Wall clock time and date at job start Mon Mar 30 2020 04:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 C 1.53004 * 109.47030 * 119.99987 * 2 1 3 5 5 C 1.50704 * 109.46760 * 301.88587 * 4 2 1 6 6 O 1.20823 * 120.00420 * 0.02562 * 5 4 2 7 7 O 1.34235 * 119.99765 * 180.02562 * 5 4 2 8 8 N 1.46900 * 109.47185 * 239.99292 * 2 1 3 9 9 C 1.46904 * 110.99406 * 64.24535 * 8 2 1 10 10 C 1.50704 * 109.46978 * 195.75869 * 9 8 2 11 11 H 1.08004 * 120.00063 * 5.26148 * 10 9 8 12 12 C 1.37877 * 119.99951 * 185.26350 * 10 9 8 13 13 N 1.31510 * 120.00129 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99948 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47051 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46901 * 120.00046 * 14 12 10 17 17 H 1.48494 * 109.47212 * 240.00295 * 14 12 10 18 18 C 1.46893 * 111.00266 * 188.19888 * 8 2 1 19 19 C 1.52999 * 117.50051 * 143.92009 * 18 8 2 20 20 C 1.53004 * 117.50029 * 75.29473 * 18 8 2 21 21 H 1.08999 * 109.46821 * 299.99955 * 1 2 3 22 22 H 1.08992 * 109.47281 * 60.00211 * 1 2 3 23 23 H 1.09000 * 109.46821 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46799 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46548 * 299.99819 * 3 2 1 26 26 H 1.08995 * 109.46984 * 59.99532 * 3 2 1 27 27 H 1.08997 * 109.47360 * 181.89032 * 4 2 1 28 28 H 1.09002 * 109.47398 * 61.88553 * 4 2 1 29 29 H 0.96697 * 116.99532 * 180.02562 * 7 5 4 30 30 H 1.08994 * 109.47735 * 315.75893 * 9 8 2 31 31 H 1.08999 * 109.47225 * 75.76291 * 9 8 2 32 32 H 0.96998 * 120.00114 * 180.02562 * 13 12 10 33 33 H 1.09005 * 115.54853 * 289.62928 * 18 8 2 34 34 H 1.08998 * 117.50061 * 359.97438 * 19 18 8 35 35 H 1.09000 * 117.50021 * 145.02466 * 19 18 8 36 36 H 1.09002 * 117.50181 * 214.98123 * 20 18 8 37 37 H 1.08996 * 117.49143 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.4998 -0.0383 2.4793 6 8 0.7804 0.9260 2.3681 7 8 1.8180 -0.5013 3.6984 8 7 2.0197 -0.6926 -1.1993 9 6 1.6333 0.0296 -2.4188 10 6 1.7998 -0.8752 -3.6125 11 1 2.0749 -1.9101 -3.4715 12 6 1.6009 -0.3819 -4.8845 13 7 1.2664 0.8783 -5.0563 14 14 1.8079 -1.5032 -6.3642 15 1 2.1850 -2.8642 -5.9049 16 1 0.5293 -1.5716 -7.1161 17 1 2.8736 -0.9655 -7.2475 18 6 3.4749 -0.8840 -1.1396 19 6 4.0418 -2.1791 -1.7244 20 6 4.0063 -1.9755 -0.2084 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1295 -0.6920 1.2664 28 1 1.7046 -1.7583 1.2326 29 1 1.4472 -0.0305 4.4573 30 1 0.5918 0.3415 -2.3419 31 1 2.2678 0.9079 -2.5375 32 1 1.1262 1.2253 -5.9511 33 1 4.0729 0.0211 -1.2467 34 1 3.3350 -2.8894 -2.1532 35 1 5.0129 -2.1263 -2.2167 36 1 4.9540 -1.7888 0.2967 37 1 3.2761 -2.5513 0.3601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694023528.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:13 Heat of formation + Delta-G solvation = -52.608819 kcal Electronic energy + Delta-G solvation = -18528.468597 eV Core-core repulsion = 15693.247387 eV Total energy + Delta-G solvation = -2835.221210 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.53019 -38.51700 -36.20903 -34.75250 -32.99568 -30.89011 -28.06785 -26.87992 -26.29347 -22.87610 -21.99471 -21.29124 -20.52238 -18.22426 -17.77750 -16.46890 -16.31859 -15.84405 -15.09093 -14.47137 -14.41720 -13.89281 -13.62218 -13.19274 -12.67440 -12.36633 -12.15892 -11.96945 -11.77076 -11.41665 -11.28467 -10.94796 -10.82484 -10.72502 -10.57347 -10.42962 -10.24037 -10.13870 -9.82275 -9.53210 -9.16314 -9.07108 -8.35821 -7.26832 -5.97189 -3.96829 2.32908 3.14512 3.33208 3.40889 3.45239 4.44662 4.45206 4.74059 5.03104 5.25007 5.37714 5.44419 5.55230 5.62997 5.75257 5.86335 5.90064 5.99044 6.08564 6.23454 6.35935 6.40412 6.45027 6.51262 6.59183 6.72992 6.81651 6.84980 6.93821 7.31983 7.43765 7.87573 8.01694 8.15677 8.23193 8.59633 9.11353 9.66434 11.13666 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033792 B = 0.007027 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.407137 B = 3983.503356 C = 4490.897727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.125 3.875 3 C -0.186 4.186 4 C -0.106 4.106 5 C 0.477 3.523 6 O -0.506 6.506 7 O -0.522 6.522 8 N -0.499 5.499 9 C 0.194 3.806 10 C -0.497 4.497 11 H 0.066 0.934 12 C 0.053 3.947 13 N -0.901 5.901 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.286 1.286 18 C 0.031 3.969 19 C -0.148 4.148 20 C -0.199 4.199 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.404 0.596 30 H 0.034 0.966 31 H -0.001 1.001 32 H 0.259 0.741 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.147 -3.096 13.881 14.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.035 3.965 3 C -0.245 4.245 4 C -0.144 4.144 5 C 0.320 3.680 6 O -0.394 6.394 7 O -0.334 6.334 8 N -0.224 5.224 9 C 0.070 3.930 10 C -0.536 4.536 11 H 0.084 0.916 12 C -0.148 4.148 13 N -0.542 5.542 14 Si 0.722 3.278 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.213 1.213 18 C -0.078 4.078 19 C -0.185 4.185 20 C -0.236 4.236 21 H 0.093 0.907 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.262 0.738 30 H 0.052 0.948 31 H 0.017 0.983 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.841 -3.379 13.332 14.043 hybrid contribution 0.281 0.667 -0.500 0.879 sum 3.122 -2.712 12.832 13.482 Atomic orbital electron populations 1.22154 0.93576 1.01938 1.03170 1.20681 0.95779 0.91218 0.88851 1.22643 1.00227 0.98117 1.03504 1.21848 1.03156 1.01062 0.88340 1.23831 0.77474 0.82114 0.84607 1.90613 1.35138 1.27004 1.86661 1.84578 1.71496 1.60269 1.17071 1.62233 1.08285 1.49749 1.02127 1.19795 0.96035 0.92586 0.84593 1.21245 1.45412 0.97049 0.89847 0.91611 1.24972 0.95792 0.95028 0.98973 1.69966 1.48596 1.13552 1.22051 0.86499 0.77541 0.80935 0.82782 1.19703 1.21199 1.21277 1.22092 0.90135 0.92196 1.03425 1.22863 1.01368 1.00539 0.93768 1.23253 1.01742 1.04490 0.94147 0.90708 0.91700 0.92905 0.93666 0.91552 0.91216 0.87060 0.87347 0.73836 0.94786 0.98277 0.93139 0.90883 0.88108 0.89852 0.89779 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.08 37.16 0.30 -2.44 16 2 C 0.12 2.21 0.45 -131.60 -0.06 2.15 16 3 C -0.19 -3.37 7.57 37.16 0.28 -3.09 16 4 C -0.11 -1.51 3.46 -27.88 -0.10 -1.61 16 5 C 0.48 6.42 7.74 36.01 0.28 6.70 16 6 O -0.51 -8.03 12.11 -18.75 -0.23 -8.26 16 7 O -0.52 -5.40 13.42 -39.27 -0.53 -5.93 16 8 N -0.50 -10.22 4.40 -212.51 -0.94 -11.16 16 9 C 0.19 4.91 3.54 -4.97 -0.02 4.89 16 10 C -0.50 -13.62 8.60 -34.44 -0.30 -13.91 16 11 H 0.07 1.78 6.27 -52.48 -0.33 1.45 16 12 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 13 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 14 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 C 0.03 0.57 3.57 -67.71 -0.24 0.33 16 19 C -0.15 -2.57 9.55 -26.73 -0.26 -2.83 16 20 C -0.20 -2.89 7.75 -26.73 -0.21 -3.10 16 21 H 0.07 1.30 5.36 -51.93 -0.28 1.02 16 22 H 0.06 1.31 6.22 -51.93 -0.32 0.98 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.04 0.78 6.98 -51.93 -0.36 0.41 16 25 H 0.07 1.35 6.71 -51.93 -0.35 1.00 16 26 H 0.07 1.22 5.68 -51.93 -0.30 0.92 16 27 H 0.11 1.49 5.52 -51.93 -0.29 1.20 16 28 H 0.11 1.46 7.26 -51.93 -0.38 1.08 16 29 H 0.40 2.40 9.10 45.56 0.41 2.82 16 30 H 0.03 0.92 5.84 -51.93 -0.30 0.62 16 31 H 0.00 -0.02 7.13 -51.93 -0.37 -0.39 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.07 1.41 7.39 -51.93 -0.38 1.03 16 34 H 0.10 1.91 7.18 -51.93 -0.37 1.54 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.10 1.32 6.40 -51.93 -0.33 0.99 16 LS Contribution 285.63 15.07 4.30 4.30 Total: -1.00 -30.86 285.63 -6.43 -37.29 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.35 Total: 4.66 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -0.41 Total: -11.52 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: -0.20 Total: -37.15 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.75 Total: -14.18 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.86 -6.43 -37.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694023528.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.319 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds