Wall clock time and date at job start Mon Mar 30 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00186 * 2 1 4 4 H 1.48497 * 109.47331 * 269.99778 * 3 2 1 5 5 H 1.48502 * 109.47180 * 30.00094 * 3 2 1 6 6 H 1.48501 * 109.47036 * 150.00191 * 3 2 1 7 7 C 1.37888 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99306 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00089 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47079 * 180.17890 * 9 7 2 11 11 C 1.46902 * 110.99668 * 77.44436 * 10 9 7 12 12 C 1.53001 * 117.50244 * 358.00846 * 11 10 9 13 13 C 1.53002 * 60.00038 * 252.51009 * 12 11 10 14 14 C 1.46901 * 111.00208 * 201.39254 * 10 9 7 15 15 H 1.09000 * 109.52584 * 196.05111 * 14 10 9 16 16 C 1.53089 * 109.52306 * 316.18568 * 14 10 9 17 17 O 1.42907 * 109.41506 * 177.51380 * 16 14 10 18 18 C 1.42907 * 114.09326 * 298.83768 * 17 16 14 19 19 C 1.53097 * 109.41509 * 61.15973 * 18 17 16 20 20 C 1.53176 * 109.16206 * 302.38939 * 19 18 17 21 21 H 1.08997 * 109.54460 * 176.84646 * 20 19 18 22 22 O 1.42895 * 109.54243 * 297.11420 * 20 19 18 23 23 H 0.96996 * 120.00363 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47440 * 60.17929 * 9 7 2 25 25 H 1.08998 * 109.47087 * 300.18133 * 9 7 2 26 26 H 1.09006 * 115.56289 * 143.70192 * 11 10 9 27 27 H 1.08999 * 117.49233 * 0.02562 * 12 11 10 28 28 H 1.08995 * 117.49914 * 145.01873 * 12 11 10 29 29 H 1.08993 * 117.49995 * 252.50806 * 13 12 11 30 30 H 1.09001 * 117.51253 * 107.47566 * 13 12 11 31 31 H 1.09004 * 109.48122 * 297.48736 * 16 14 10 32 32 H 1.08995 * 109.48343 * 57.51613 * 16 14 10 33 33 H 1.09003 * 109.47948 * 181.14035 * 18 17 16 34 34 H 1.08994 * 109.48148 * 301.17145 * 18 17 16 35 35 H 1.09003 * 109.52210 * 62.29496 * 19 18 17 36 36 H 1.08998 * 109.51849 * 182.48708 * 19 18 17 37 37 H 0.96695 * 114.00545 * 299.55486 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2055 -3.6158 0.0022 11 6 2.7701 -3.8209 1.3429 12 6 2.3326 -2.8582 2.4486 13 6 3.7451 -2.7653 1.8680 14 6 1.5786 -4.8462 -0.4988 15 1 2.1925 -5.7047 -0.2267 16 6 0.1852 -4.9977 0.1168 17 8 -0.4453 -6.1642 -0.4162 18 6 -0.6357 -6.1290 -1.8321 19 6 0.7248 -6.0229 -2.5260 20 6 1.4493 -4.7705 -2.0233 21 1 2.4416 -4.7187 -2.4713 22 8 0.6997 -3.6081 -2.3823 23 1 -0.4850 0.8400 0.0004 24 1 0.6271 -2.5577 -0.8935 25 1 0.6216 -2.5561 0.8864 26 1 2.9533 -4.8585 1.6223 27 1 1.6256 -2.0728 2.1813 28 1 2.2279 -3.2623 3.4554 29 1 4.5697 -3.1082 2.4928 30 1 3.9679 -1.9187 1.2185 31 1 0.2744 -5.0951 1.1988 32 1 -0.4147 -4.1193 -0.1209 33 1 -1.1378 -7.0414 -2.1541 34 1 -1.2465 -5.2655 -2.0954 35 1 1.3210 -6.9058 -2.2957 36 1 0.5792 -5.9515 -3.6039 37 1 0.5787 -3.4968 -3.3352 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704200278.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:36 Heat of formation + Delta-G solvation = -69.449118 kcal Electronic energy + Delta-G solvation = -18959.268037 eV Core-core repulsion = 16123.316577 eV Total energy + Delta-G solvation = -2835.951460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.14951 -38.97326 -37.21588 -34.86536 -34.45650 -32.49550 -30.37831 -28.34047 -25.84276 -24.74621 -23.99064 -22.98825 -21.08587 -20.34551 -18.72311 -17.88326 -17.50590 -16.98286 -16.75974 -16.46530 -15.93520 -15.75368 -15.20130 -14.54323 -14.34975 -13.94016 -13.65268 -13.41510 -13.15827 -12.97918 -12.79053 -12.49782 -12.42858 -12.16342 -11.92703 -11.60278 -11.59891 -11.21660 -11.02021 -10.94380 -10.70734 -10.39971 -10.23145 -8.68050 -8.05507 -6.09659 1.40748 1.40947 1.51166 2.45102 2.81892 3.10494 3.24481 3.37879 3.49856 3.83650 3.96756 4.06929 4.11873 4.24077 4.27530 4.30893 4.47423 4.55124 4.68898 4.74965 4.85976 4.88109 4.94877 4.99276 5.10686 5.20653 5.34546 5.38724 5.64740 5.79393 5.88471 6.16529 6.28838 6.56702 6.77403 7.01485 7.15747 7.54671 9.03752 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.008885 C = 0.007613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.770215 B = 3150.698164 C = 3677.174493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.268 1.268 7 C -0.495 4.495 8 H 0.059 0.941 9 C 0.194 3.806 10 N -0.500 5.500 11 C 0.017 3.983 12 C -0.218 4.218 13 C -0.166 4.166 14 C 0.061 3.939 15 H 0.103 0.897 16 C 0.048 3.952 17 O -0.399 6.399 18 C 0.056 3.944 19 C -0.173 4.173 20 C 0.109 3.891 21 H 0.064 0.936 22 O -0.561 6.561 23 H 0.257 0.743 24 H 0.060 0.940 25 H -0.033 1.033 26 H 0.124 0.876 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.117 0.883 34 H 0.040 0.960 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.938 -12.387 -3.572 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.069 3.931 10 N -0.223 5.223 11 C -0.092 4.092 12 C -0.256 4.256 13 C -0.204 4.204 14 C -0.048 4.048 15 H 0.121 0.879 16 C -0.030 4.030 17 O -0.317 6.317 18 C -0.020 4.020 19 C -0.211 4.211 20 C 0.050 3.950 21 H 0.082 0.918 22 O -0.369 6.369 23 H 0.066 0.934 24 H 0.078 0.922 25 H -0.016 1.016 26 H 0.142 0.858 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.135 0.865 34 H 0.059 0.941 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.104 -12.243 -3.156 13.018 hybrid contribution -0.461 1.319 -0.053 1.398 sum 2.643 -10.924 -3.208 11.688 Atomic orbital electron populations 1.70092 1.07310 1.26901 1.53297 1.25680 0.95486 1.02175 0.96144 0.85673 0.78751 0.79912 0.78017 1.20403 1.21414 1.19224 1.21564 0.93234 0.91265 1.47302 0.92320 1.19956 0.90127 0.87268 0.95776 1.62103 1.35178 1.04072 1.20907 1.22711 1.03356 0.95180 0.87965 1.23395 0.99701 1.04595 0.97923 1.23122 0.92537 1.01637 1.03106 1.22475 0.93907 0.93625 0.94814 0.87865 1.23134 0.94353 0.87617 0.97938 1.87819 1.80429 1.40270 1.23165 1.22707 0.96722 1.02626 0.79953 1.22845 0.97479 0.98621 1.02132 1.21860 0.94446 0.85021 0.93686 0.91831 1.86832 1.76363 1.45112 1.28597 0.93427 0.92235 1.01572 0.85820 0.89942 0.88501 0.87278 0.90090 0.90252 0.94755 0.86504 0.94146 0.88971 0.87922 0.77559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.95 45.49 29.54 68.60 2.03 47.51 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.49 -27.78 6.92 25.60 0.18 -27.60 16 8 H 0.06 3.29 5.56 -2.91 -0.02 3.28 16 9 C 0.19 10.06 2.62 85.55 0.22 10.28 16 10 N -0.50 -21.21 4.51 -849.88 -3.83 -25.04 16 11 C 0.02 0.65 5.72 44.92 0.26 0.91 16 12 C -0.22 -8.83 9.13 30.60 0.28 -8.55 16 13 C -0.17 -6.31 9.86 30.60 0.30 -6.01 16 14 C 0.06 2.15 2.31 45.01 0.10 2.25 16 15 H 0.10 3.16 7.68 -2.39 -0.02 3.14 16 16 C 0.05 1.80 5.24 72.01 0.38 2.18 16 17 O -0.40 -13.25 10.77 -148.98 -1.60 -14.85 16 18 C 0.06 1.46 6.69 72.01 0.48 1.94 16 19 C -0.17 -3.85 5.84 30.69 0.18 -3.67 16 20 C 0.11 3.36 3.48 30.71 0.11 3.47 16 21 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 22 O -0.56 -20.57 9.00 -148.98 -1.34 -21.91 16 23 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 24 H 0.06 3.36 4.17 -2.39 -0.01 3.35 16 25 H -0.03 -1.91 5.66 -2.39 -0.01 -1.93 16 26 H 0.12 3.88 7.70 -2.38 -0.02 3.86 16 27 H 0.08 4.18 5.06 -2.39 -0.01 4.17 16 28 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 29 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 30 H 0.08 3.59 5.50 -2.39 -0.01 3.58 16 31 H 0.08 2.98 7.95 -2.38 -0.02 2.96 16 32 H 0.03 1.56 6.03 -2.39 -0.01 1.54 16 33 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.04 1.18 7.82 -2.39 -0.02 1.16 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.38 10.22 9.09 -74.06 -0.67 9.54 16 Total: -1.00 -67.88 281.07 -1.11 -68.99 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.41 Total: 26.20 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 2.95 Total: -24.23 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -3.55 Total: -81.72 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -2.95 Total: -36.76 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -67.88 -1.11 -68.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704200278.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.459 kcal (2) G-P(sol) polarization free energy of solvation -67.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds