Wall clock time and date at job start Mon Mar 30 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00186 * 2 1 4 4 H 1.48497 * 109.47331 * 269.99778 * 3 2 1 5 5 H 1.48502 * 109.47180 * 30.00094 * 3 2 1 6 6 H 1.48501 * 109.47036 * 150.00191 * 3 2 1 7 7 C 1.37888 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99306 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00089 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47079 * 180.17890 * 9 7 2 11 11 C 1.46902 * 110.99668 * 77.44436 * 10 9 7 12 12 C 1.53001 * 117.50244 * 358.00846 * 11 10 9 13 13 C 1.53002 * 60.00038 * 252.51009 * 12 11 10 14 14 C 1.46901 * 111.00208 * 201.39254 * 10 9 7 15 15 H 1.09000 * 109.52584 * 196.05111 * 14 10 9 16 16 C 1.53089 * 109.52306 * 316.18568 * 14 10 9 17 17 O 1.42907 * 109.41506 * 177.51380 * 16 14 10 18 18 C 1.42907 * 114.09326 * 298.83768 * 17 16 14 19 19 C 1.53097 * 109.41509 * 61.15973 * 18 17 16 20 20 C 1.53176 * 109.16206 * 302.38939 * 19 18 17 21 21 H 1.08997 * 109.54460 * 176.84646 * 20 19 18 22 22 O 1.42895 * 109.54243 * 297.11420 * 20 19 18 23 23 H 0.96996 * 120.00363 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47440 * 60.17929 * 9 7 2 25 25 H 1.08998 * 109.47087 * 300.18133 * 9 7 2 26 26 H 1.09006 * 115.56289 * 143.70192 * 11 10 9 27 27 H 1.08999 * 117.49233 * 0.02562 * 12 11 10 28 28 H 1.08995 * 117.49914 * 145.01873 * 12 11 10 29 29 H 1.08993 * 117.49995 * 252.50806 * 13 12 11 30 30 H 1.09001 * 117.51253 * 107.47566 * 13 12 11 31 31 H 1.09004 * 109.48122 * 297.48736 * 16 14 10 32 32 H 1.08995 * 109.48343 * 57.51613 * 16 14 10 33 33 H 1.09003 * 109.47948 * 181.14035 * 18 17 16 34 34 H 1.08994 * 109.48148 * 301.17145 * 18 17 16 35 35 H 1.09003 * 109.52210 * 62.29496 * 19 18 17 36 36 H 1.08998 * 109.51849 * 182.48708 * 19 18 17 37 37 H 0.96695 * 114.00545 * 299.55486 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2055 -3.6158 0.0022 11 6 2.7701 -3.8209 1.3429 12 6 2.3326 -2.8582 2.4486 13 6 3.7451 -2.7653 1.8680 14 6 1.5786 -4.8462 -0.4988 15 1 2.1925 -5.7047 -0.2267 16 6 0.1852 -4.9977 0.1168 17 8 -0.4453 -6.1642 -0.4162 18 6 -0.6357 -6.1290 -1.8321 19 6 0.7248 -6.0229 -2.5260 20 6 1.4493 -4.7705 -2.0233 21 1 2.4416 -4.7187 -2.4713 22 8 0.6997 -3.6081 -2.3823 23 1 -0.4850 0.8400 0.0004 24 1 0.6271 -2.5577 -0.8935 25 1 0.6216 -2.5561 0.8864 26 1 2.9533 -4.8585 1.6223 27 1 1.6256 -2.0728 2.1813 28 1 2.2279 -3.2623 3.4554 29 1 4.5697 -3.1082 2.4928 30 1 3.9679 -1.9187 1.2185 31 1 0.2744 -5.0951 1.1988 32 1 -0.4147 -4.1193 -0.1209 33 1 -1.1378 -7.0414 -2.1541 34 1 -1.2465 -5.2655 -2.0954 35 1 1.3210 -6.9058 -2.2957 36 1 0.5792 -5.9515 -3.6039 37 1 0.5787 -3.4968 -3.3352 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704200278.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:36 Heat of formation + Delta-G solvation = -45.930038 kcal Electronic energy + Delta-G solvation = -18958.248173 eV Core-core repulsion = 16123.316577 eV Total energy + Delta-G solvation = -2834.931596 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73826 -37.42786 -35.85897 -33.17845 -32.48904 -31.27612 -28.68077 -26.51129 -24.45014 -22.96199 -22.58484 -21.36499 -19.69172 -18.72237 -16.89519 -16.49092 -16.02459 -15.57646 -15.08334 -14.73486 -14.38757 -14.18597 -13.81028 -13.18581 -12.59277 -12.38929 -12.11032 -11.79545 -11.55591 -11.40592 -11.16360 -10.87779 -10.64128 -10.59695 -10.41188 -10.02803 -9.89373 -9.55098 -9.39964 -9.36182 -9.06301 -8.77865 -8.20030 -6.97965 -5.90602 -3.88397 3.36655 3.42959 3.46244 4.14388 4.48072 4.65474 4.66186 4.90084 5.07535 5.20956 5.31753 5.40656 5.45498 5.58712 5.73350 5.76403 5.88105 5.91946 5.95824 6.07664 6.13038 6.16477 6.33773 6.40183 6.50122 6.58253 7.02319 7.26614 7.41729 7.52231 7.67853 7.96341 8.11815 8.30126 8.50499 8.67298 9.18951 9.71906 11.19377 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.008885 C = 0.007613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.770215 B = 3150.698164 C = 3677.174493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.889 3.111 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.493 4.493 8 H 0.063 0.937 9 C 0.171 3.829 10 N -0.490 5.490 11 C 0.018 3.982 12 C -0.210 4.210 13 C -0.172 4.172 14 C 0.066 3.934 15 H 0.080 0.920 16 C 0.033 3.967 17 O -0.391 6.391 18 C 0.065 3.935 19 C -0.187 4.187 20 C 0.113 3.887 21 H 0.060 0.940 22 O -0.529 6.529 23 H 0.258 0.742 24 H 0.078 0.922 25 H -0.002 1.002 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.483 -10.708 -3.056 11.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.717 3.283 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.532 4.532 8 H 0.081 0.919 9 C 0.047 3.953 10 N -0.213 5.213 11 C -0.092 4.092 12 C -0.249 4.249 13 C -0.210 4.210 14 C -0.044 4.044 15 H 0.098 0.902 16 C -0.045 4.045 17 O -0.309 6.309 18 C -0.012 4.012 19 C -0.226 4.226 20 C 0.053 3.947 21 H 0.078 0.922 22 O -0.334 6.334 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.015 0.985 26 H 0.109 0.891 27 H 0.146 0.854 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.634 -10.547 -2.621 10.990 hybrid contribution 0.014 0.868 -0.190 0.889 sum 1.648 -9.679 -2.812 10.213 Atomic orbital electron populations 1.69959 1.05835 1.26287 1.51781 1.24920 0.94757 0.98816 0.96132 0.86644 0.79832 0.83879 0.77907 1.20950 1.21547 1.19988 1.21269 0.93357 0.89994 1.48560 0.91885 1.20405 0.90373 0.86440 0.98046 1.62216 1.35978 1.03498 1.19622 1.22459 1.04025 0.93656 0.89049 1.23576 0.99997 1.05101 0.96177 1.23152 0.91970 1.02561 1.03340 1.22283 0.94352 0.94494 0.93316 0.90168 1.23477 0.94431 0.88505 0.98043 1.87834 1.80528 1.41501 1.21058 1.22417 0.95585 1.01629 0.81547 1.22945 0.98885 1.00096 1.00672 1.21749 0.93857 0.84019 0.95041 0.92248 1.86915 1.75945 1.43685 1.26846 0.93257 0.90466 0.98469 0.89135 0.85364 0.91230 0.90967 0.87082 0.89732 0.90759 0.89773 0.92583 0.90734 0.90909 0.79531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.49 -13.47 6.92 -34.44 -0.24 -13.71 16 8 H 0.06 1.74 5.56 -52.49 -0.29 1.45 16 9 C 0.17 4.29 2.62 -4.98 -0.01 4.28 16 10 N -0.49 -10.44 4.51 -219.98 -0.99 -11.43 16 11 C 0.02 0.35 5.72 -67.71 -0.39 -0.04 16 12 C -0.21 -4.28 9.13 -26.73 -0.24 -4.52 16 13 C -0.17 -3.39 9.86 -26.73 -0.26 -3.65 16 14 C 0.07 1.19 2.31 -67.57 -0.16 1.03 16 15 H 0.08 1.35 7.68 -51.93 -0.40 0.95 16 16 C 0.03 0.62 5.24 37.20 0.19 0.82 16 17 O -0.39 -6.74 10.77 -35.23 -0.38 -7.12 16 18 C 0.07 0.92 6.69 37.21 0.25 1.17 16 19 C -0.19 -2.39 5.84 -26.59 -0.16 -2.55 16 20 C 0.11 1.83 3.48 -26.55 -0.09 1.74 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 22 O -0.53 -9.65 9.00 -35.23 -0.32 -9.97 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.08 2.08 4.17 -51.93 -0.22 1.87 16 25 H 0.00 -0.06 5.66 -51.93 -0.29 -0.36 16 26 H 0.09 1.57 7.70 -51.93 -0.40 1.17 16 27 H 0.13 3.12 5.06 -51.93 -0.26 2.86 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.11 2.47 5.50 -51.93 -0.29 2.19 16 31 H 0.08 1.57 7.95 -51.93 -0.41 1.16 16 32 H 0.07 1.60 6.03 -51.93 -0.31 1.29 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.84 7.82 -51.93 -0.41 0.43 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.36 4.93 9.09 45.56 0.41 5.34 16 LS Contribution 281.07 15.07 4.24 4.24 Total: -1.00 -30.43 281.07 -7.48 -37.91 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -4.54 Total: 9.36 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -1.20 Total: -14.02 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: -0.26 Total: -37.13 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.70 Total: -17.09 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.43 -7.48 -37.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704200278.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.021 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds