Wall clock time and date at job start Mon Mar 30 2020 04:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47259 * 2 1 4 4 C 1.52991 * 109.47075 * 304.99912 * 3 2 1 5 5 O 1.42903 * 109.47097 * 64.99966 * 3 2 1 6 6 C 1.42899 * 114.00030 * 60.00002 * 5 3 2 7 7 C 1.50695 * 109.47285 * 184.99596 * 3 2 1 8 8 O 1.21298 * 119.99813 * 24.99984 * 7 3 2 9 9 N 1.34780 * 120.00355 * 204.99879 * 7 3 2 10 10 C 1.37094 * 119.99939 * 180.02562 * 9 7 3 11 11 H 1.08000 * 119.99700 * 224.38796 * 10 9 7 12 12 C 1.38951 * 120.00118 * 44.38726 * 10 9 7 13 13 N 1.31411 * 119.99983 * 18.10386 * 12 10 9 14 14 Si 1.86797 * 119.99909 * 198.09801 * 12 10 9 15 15 H 1.48503 * 109.47253 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47165 * 120.00076 * 14 12 10 17 17 H 1.48504 * 109.47276 * 240.00171 * 14 12 10 18 18 C 1.46502 * 119.99711 * 0.02562 * 9 7 3 19 19 C 1.52997 * 117.49837 * 184.48383 * 18 9 7 20 20 C 1.53005 * 117.49457 * 115.82612 * 18 9 7 21 21 H 1.08999 * 109.46665 * 60.00108 * 1 2 3 22 22 H 1.08995 * 109.47140 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47299 * 300.00125 * 1 2 3 24 24 H 1.08997 * 109.47142 * 239.99485 * 2 1 3 25 25 H 1.09006 * 109.46988 * 119.99647 * 2 1 3 26 26 H 1.08998 * 109.47342 * 300.00180 * 4 3 2 27 27 H 1.09003 * 109.47357 * 60.00231 * 4 3 2 28 28 H 1.09007 * 109.47460 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.47054 * 60.00577 * 6 5 3 30 30 H 1.09004 * 109.47098 * 180.02562 * 6 5 3 31 31 H 1.09003 * 109.47362 * 299.99810 * 6 5 3 32 32 H 0.96994 * 119.99786 * 174.95336 * 13 12 10 33 33 H 1.08997 * 115.55040 * 330.16120 * 18 9 7 34 34 H 1.08997 * 117.49567 * 0.02562 * 19 18 9 35 35 H 1.08995 * 117.49722 * 145.02001 * 19 18 9 36 36 H 1.09000 * 117.49505 * 214.97910 * 20 18 9 37 37 H 1.08999 * 117.50179 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4300 2.1991 -1.1816 5 8 1.6620 2.0814 1.2211 6 6 2.1824 1.4502 2.3927 7 6 3.5419 1.4443 -0.1237 8 8 4.1087 0.5062 -0.6434 9 7 4.2554 2.4882 0.3430 10 6 5.6216 2.4900 0.2299 11 1 6.2323 2.7942 1.0671 12 6 6.2207 2.1004 -0.9617 13 7 5.5185 2.0739 -2.0722 14 14 8.0242 1.6144 -0.9853 15 1 8.5854 1.7281 0.3849 16 1 8.1530 0.2125 -1.4576 17 1 8.7678 2.5158 -1.9016 18 6 3.5708 3.6209 0.9712 19 6 4.4247 4.8208 1.3857 20 6 3.8523 3.8835 2.4520 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.7184 1.7118 -2.1129 27 1 0.3437 2.1979 -1.0920 28 1 1.7930 3.2269 -1.1814 29 1 3.2717 1.4517 2.3528 30 1 1.8501 1.9945 3.2767 31 1 1.8220 0.4226 2.4424 32 1 5.9528 1.8731 -2.9159 33 1 2.5633 3.8219 0.6071 34 1 5.4958 4.7676 1.1907 35 1 3.9789 5.8112 1.2946 36 1 3.0301 4.2577 3.0620 37 1 4.5466 3.2132 2.9589 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706797056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:34 Heat of formation + Delta-G solvation = -56.308634 kcal Electronic energy + Delta-G solvation = -19375.734766 eV Core-core repulsion = 16540.353120 eV Total energy + Delta-G solvation = -2835.381646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.37884 -38.53478 -37.79416 -34.87769 -34.38148 -32.80085 -30.70879 -27.50062 -27.03746 -25.92240 -23.30470 -22.85603 -22.11530 -20.47887 -18.84756 -17.77677 -17.21146 -16.76449 -16.42858 -15.91412 -15.64135 -15.48544 -14.92678 -14.47737 -14.26845 -13.63807 -13.44472 -13.38763 -13.06324 -12.88510 -12.83463 -12.74282 -12.57697 -12.33557 -12.17568 -12.07902 -11.80834 -11.69320 -11.52741 -11.25357 -10.74659 -10.55485 -9.59187 -8.94569 -8.21350 -5.99613 1.32453 1.39925 1.47642 2.19120 2.37837 2.81854 3.10698 3.14347 3.40989 3.84424 3.97695 4.06257 4.26438 4.37621 4.46606 4.53135 4.54504 4.60289 4.67547 4.79184 4.83405 4.90394 4.96110 4.99838 5.07290 5.11122 5.14094 5.34632 5.39214 5.46241 5.47691 5.51419 6.10550 6.26986 7.03330 7.20754 7.70846 8.35347 8.87055 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.011095 C = 0.008875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.709493 B = 2522.997100 C = 3154.310477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C 0.112 3.888 4 C -0.123 4.123 5 O -0.363 6.363 6 C 0.025 3.975 7 C 0.451 3.549 8 O -0.590 6.590 9 N -0.432 5.432 10 C -0.358 4.358 11 H 0.076 0.924 12 C 0.022 3.978 13 N -0.869 5.869 14 Si 0.968 3.032 15 H -0.259 1.259 16 H -0.295 1.295 17 H -0.272 1.272 18 C 0.065 3.935 19 C -0.187 4.187 20 C -0.172 4.172 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.024 0.976 30 H 0.114 0.886 31 H 0.043 0.957 32 H 0.259 0.741 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.645 2.174 7.206 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.069 3.931 4 C -0.181 4.181 5 O -0.282 6.282 6 C -0.071 4.071 7 C 0.240 3.760 8 O -0.472 6.472 9 N -0.152 5.152 10 C -0.485 4.485 11 H 0.093 0.907 12 C -0.185 4.185 13 N -0.505 5.505 14 Si 0.793 3.207 15 H -0.183 1.183 16 H -0.222 1.222 17 H -0.197 1.197 18 C -0.040 4.040 19 C -0.224 4.224 20 C -0.211 4.211 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.042 0.958 30 H 0.132 0.868 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.144 0.856 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.467 1.783 6.768 11.774 hybrid contribution 1.617 -0.586 -0.468 1.782 sum -7.851 1.198 6.301 10.137 Atomic orbital electron populations 1.21717 0.92136 1.02448 1.03010 1.21799 0.98508 0.94490 1.01997 1.21577 0.89793 0.94534 0.87183 1.21685 1.02276 0.99517 0.94578 1.87880 1.73715 1.53472 1.13100 1.22926 0.97994 0.98083 0.88069 1.21261 0.90134 0.82505 0.82097 1.90473 1.72871 1.37364 1.46454 1.43024 1.05043 1.14102 1.53004 1.19146 0.81935 1.49619 0.97818 0.90683 1.26048 1.02508 0.95353 0.94558 1.69937 1.37799 1.44417 0.98307 0.85283 0.79240 0.77350 0.78778 1.18265 1.22179 1.19723 1.22049 0.96638 0.89899 0.95400 1.23218 1.00006 0.95068 1.04149 1.23256 1.03283 1.02502 0.92029 0.91548 0.91460 0.91381 0.92755 0.92466 0.92693 0.88038 0.92859 0.95777 0.86810 0.93814 0.93164 0.85580 0.90335 0.87022 0.86172 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.32 71.98 0.67 -2.80 16 2 C -0.13 -4.61 4.41 30.60 0.14 -4.48 16 3 C 0.11 4.42 0.39 -11.54 0.00 4.41 16 4 C -0.12 -4.46 8.18 71.98 0.59 -3.87 16 5 O -0.36 -12.31 7.00 -148.98 -1.04 -13.35 16 6 C 0.03 0.78 8.44 113.37 0.96 1.74 16 7 C 0.45 23.43 4.76 87.65 0.42 23.85 16 8 O -0.59 -36.31 13.76 -3.09 -0.04 -36.35 16 9 N -0.43 -22.09 2.37 -613.12 -1.45 -23.54 16 10 C -0.36 -20.13 7.87 84.04 0.66 -19.46 16 11 H 0.08 4.12 7.32 -2.91 -0.02 4.10 16 12 C 0.02 1.25 4.39 84.93 0.37 1.62 16 13 N -0.87 -53.57 11.74 21.66 0.25 -53.32 16 14 Si 0.97 46.57 29.59 68.60 2.03 48.60 16 15 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 18 C 0.06 2.63 4.10 44.99 0.18 2.82 16 19 C -0.19 -6.76 9.81 30.62 0.30 -6.46 16 20 C -0.17 -5.66 8.10 30.62 0.25 -5.41 16 21 H 0.07 1.57 6.34 -2.39 -0.02 1.56 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.07 1.60 7.82 -2.39 -0.02 1.58 16 24 H 0.05 2.20 7.68 -2.39 -0.02 2.18 16 25 H 0.06 2.06 6.29 -2.38 -0.01 2.04 16 26 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.10 2.83 6.35 -2.39 -0.02 2.81 16 28 H 0.05 2.01 6.99 -2.38 -0.02 1.99 16 29 H 0.02 0.90 5.43 -2.39 -0.01 0.89 16 30 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 31 H 0.04 1.26 6.31 -2.39 -0.02 1.25 16 32 H 0.26 15.34 8.32 -92.71 -0.77 14.57 16 33 H 0.13 4.88 5.09 -2.39 -0.01 4.86 16 34 H 0.08 3.25 6.76 -2.39 -0.02 3.23 16 35 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 37 H 0.07 2.61 7.98 -2.39 -0.02 2.59 16 Total: -1.00 -71.72 284.94 5.33 -66.38 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 1.06 Total: 19.61 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 4.53 Total: -8.04 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -1.20 Total: -76.86 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -1.09 Total: -49.70 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -71.72 5.33 -66.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706797056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.075 kcal (2) G-P(sol) polarization free energy of solvation -71.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds