Wall clock time and date at job start Mon Mar 30 2020 04:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47259 * 2 1 4 4 C 1.52991 * 109.47075 * 304.99912 * 3 2 1 5 5 O 1.42903 * 109.47097 * 64.99966 * 3 2 1 6 6 C 1.42899 * 114.00030 * 60.00002 * 5 3 2 7 7 C 1.50695 * 109.47285 * 184.99596 * 3 2 1 8 8 O 1.21298 * 119.99813 * 24.99984 * 7 3 2 9 9 N 1.34780 * 120.00355 * 204.99879 * 7 3 2 10 10 C 1.37094 * 119.99939 * 180.02562 * 9 7 3 11 11 H 1.08000 * 119.99700 * 224.38796 * 10 9 7 12 12 C 1.38951 * 120.00118 * 44.38726 * 10 9 7 13 13 N 1.31411 * 119.99983 * 18.10386 * 12 10 9 14 14 Si 1.86797 * 119.99909 * 198.09801 * 12 10 9 15 15 H 1.48503 * 109.47253 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47165 * 120.00076 * 14 12 10 17 17 H 1.48504 * 109.47276 * 240.00171 * 14 12 10 18 18 C 1.46502 * 119.99711 * 0.02562 * 9 7 3 19 19 C 1.52997 * 117.49837 * 184.48383 * 18 9 7 20 20 C 1.53005 * 117.49457 * 115.82612 * 18 9 7 21 21 H 1.08999 * 109.46665 * 60.00108 * 1 2 3 22 22 H 1.08995 * 109.47140 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47299 * 300.00125 * 1 2 3 24 24 H 1.08997 * 109.47142 * 239.99485 * 2 1 3 25 25 H 1.09006 * 109.46988 * 119.99647 * 2 1 3 26 26 H 1.08998 * 109.47342 * 300.00180 * 4 3 2 27 27 H 1.09003 * 109.47357 * 60.00231 * 4 3 2 28 28 H 1.09007 * 109.47460 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.47054 * 60.00577 * 6 5 3 30 30 H 1.09004 * 109.47098 * 180.02562 * 6 5 3 31 31 H 1.09003 * 109.47362 * 299.99810 * 6 5 3 32 32 H 0.96994 * 119.99786 * 174.95336 * 13 12 10 33 33 H 1.08997 * 115.55040 * 330.16120 * 18 9 7 34 34 H 1.08997 * 117.49567 * 0.02562 * 19 18 9 35 35 H 1.08995 * 117.49722 * 145.02001 * 19 18 9 36 36 H 1.09000 * 117.49505 * 214.97910 * 20 18 9 37 37 H 1.08999 * 117.50179 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4300 2.1991 -1.1816 5 8 1.6620 2.0814 1.2211 6 6 2.1824 1.4502 2.3927 7 6 3.5419 1.4443 -0.1237 8 8 4.1087 0.5062 -0.6434 9 7 4.2554 2.4882 0.3430 10 6 5.6216 2.4900 0.2299 11 1 6.2323 2.7942 1.0671 12 6 6.2207 2.1004 -0.9617 13 7 5.5185 2.0739 -2.0722 14 14 8.0242 1.6144 -0.9853 15 1 8.5854 1.7281 0.3849 16 1 8.1530 0.2125 -1.4576 17 1 8.7678 2.5158 -1.9016 18 6 3.5708 3.6209 0.9712 19 6 4.4247 4.8208 1.3857 20 6 3.8523 3.8835 2.4520 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.7184 1.7118 -2.1129 27 1 0.3437 2.1979 -1.0920 28 1 1.7930 3.2269 -1.1814 29 1 3.2717 1.4517 2.3528 30 1 1.8501 1.9945 3.2767 31 1 1.8220 0.4226 2.4424 32 1 5.9528 1.8731 -2.9159 33 1 2.5633 3.8219 0.6071 34 1 5.4958 4.7676 1.1907 35 1 3.9789 5.8112 1.2946 36 1 3.0301 4.2577 3.0620 37 1 4.5466 3.2132 2.9589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706797056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:34 Heat of formation + Delta-G solvation = -35.836509 kcal Electronic energy + Delta-G solvation = -19374.847028 eV Core-core repulsion = 16540.353120 eV Total energy + Delta-G solvation = -2834.493908 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.68976 -36.89716 -35.99814 -33.22974 -32.59849 -30.85785 -29.25003 -25.92680 -25.29929 -24.36134 -21.71002 -21.28376 -20.37892 -18.79825 -17.06994 -15.95232 -15.52001 -15.20649 -14.58625 -14.32682 -14.11881 -13.62219 -13.30000 -12.92374 -12.73844 -11.97954 -11.90152 -11.73126 -11.50540 -11.35380 -11.21676 -10.92712 -10.88402 -10.73995 -10.52431 -10.44091 -10.23925 -10.09991 -9.78353 -9.72610 -9.05023 -8.64284 -7.73458 -6.96867 -6.09653 -3.84594 3.29265 3.39058 3.40841 4.06765 4.29260 4.35677 4.83520 4.92026 5.25380 5.34655 5.48486 5.58359 5.77207 5.82471 5.86944 5.91711 5.94655 6.00943 6.02049 6.18296 6.26407 6.32321 6.34672 6.36956 6.42418 6.49684 6.59703 6.72211 6.83479 6.92336 7.07123 7.60351 7.69685 8.30892 9.09329 9.18916 9.69304 10.31831 10.99248 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.011095 C = 0.008875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.709493 B = 2522.997100 C = 3154.310477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.103 3.897 4 C -0.129 4.129 5 O -0.372 6.372 6 C 0.027 3.973 7 C 0.465 3.535 8 O -0.534 6.534 9 N -0.420 5.420 10 C -0.349 4.349 11 H 0.077 0.923 12 C 0.073 3.927 13 N -0.832 5.832 14 Si 0.910 3.090 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.285 1.285 18 C 0.093 3.907 19 C -0.188 4.188 20 C -0.205 4.205 21 H 0.056 0.944 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 1.227 5.471 9.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.060 3.940 4 C -0.186 4.186 5 O -0.291 6.291 6 C -0.069 4.069 7 C 0.252 3.748 8 O -0.412 6.412 9 N -0.140 5.140 10 C -0.476 4.476 11 H 0.095 0.905 12 C -0.137 4.137 13 N -0.466 5.466 14 Si 0.738 3.262 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.212 1.212 18 C -0.013 4.013 19 C -0.225 4.225 20 C -0.244 4.244 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.135 0.865 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.796 0.788 4.992 9.291 hybrid contribution 1.114 -0.314 -0.031 1.157 sum -6.683 0.474 4.961 8.336 Atomic orbital electron populations 1.21772 0.95766 1.00760 1.02054 1.21832 0.95529 0.96219 1.03509 1.21757 0.93594 0.92889 0.85746 1.21719 0.99997 1.00812 0.96062 1.87884 1.74333 1.53442 1.13444 1.22793 0.99867 0.96672 0.87586 1.20247 0.87706 0.83389 0.83496 1.90524 1.71116 1.35412 1.44117 1.42809 1.05440 1.12734 1.53031 1.18919 0.80245 1.50303 0.98101 0.90548 1.25233 0.98557 0.95215 0.94703 1.69829 1.36268 1.42501 0.97965 0.86180 0.83438 0.78525 0.78087 1.19625 1.20707 1.21181 1.21869 0.96209 0.90133 0.93082 1.23163 1.01465 0.93988 1.03914 1.23269 1.03137 1.04301 0.93670 0.92467 0.93367 0.92550 0.90129 0.91883 0.90811 0.91954 0.91800 0.92639 0.90446 0.94824 0.92701 0.86455 0.87881 0.90094 0.89961 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.32 37.16 0.35 -1.74 16 2 C -0.13 -2.41 4.41 -26.73 -0.12 -2.53 16 3 C 0.10 2.06 0.39 -91.78 -0.04 2.03 16 4 C -0.13 -2.38 8.18 37.15 0.30 -2.08 16 5 O -0.37 -6.77 7.00 -35.23 -0.25 -7.02 16 6 C 0.03 0.46 8.44 101.05 0.85 1.31 16 7 C 0.46 11.80 4.76 -10.99 -0.05 11.75 16 8 O -0.53 -15.74 13.76 5.54 0.08 -15.66 16 9 N -0.42 -10.59 2.37 -107.73 -0.26 -10.84 16 10 C -0.35 -9.60 7.87 -14.93 -0.12 -9.72 16 11 H 0.08 2.05 7.32 -52.49 -0.38 1.67 16 12 C 0.07 2.08 4.39 -17.47 -0.08 2.00 16 13 N -0.83 -24.70 11.74 55.50 0.65 -24.05 16 14 Si 0.91 22.11 29.59 -169.99 -5.03 17.08 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.09 1.94 4.10 -67.93 -0.28 1.67 16 19 C -0.19 -3.56 9.81 -26.69 -0.26 -3.83 16 20 C -0.20 -3.65 8.10 -26.69 -0.22 -3.86 16 21 H 0.06 0.77 6.34 -51.93 -0.33 0.44 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.78 7.82 -51.93 -0.41 0.37 16 24 H 0.08 1.60 7.68 -51.93 -0.40 1.20 16 25 H 0.06 1.15 6.29 -51.93 -0.33 0.82 16 26 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.06 0.96 6.35 -51.93 -0.33 0.63 16 28 H 0.06 1.23 6.99 -51.92 -0.36 0.87 16 29 H 0.06 1.08 5.43 -51.93 -0.28 0.79 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.03 0.52 6.31 -51.93 -0.33 0.20 16 32 H 0.26 7.46 8.32 -40.82 -0.34 7.12 16 33 H 0.12 2.38 5.09 -51.93 -0.26 2.12 16 34 H 0.10 2.15 6.76 -51.93 -0.35 1.80 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.60 7.98 -51.93 -0.41 1.19 16 LS Contribution 284.94 15.07 4.29 4.29 Total: -1.00 -31.74 284.94 -5.59 -37.32 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.43 Total: 3.88 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 0.35 Total: -5.00 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.40 Total: -34.90 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.17 Total: -22.68 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.74 -5.59 -37.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706797056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.488 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds