Wall clock time and date at job start Mon Mar 30 2020 03:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00033 * 2 1 4 4 H 1.48504 * 109.47435 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47265 * 300.00218 * 3 2 1 6 6 H 1.48499 * 109.47077 * 60.00201 * 3 2 1 7 7 C 1.37873 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00452 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99966 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47375 * 174.74396 * 9 7 2 11 11 C 1.46900 * 111.00051 * 295.28078 * 10 9 7 12 12 C 1.53007 * 117.49881 * 145.50444 * 11 10 9 13 13 C 1.53007 * 60.00085 * 252.50907 * 12 11 10 14 14 C 1.46898 * 111.00191 * 171.32487 * 10 9 7 15 15 H 1.09000 * 109.57388 * 160.18094 * 14 10 9 16 16 C 1.53093 * 109.52079 * 40.02986 * 14 10 9 17 17 O 1.42903 * 109.41627 * 182.48197 * 16 14 10 18 18 C 1.42909 * 114.09510 * 61.15834 * 17 16 14 19 19 C 1.53085 * 109.41458 * 298.84373 * 18 17 16 20 20 C 1.53176 * 109.52288 * 280.34542 * 14 10 9 21 21 H 1.09002 * 109.61334 * 296.79145 * 20 14 10 22 22 O 1.42893 * 109.54351 * 57.01825 * 20 14 10 23 23 H 0.97000 * 120.00440 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46620 * 54.74518 * 9 7 2 25 25 H 1.08994 * 109.47111 * 294.74964 * 9 7 2 26 26 H 1.08995 * 115.55474 * 291.21282 * 11 10 9 27 27 H 1.09004 * 117.49848 * 359.97438 * 12 11 10 28 28 H 1.08995 * 117.49906 * 145.02620 * 12 11 10 29 29 H 1.08993 * 117.49868 * 252.51278 * 13 12 11 30 30 H 1.09002 * 117.49714 * 107.48225 * 13 12 11 31 31 H 1.09008 * 109.47948 * 62.50530 * 16 14 10 32 32 H 1.08997 * 109.48390 * 302.46990 * 16 14 10 33 33 H 1.08992 * 109.47999 * 178.86049 * 18 17 16 34 34 H 1.09002 * 109.47463 * 58.82544 * 18 17 16 35 35 H 1.09007 * 109.52248 * 297.70091 * 19 18 17 36 36 H 1.08999 * 109.52508 * 177.51169 * 19 18 17 37 37 H 0.96706 * 113.99839 * 179.55287 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2005 -3.6127 -0.1280 11 6 2.8864 -3.5738 -1.4265 12 6 4.3438 -4.0377 -1.4699 13 6 4.0102 -2.5502 -1.6015 14 6 1.5285 -4.9033 0.0739 15 1 2.1328 -5.7011 -0.3579 16 6 0.1561 -4.8770 -0.6041 17 8 -0.5193 -6.1120 -0.3575 18 6 -0.7618 -6.3783 1.0255 19 6 0.5736 -6.4648 1.7689 20 6 1.3438 -5.1552 1.5734 21 1 2.3189 -5.2303 2.0547 22 8 0.6069 -4.0764 2.1521 23 1 -0.4851 0.8400 0.0004 24 1 0.5553 -2.5170 -0.8395 25 1 0.6972 -2.5989 0.9329 26 1 2.2631 -3.7900 -2.2941 27 1 4.7938 -4.3714 -0.5348 28 1 4.6794 -4.5593 -2.3661 29 1 4.1263 -2.0935 -2.5842 30 1 4.2405 -1.9058 -0.7530 31 1 0.2838 -4.7408 -1.6781 32 1 -0.4330 -4.0536 -0.2005 33 1 -1.2954 -7.3234 1.1255 34 1 -1.3630 -5.5744 1.4504 35 1 1.1587 -7.2943 1.3714 36 1 0.3895 -6.6239 2.8313 37 1 0.4468 -4.1737 3.1009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704200256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:32 Heat of formation + Delta-G solvation = -51.557370 kcal Electronic energy + Delta-G solvation = -18800.208819 eV Core-core repulsion = 15965.033203 eV Total energy + Delta-G solvation = -2835.175616 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.66883 -37.18209 -35.86973 -33.63432 -32.40907 -31.29719 -28.84850 -26.31565 -24.46344 -22.96493 -22.30228 -21.59462 -19.93731 -18.85454 -16.88815 -16.56105 -15.95521 -15.51660 -14.93914 -14.73121 -14.60034 -14.13643 -13.73277 -13.27939 -12.71327 -12.56391 -12.11327 -11.91181 -11.53727 -11.40181 -11.25075 -10.92292 -10.84563 -10.58962 -10.45717 -10.07230 -9.96750 -9.63357 -9.52445 -9.13235 -9.04551 -8.73142 -8.24314 -7.14673 -5.90029 -3.87826 3.35556 3.43142 3.46658 4.14832 4.49717 4.60311 4.65816 4.73346 5.06531 5.20595 5.26985 5.37761 5.46537 5.57663 5.67913 5.72389 5.79019 5.88031 5.97093 6.09494 6.11785 6.18188 6.20325 6.31045 6.47653 6.58559 6.71097 6.95631 7.43190 7.50541 7.63620 7.96417 8.09326 8.30128 8.43552 8.69181 9.19816 9.73315 11.21086 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024589 B = 0.008695 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.449841 B = 3219.312552 C = 3827.633666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.053 3.947 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.501 4.501 8 H 0.070 0.930 9 C 0.183 3.817 10 N -0.495 5.495 11 C 0.025 3.975 12 C -0.191 4.191 13 C -0.147 4.147 14 C 0.066 3.934 15 H 0.081 0.919 16 C 0.033 3.967 17 O -0.391 6.391 18 C 0.065 3.935 19 C -0.188 4.188 20 C 0.115 3.885 21 H 0.058 0.942 22 O -0.534 6.534 23 H 0.257 0.743 24 H -0.010 1.010 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 -11.647 2.113 12.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.539 4.539 8 H 0.088 0.912 9 C 0.059 3.941 10 N -0.220 5.220 11 C -0.084 4.084 12 C -0.228 4.228 13 C -0.184 4.184 14 C -0.043 4.043 15 H 0.099 0.901 16 C -0.044 4.044 17 O -0.309 6.309 18 C -0.012 4.012 19 C -0.226 4.226 20 C 0.055 3.945 21 H 0.076 0.924 22 O -0.339 6.339 23 H 0.067 0.933 24 H 0.008 0.992 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.130 0.870 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 2.574 -11.370 1.709 11.783 hybrid contribution -0.150 0.824 0.096 0.843 sum 2.424 -10.546 1.805 10.971 Atomic orbital electron populations 1.69976 1.05910 1.26155 1.51988 1.24944 0.94759 0.98933 0.96091 0.86577 0.80110 0.84183 0.77330 1.19793 1.21357 1.21273 1.21496 0.93816 0.90047 1.48584 0.91218 1.20117 0.89911 0.86358 0.97673 1.62129 1.31200 1.01533 1.27178 1.22065 0.89324 1.04962 0.92066 1.23039 0.99120 0.98977 1.01700 1.23039 1.01449 0.91269 1.02669 1.22164 0.94132 0.94632 0.93419 0.90057 1.23425 0.94036 0.86454 1.00533 1.87836 1.78304 1.40604 1.24152 1.22409 0.95492 1.00769 0.82487 1.22947 0.98950 0.99650 1.01074 1.21783 0.93533 0.84896 0.94264 0.92369 1.86890 1.76774 1.44279 1.25912 0.93335 0.99194 0.91225 0.91431 0.89175 0.90206 0.90048 0.86989 0.89888 0.90536 0.89766 0.92613 0.90694 0.90936 0.79420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.50 -13.92 8.14 -34.44 -0.28 -14.20 16 8 H 0.07 1.90 4.70 -52.49 -0.25 1.65 16 9 C 0.18 4.72 3.22 -4.98 -0.02 4.71 16 10 N -0.50 -10.60 4.50 -219.98 -0.99 -11.59 16 11 C 0.02 0.50 4.55 -67.70 -0.31 0.19 16 12 C -0.19 -3.17 10.46 -26.72 -0.28 -3.45 16 13 C -0.15 -2.83 9.07 -26.72 -0.24 -3.07 16 14 C 0.07 1.22 2.33 -67.58 -0.16 1.06 16 15 H 0.08 1.40 7.88 -51.93 -0.41 0.99 16 16 C 0.03 0.64 5.00 37.21 0.19 0.82 16 17 O -0.39 -6.85 10.77 -35.23 -0.38 -7.23 16 18 C 0.07 0.93 6.69 37.20 0.25 1.17 16 19 C -0.19 -2.39 5.83 -26.59 -0.16 -2.54 16 20 C 0.12 1.84 3.49 -26.55 -0.09 1.75 16 21 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 22 O -0.53 -9.53 9.21 -35.23 -0.32 -9.85 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H -0.01 -0.27 6.83 -51.93 -0.35 -0.63 16 25 H 0.07 1.92 4.92 -51.93 -0.26 1.67 16 26 H 0.07 1.35 7.71 -51.93 -0.40 0.95 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.11 2.39 5.68 -51.93 -0.29 2.10 16 31 H 0.08 1.60 7.68 -51.92 -0.40 1.20 16 32 H 0.08 1.69 5.97 -51.93 -0.31 1.38 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.83 7.82 -51.93 -0.41 0.43 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.36 4.71 9.08 45.56 0.41 5.12 16 LS Contribution 286.42 15.07 4.32 4.32 Total: -1.00 -31.23 286.42 -7.61 -38.84 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.76 Total: 7.11 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.19 Total: -12.15 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.25 Total: -37.89 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.70 Total: -17.09 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.23 -7.61 -38.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704200256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.713 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds