Wall clock time and date at job start Mon Mar 30 2020 03:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00033 * 2 1 4 4 H 1.48504 * 109.47435 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47265 * 300.00218 * 3 2 1 6 6 H 1.48499 * 109.47077 * 60.00201 * 3 2 1 7 7 C 1.37873 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00452 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99966 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47375 * 174.74396 * 9 7 2 11 11 C 1.46900 * 111.00051 * 295.28078 * 10 9 7 12 12 C 1.53007 * 117.49881 * 145.50444 * 11 10 9 13 13 C 1.53007 * 60.00085 * 252.50907 * 12 11 10 14 14 C 1.46898 * 111.00191 * 171.32487 * 10 9 7 15 15 H 1.09000 * 109.57388 * 160.18094 * 14 10 9 16 16 C 1.53093 * 109.52079 * 40.02986 * 14 10 9 17 17 O 1.42903 * 109.41627 * 182.48197 * 16 14 10 18 18 C 1.42909 * 114.09510 * 61.15834 * 17 16 14 19 19 C 1.53085 * 109.41458 * 298.84373 * 18 17 16 20 20 C 1.53176 * 109.52288 * 280.34542 * 14 10 9 21 21 H 1.09002 * 109.61334 * 296.79145 * 20 14 10 22 22 O 1.42893 * 109.54351 * 57.01825 * 20 14 10 23 23 H 0.97000 * 120.00440 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46620 * 54.74518 * 9 7 2 25 25 H 1.08994 * 109.47111 * 294.74964 * 9 7 2 26 26 H 1.08995 * 115.55474 * 291.21282 * 11 10 9 27 27 H 1.09004 * 117.49848 * 359.97438 * 12 11 10 28 28 H 1.08995 * 117.49906 * 145.02620 * 12 11 10 29 29 H 1.08993 * 117.49868 * 252.51278 * 13 12 11 30 30 H 1.09002 * 117.49714 * 107.48225 * 13 12 11 31 31 H 1.09008 * 109.47948 * 62.50530 * 16 14 10 32 32 H 1.08997 * 109.48390 * 302.46990 * 16 14 10 33 33 H 1.08992 * 109.47999 * 178.86049 * 18 17 16 34 34 H 1.09002 * 109.47463 * 58.82544 * 18 17 16 35 35 H 1.09007 * 109.52248 * 297.70091 * 19 18 17 36 36 H 1.08999 * 109.52508 * 177.51169 * 19 18 17 37 37 H 0.96706 * 113.99839 * 179.55287 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2005 -3.6127 -0.1280 11 6 2.8864 -3.5738 -1.4265 12 6 4.3438 -4.0377 -1.4699 13 6 4.0102 -2.5502 -1.6015 14 6 1.5285 -4.9033 0.0739 15 1 2.1328 -5.7011 -0.3579 16 6 0.1561 -4.8770 -0.6041 17 8 -0.5193 -6.1120 -0.3575 18 6 -0.7618 -6.3783 1.0255 19 6 0.5736 -6.4648 1.7689 20 6 1.3438 -5.1552 1.5734 21 1 2.3189 -5.2303 2.0547 22 8 0.6069 -4.0764 2.1521 23 1 -0.4851 0.8400 0.0004 24 1 0.5553 -2.5170 -0.8395 25 1 0.6972 -2.5989 0.9329 26 1 2.2631 -3.7900 -2.2941 27 1 4.7938 -4.3714 -0.5348 28 1 4.6794 -4.5593 -2.3661 29 1 4.1263 -2.0935 -2.5842 30 1 4.2405 -1.9058 -0.7530 31 1 0.2838 -4.7408 -1.6781 32 1 -0.4330 -4.0536 -0.2005 33 1 -1.2954 -7.3234 1.1255 34 1 -1.3630 -5.5744 1.4504 35 1 1.1587 -7.2943 1.3714 36 1 0.3895 -6.6239 2.8313 37 1 0.4468 -4.1737 3.1009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704200256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:32 Heat of formation + Delta-G solvation = -75.753643 kcal Electronic energy + Delta-G solvation = -18801.258048 eV Core-core repulsion = 15965.033203 eV Total energy + Delta-G solvation = -2836.224845 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.07240 -38.69601 -37.22410 -35.30853 -34.39843 -32.52881 -30.54276 -28.18996 -25.87630 -24.53133 -23.99087 -23.04239 -21.35092 -20.40894 -18.76636 -17.91180 -17.36161 -17.01875 -16.58198 -16.36214 -16.23497 -15.67360 -15.13472 -14.70403 -14.30022 -14.08682 -13.81254 -13.68652 -13.08204 -12.94293 -12.74985 -12.60056 -12.41768 -12.35442 -11.89067 -11.69501 -11.52761 -11.26882 -11.02282 -10.72250 -10.64293 -10.46685 -10.27448 -8.88082 -8.08392 -6.13197 1.40421 1.41178 1.53513 2.44889 2.80803 3.09230 3.24015 3.25978 3.46247 3.82752 3.94921 4.01552 4.09542 4.19338 4.26947 4.33608 4.49751 4.55323 4.66151 4.74490 4.82999 4.88587 4.93738 4.96799 5.09139 5.18027 5.20105 5.40836 5.47647 5.72174 5.85374 6.14368 6.25159 6.49827 6.75518 7.02774 7.11983 7.52966 9.03084 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024589 B = 0.008695 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.449841 B = 3219.312552 C = 3827.633666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.003 4.003 3 Si 0.957 3.043 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.204 3.796 10 N -0.496 5.496 11 C -0.006 4.006 12 C -0.145 4.145 13 C -0.162 4.162 14 C 0.063 3.937 15 H 0.100 0.900 16 C 0.048 3.952 17 O -0.400 6.400 18 C 0.055 3.945 19 C -0.173 4.173 20 C 0.112 3.888 21 H 0.067 0.933 22 O -0.566 6.566 23 H 0.257 0.743 24 H -0.049 1.049 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.118 0.882 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.189 -13.178 2.625 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.200 4.200 3 Si 0.783 3.217 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.093 0.907 9 C 0.079 3.921 10 N -0.221 5.221 11 C -0.115 4.115 12 C -0.183 4.183 13 C -0.199 4.199 14 C -0.046 4.046 15 H 0.118 0.882 16 C -0.030 4.030 17 O -0.318 6.318 18 C -0.021 4.021 19 C -0.211 4.211 20 C 0.053 3.947 21 H 0.084 0.916 22 O -0.374 6.374 23 H 0.066 0.934 24 H -0.031 1.031 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.131 0.869 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.136 0.864 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.363 -12.929 2.237 13.827 hybrid contribution -0.736 1.214 -0.052 1.420 sum 3.627 -11.715 2.186 12.457 Atomic orbital electron populations 1.70128 1.07619 1.26966 1.53414 1.25811 0.95547 1.02687 0.95938 0.85518 0.79319 0.79653 0.77245 1.18475 1.21089 1.20960 1.21911 0.94280 0.91091 1.47503 0.90683 1.19674 0.89677 0.87700 0.95070 1.62058 1.30155 1.01652 1.28215 1.22214 0.90737 1.07336 0.91260 1.23079 0.95212 0.96562 1.03430 1.22988 1.01941 0.92690 1.02300 1.22339 0.93333 0.93435 0.95512 0.88238 1.23059 0.94261 0.86049 0.99654 1.87816 1.78184 1.39161 1.26642 1.22726 0.96795 1.01776 0.80788 1.22854 0.97385 0.97884 1.02998 1.21869 0.94432 0.86025 0.92383 0.91556 1.86820 1.77142 1.45702 1.27701 0.93414 1.03143 0.93211 0.92124 0.88462 0.86900 0.88959 0.89382 0.91064 0.94585 0.86443 0.94075 0.89028 0.87657 0.77249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.39 13.29 21.44 0.28 -58.10 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.96 45.50 29.54 68.60 2.03 47.52 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 7 C -0.51 -28.99 8.14 25.60 0.21 -28.78 16 8 H 0.08 4.13 4.70 -2.91 -0.01 4.12 16 9 C 0.20 10.97 3.22 85.56 0.28 11.24 16 10 N -0.50 -21.43 4.50 -849.87 -3.82 -25.25 16 11 C -0.01 -0.25 4.55 44.92 0.20 -0.05 16 12 C -0.15 -4.42 10.46 30.60 0.32 -4.10 16 13 C -0.16 -6.08 9.07 30.60 0.28 -5.80 16 14 C 0.06 2.29 2.33 45.01 0.10 2.40 16 15 H 0.10 3.23 7.88 -2.39 -0.02 3.22 16 16 C 0.05 1.90 5.00 72.01 0.36 2.26 16 17 O -0.40 -13.83 10.77 -148.98 -1.60 -15.43 16 18 C 0.06 1.47 6.69 72.01 0.48 1.95 16 19 C -0.17 -3.86 5.83 30.68 0.18 -3.69 16 20 C 0.11 3.44 3.49 30.71 0.11 3.55 16 21 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 22 O -0.57 -20.32 9.21 -148.98 -1.37 -21.70 16 23 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 24 H -0.05 -2.97 6.83 -2.39 -0.02 -2.99 16 25 H 0.05 2.90 4.92 -2.39 -0.01 2.88 16 26 H 0.06 2.45 7.71 -2.39 -0.02 2.44 16 27 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 28 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 30 H 0.09 3.74 5.68 -2.39 -0.01 3.73 16 31 H 0.07 2.89 7.68 -2.38 -0.02 2.88 16 32 H 0.04 1.71 5.97 -2.39 -0.01 1.69 16 33 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.04 1.21 7.82 -2.39 -0.02 1.20 16 35 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.38 9.73 9.08 -74.05 -0.67 9.06 16 Total: -1.00 -69.81 286.42 -1.11 -70.92 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.40 Total: 22.81 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 2.98 Total: -20.76 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -3.54 Total: -83.36 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -2.98 Total: -37.13 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -69.81 -1.11 -70.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704200256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.838 kcal (2) G-P(sol) polarization free energy of solvation -69.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds