0.007053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.667382 B = 3811.748279 C = 3968.805835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 C -0.133 4.133 4 C -0.090 4.090 5 C 0.109 3.891 6 H 0.057 0.943 7 O -0.576 6.576 8 C -0.142 4.142 9 C 0.158 3.842 10 H 0.036 0.964 11 N -0.742 5.742 12 C 0.550 3.450 13 O -0.629 6.629 14 C -0.572 4.572 15 H 0.083 0.917 16 C 0.031 3.969 17 N -0.823 5.823 18 Si 0.989 3.011 19 H -0.277 1.277 20 H -0.255 1.255 21 H -0.256 1.256 22 C -0.116 4.116 23 H 0.036 0.964 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.020 0.980 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.393 0.607 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.391 0.609 35 H 0.271 0.729 36 H 0.075 0.925 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 -4.944 -13.291 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.052 4.052 3 C -0.190 4.190 4 C -0.128 4.128 5 C 0.050 3.950 6 H 0.075 0.925 7 O -0.384 6.384 8 C -0.180 4.180 9 C 0.052 3.948 10 H 0.055 0.945 11 N -0.399 5.399 12 C 0.354 3.646 13 O -0.516 6.516 14 C -0.609 4.609 15 H 0.101 0.899 16 C -0.184 4.184 17 N -0.452 5.452 18 Si 0.809 3.191 19 H -0.202 1.202 20 H -0.179 1.179 21 H -0.180 1.180 22 C -0.155 4.155 23 H 0.055 0.945 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.243 0.757 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.228 0.772 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -1.770 -5.365 -12.503 13.720 hybrid contribution 0.932 0.970 0.611 1.477 sum -0.837 -4.395 -11.892 12.706 Atomic orbital electron populations 1.21821 0.93722 1.02224 1.01488 1.20375 0.95889 0.95040 0.93862 1.22197 1.01585 0.95366 0.99854 1.21422 0.93171 1.01218 0.96976 1.21741 0.95059 0.94575 0.83606 0.92499 1.86441 1.28384 1.80191 1.43408 1.22406 1.01596 1.00507 0.93486 1.20499 0.93412 0.83832 0.97031 0.94533 1.46205 1.67308 1.12698 1.13685 1.18324 0.78079 0.86777 0.81440 1.90554 1.51534 1.74582 1.34969 1.21369 1.43677 0.97031 0.98827 0.89909 1.26867 0.92875 1.04539 0.94124 1.70186 1.34734 1.38507 1.01813 0.85198 0.79720 0.75967 0.78207 1.20214 1.17912 1.17985 1.21930 0.96131 1.00146 0.97259 0.94459 0.91245 0.91443 0.91180 0.93170 0.96116 0.90713 0.90699 0.75733 0.90331 0.89182 0.77203 0.91878 0.90671 0.95279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 8.41 71.98 0.61 -3.06 16 2 C -0.05 -1.57 0.77 -52.18 -0.04 -1.61 16 3 C -0.13 -4.66 7.06 71.98 0.51 -4.16 16 4 C -0.09 -2.27 4.38 30.60 0.13 -2.14 16 5 C 0.11 2.66 3.12 30.59 0.10 2.75 16 6 H 0.06 1.45 5.15 -2.38 -0.01 1.44 16 7 O -0.58 -12.40 13.32 -148.98 -1.98 -14.39 16 8 C -0.14 -3.73 5.18 30.60 0.16 -3.57 16 9 C 0.16 5.87 2.74 44.99 0.12 6.00 16 10 H 0.04 1.58 7.93 -2.39 -0.02 1.57 16 11 N -0.74 -31.57 2.84 -446.82 -1.27 -32.84 16 12 C 0.55 30.86 6.10 86.36 0.53 31.39 16 13 O -0.63 -41.41 14.03 -4.29 -0.06 -41.47 16 14 C -0.57 -31.87 9.54 24.83 0.24 -31.64 16 15 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 16 C 0.03 1.71 5.50 85.30 0.47 2.18 16 17 N -0.82 -50.52 11.83 21.84 0.26 -50.27 16 18 Si 0.99 41.11 29.56 68.60 2.03 43.14 16 19 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 22 C -0.12 -4.22 4.32 30.59 0.13 -4.08 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 26 H 0.07 2.37 3.28 -2.39 -0.01 2.36 16 27 H 0.05 1.54 8.03 -2.39 -0.02 1.52 16 28 H 0.02 0.91 6.71 -2.38 -0.02 0.89 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 31 H 0.39 5.26 9.08 -74.06 -0.67 4.59 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.39 14.50 5.63 -92.71 -0.52 13.98 16 35 H 0.27 15.25 8.29 -92.71 -0.77 14.48 16 36 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.03 1.34 7.24 -2.39 -0.02 1.32 16 Total: -1.00 -74.32 284.34 1.81 -72.51 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -0.11 Total: 31.25 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 2.95 Total: -7.93 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -1.01 Total: -83.11 kcal Atomic # 8 Polarization: -53.82 SS G_CDS: -2.04 Total: -55.86 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -74.32 1.81 -72.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693874960.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.630 kcal (2) G-P(sol) polarization free energy of solvation -74.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds