Wall clock time and date at job start Mon Mar 30 2020 04:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47258 * 2 1 4 4 C 1.53004 * 109.47030 * 119.99987 * 2 1 3 5 5 C 1.50704 * 109.46760 * 301.88587 * 4 2 1 6 6 O 1.20823 * 120.00420 * 0.02562 * 5 4 2 7 7 O 1.34235 * 119.99765 * 180.02562 * 5 4 2 8 8 N 1.46900 * 109.47185 * 239.99292 * 2 1 3 9 9 C 1.46904 * 110.99406 * 64.24535 * 8 2 1 10 10 C 1.50704 * 109.46978 * 195.75869 * 9 8 2 11 11 H 1.08004 * 120.00063 * 5.26148 * 10 9 8 12 12 C 1.37877 * 119.99951 * 185.26350 * 10 9 8 13 13 N 1.31510 * 120.00129 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99948 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47051 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.46901 * 120.00046 * 14 12 10 17 17 H 1.48494 * 109.47212 * 240.00295 * 14 12 10 18 18 C 1.46893 * 111.00266 * 188.19888 * 8 2 1 19 19 C 1.52999 * 117.50051 * 143.92009 * 18 8 2 20 20 C 1.53004 * 117.50029 * 75.29473 * 18 8 2 21 21 H 1.08999 * 109.46821 * 299.99955 * 1 2 3 22 22 H 1.08992 * 109.47281 * 60.00211 * 1 2 3 23 23 H 1.09000 * 109.46821 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46799 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46548 * 299.99819 * 3 2 1 26 26 H 1.08995 * 109.46984 * 59.99532 * 3 2 1 27 27 H 1.08997 * 109.47360 * 181.89032 * 4 2 1 28 28 H 1.09002 * 109.47398 * 61.88553 * 4 2 1 29 29 H 0.96697 * 116.99532 * 180.02562 * 7 5 4 30 30 H 1.08994 * 109.47735 * 315.75893 * 9 8 2 31 31 H 1.08999 * 109.47225 * 75.76291 * 9 8 2 32 32 H 0.96998 * 120.00114 * 180.02562 * 13 12 10 33 33 H 1.09005 * 115.54853 * 289.62928 * 18 8 2 34 34 H 1.08998 * 117.50061 * 359.97438 * 19 18 8 35 35 H 1.09000 * 117.50021 * 145.02466 * 19 18 8 36 36 H 1.09002 * 117.50181 * 214.98123 * 20 18 8 37 37 H 1.08996 * 117.49143 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.4998 -0.0383 2.4793 6 8 0.7804 0.9260 2.3681 7 8 1.8180 -0.5013 3.6984 8 7 2.0197 -0.6926 -1.1993 9 6 1.6333 0.0296 -2.4188 10 6 1.7998 -0.8752 -3.6125 11 1 2.0749 -1.9101 -3.4715 12 6 1.6009 -0.3819 -4.8845 13 7 1.2664 0.8783 -5.0563 14 14 1.8079 -1.5032 -6.3642 15 1 2.1850 -2.8642 -5.9049 16 1 0.5293 -1.5716 -7.1161 17 1 2.8736 -0.9655 -7.2475 18 6 3.4749 -0.8840 -1.1396 19 6 4.0418 -2.1791 -1.7244 20 6 4.0063 -1.9755 -0.2084 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1295 -0.6920 1.2664 28 1 1.7046 -1.7583 1.2326 29 1 1.4472 -0.0305 4.4573 30 1 0.5918 0.3415 -2.3419 31 1 2.2678 0.9079 -2.5375 32 1 1.1262 1.2253 -5.9511 33 1 4.0729 0.0211 -1.2467 34 1 3.3350 -2.8894 -2.1532 35 1 5.0129 -2.1263 -2.2167 36 1 4.9540 -1.7888 0.2967 37 1 3.2761 -2.5513 0.3601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694023528.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:13 Heat of formation + Delta-G solvation = -74.397613 kcal Electronic energy + Delta-G solvation = -18529.413430 eV Core-core repulsion = 15693.247387 eV Total energy + Delta-G solvation = -2836.166043 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.68766 -39.87514 -37.23707 -36.09637 -35.02319 -32.57293 -29.40497 -28.55345 -28.09288 -24.57001 -23.39666 -22.61357 -21.87869 -19.58542 -18.92929 -18.47083 -17.46352 -16.91953 -16.78642 -16.23339 -15.91322 -15.35976 -15.07376 -14.58984 -14.14751 -14.05908 -13.66678 -13.52831 -13.10746 -12.87250 -12.78797 -12.74707 -12.45485 -12.23269 -12.04753 -11.97016 -11.88896 -11.64149 -11.24051 -11.15378 -10.85501 -10.60247 -10.47796 -8.96957 -8.13383 -6.20936 1.28996 1.41388 1.42278 1.55243 2.14842 2.44713 3.08972 3.19727 3.25501 3.71491 3.95726 4.17330 4.23998 4.33594 4.53338 4.56568 4.62148 4.64284 4.75228 4.88993 4.94552 4.99957 5.01997 5.11436 5.17610 5.30793 5.31716 5.40337 5.46012 5.52582 5.75417 5.81044 6.15581 6.47442 6.70975 6.97189 7.12108 7.47649 8.97681 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033792 B = 0.007027 C = 0.006233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.407137 B = 3983.503356 C = 4490.897727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.120 3.880 3 C -0.176 4.176 4 C -0.100 4.100 5 C 0.488 3.512 6 O -0.536 6.536 7 O -0.509 6.509 8 N -0.499 5.499 9 C 0.213 3.787 10 C -0.504 4.504 11 H 0.069 0.931 12 C -0.003 4.003 13 N -0.941 5.941 14 Si 0.963 3.037 15 H -0.260 1.260 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.003 4.003 19 C -0.162 4.162 20 C -0.150 4.150 21 H 0.085 0.915 22 H 0.031 0.969 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.029 0.971 26 H 0.078 0.922 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.426 0.574 30 H 0.006 0.994 31 H -0.036 1.036 32 H 0.260 0.740 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.383 -5.153 15.671 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 C -0.235 4.235 4 C -0.138 4.138 5 C 0.332 3.668 6 O -0.427 6.427 7 O -0.323 6.323 8 N -0.223 5.223 9 C 0.087 3.913 10 C -0.543 4.543 11 H 0.087 0.913 12 C -0.200 4.200 13 N -0.583 5.583 14 Si 0.789 3.211 15 H -0.184 1.184 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.112 4.112 19 C -0.200 4.200 20 C -0.187 4.187 21 H 0.103 0.897 22 H 0.050 0.950 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.097 0.903 27 H 0.145 0.855 28 H 0.142 0.858 29 H 0.288 0.712 30 H 0.024 0.976 31 H -0.018 1.018 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.089 -5.459 15.172 16.635 hybrid contribution -0.097 1.323 -0.955 1.635 sum 3.992 -4.135 14.217 15.335 Atomic orbital electron populations 1.22101 0.94278 1.01869 1.01979 1.20753 0.95337 0.91210 0.89676 1.22539 1.00499 0.98411 1.02014 1.21679 1.03938 1.01244 0.86891 1.23471 0.76716 0.81322 0.85330 1.90615 1.36570 1.28319 1.87199 1.84500 1.71028 1.60004 1.16734 1.62101 1.10117 1.48783 1.01253 1.19350 0.93686 0.91431 0.86811 1.21581 1.44620 0.97330 0.90766 0.91320 1.25871 0.95535 0.96413 1.02176 1.70111 1.49896 1.15524 1.22726 0.85417 0.77461 0.79344 0.78908 1.18412 1.20925 1.20863 1.22141 0.88558 0.92743 1.07789 1.22886 1.01271 0.99185 0.96616 1.23363 1.02828 1.00068 0.92407 0.89693 0.94997 0.92346 0.92968 0.95211 0.90345 0.85532 0.85779 0.71213 0.97604 1.01814 0.93111 0.92237 0.89976 0.88908 0.86389 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 8.08 71.98 0.58 -4.77 16 2 C 0.12 4.22 0.45 3.53 0.00 4.22 16 3 C -0.18 -6.52 7.57 71.98 0.54 -5.97 16 4 C -0.10 -2.56 3.46 29.85 0.10 -2.45 16 5 C 0.49 11.68 7.74 71.24 0.55 12.23 16 6 O -0.54 -16.05 12.11 21.97 0.27 -15.78 16 7 O -0.51 -8.41 13.42 -51.47 -0.69 -9.10 16 8 N -0.50 -20.58 4.40 -826.24 -3.64 -24.22 16 9 C 0.21 11.30 3.54 85.56 0.30 11.61 16 10 C -0.50 -28.35 8.60 25.60 0.22 -28.13 16 11 H 0.07 3.75 6.27 -2.91 -0.02 3.73 16 12 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 13 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 14 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 15 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 18 C 0.00 -0.12 3.57 44.92 0.16 0.04 16 19 C -0.16 -5.35 9.55 30.60 0.29 -5.06 16 20 C -0.15 -3.77 7.75 30.60 0.24 -3.54 16 21 H 0.08 2.96 5.36 -2.39 -0.01 2.94 16 22 H 0.03 1.35 6.22 -2.39 -0.01 1.34 16 23 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.05 1.81 6.98 -2.39 -0.02 1.79 16 25 H 0.03 1.28 6.71 -2.39 -0.02 1.26 16 26 H 0.08 2.75 5.68 -2.39 -0.01 2.73 16 27 H 0.13 2.86 5.52 -2.39 -0.01 2.85 16 28 H 0.12 2.84 7.26 -2.39 -0.02 2.83 16 29 H 0.43 3.33 9.10 -74.06 -0.67 2.66 16 30 H 0.01 0.35 5.84 -2.39 -0.01 0.33 16 31 H -0.04 -2.12 7.13 -2.39 -0.02 -2.14 16 32 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.06 2.31 7.39 -2.38 -0.02 2.29 16 34 H 0.08 3.02 7.18 -2.39 -0.02 3.01 16 35 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.11 2.52 6.40 -2.39 -0.02 2.50 16 Total: -1.00 -69.14 285.63 2.12 -67.02 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.41 Total: 14.24 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 3.46 Total: -21.54 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -3.35 Total: -81.73 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.42 Total: -24.88 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -69.14 2.12 -67.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694023528.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.378 kcal (2) G-P(sol) polarization free energy of solvation -69.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds