Wall clock time and date at job start Mon Mar 30 2020 04:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46616 * 2 1 4 4 C 1.53001 * 109.46640 * 184.99571 * 3 2 1 5 5 O 1.42900 * 109.47344 * 65.00155 * 3 2 1 6 6 C 1.42904 * 114.00272 * 59.99417 * 5 3 2 7 7 C 1.50697 * 109.47468 * 305.00030 * 3 2 1 8 8 O 1.21282 * 120.00280 * 125.48566 * 7 3 2 9 9 N 1.34786 * 119.99611 * 305.48267 * 7 3 2 10 10 C 1.37094 * 120.00075 * 185.46129 * 9 7 3 11 11 H 1.07991 * 120.00482 * 220.14531 * 10 9 7 12 12 C 1.38951 * 119.99833 * 40.14393 * 10 9 7 13 13 N 1.31416 * 119.99921 * 17.87469 * 12 10 9 14 14 Si 1.86797 * 120.00321 * 197.86967 * 12 10 9 15 15 H 1.48496 * 109.47103 * 60.00312 * 14 12 10 16 16 H 1.48504 * 109.47358 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47079 * 300.00390 * 14 12 10 18 18 C 1.46497 * 119.99847 * 5.46804 * 9 7 3 19 19 C 1.53002 * 117.49641 * 185.35170 * 18 9 7 20 20 C 1.53000 * 60.00166 * 252.50880 * 19 18 9 21 21 H 1.08998 * 109.47418 * 60.00251 * 1 2 3 22 22 H 1.09004 * 109.47131 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47403 * 299.99584 * 1 2 3 24 24 H 1.08994 * 109.47314 * 239.99671 * 2 1 3 25 25 H 1.09000 * 109.46741 * 119.99449 * 2 1 3 26 26 H 1.09002 * 109.47078 * 189.96259 * 4 3 2 27 27 H 1.09005 * 109.46780 * 69.97195 * 4 3 2 28 28 H 1.08996 * 109.47606 * 309.96745 * 4 3 2 29 29 H 1.09000 * 109.46732 * 60.00164 * 6 5 3 30 30 H 1.08996 * 109.46918 * 180.02562 * 6 5 3 31 31 H 1.09002 * 109.46930 * 300.00449 * 6 5 3 32 32 H 0.96999 * 120.00189 * 184.96230 * 13 12 10 33 33 H 1.09004 * 115.55476 * 331.05762 * 18 9 7 34 34 H 1.08998 * 117.50133 * 359.97438 * 19 18 9 35 35 H 1.09005 * 117.49762 * 145.01735 * 19 18 9 36 36 H 1.09000 * 117.49880 * 252.51306 * 20 19 18 37 37 H 1.09002 * 117.49729 * 107.48595 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5648 1.4444 -0.1256 5 8 1.6619 2.0814 1.2210 6 6 2.1823 1.4502 2.3927 7 6 1.4390 2.1878 -1.1638 8 8 0.8381 3.2243 -0.9751 9 7 1.5694 1.7025 -2.4145 10 6 1.1217 2.4342 -3.4839 11 1 0.6196 1.9414 -4.3032 12 6 1.3139 3.8100 -3.5136 13 7 2.2068 4.3659 -2.7256 14 14 0.3035 4.8695 -4.6736 15 1 -1.1387 4.7157 -4.3549 16 1 0.6972 6.2925 -4.5140 17 1 0.5492 4.4426 -6.0746 18 6 2.1894 0.3929 -2.6310 19 6 2.4225 -0.0477 -4.0775 20 6 1.3210 -0.7070 -3.2452 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9427 2.4514 0.0510 27 1 3.8471 1.1210 -1.1276 28 1 3.9908 0.7622 0.6100 29 1 3.2715 1.4517 2.3528 30 1 1.8500 1.9945 3.2766 31 1 1.8219 0.4227 2.4423 32 1 2.2912 5.3316 -2.6936 33 1 2.9290 0.0942 -1.8881 34 1 2.1143 0.6365 -4.8680 35 1 3.3159 -0.6363 -4.2866 36 1 1.4896 -1.7292 -2.9065 37 1 0.2884 -0.4562 -3.4880 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706797057.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:36 Heat of formation + Delta-G solvation = -23.096051 kcal Electronic energy + Delta-G solvation = -19329.597614 eV Core-core repulsion = 16495.656174 eV Total energy + Delta-G solvation = -2833.941440 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.73277 -37.34641 -35.85184 -33.05593 -32.64374 -30.68508 -29.57908 -26.68610 -25.08440 -23.27928 -22.25896 -21.70585 -20.28071 -19.42107 -16.54055 -16.11726 -15.40366 -15.09024 -14.69547 -14.56451 -14.03709 -13.72969 -13.36883 -12.97010 -12.72982 -12.47249 -11.96685 -11.85179 -11.48459 -11.40589 -10.98499 -10.95159 -10.80776 -10.74996 -10.56415 -10.41954 -10.33764 -10.13116 -9.87655 -9.44717 -8.99159 -8.65674 -7.83101 -7.01212 -6.04639 -3.81270 3.34407 3.42177 3.45137 4.04759 4.16649 4.43537 4.75664 4.98087 5.18425 5.27449 5.46805 5.52526 5.55039 5.62559 5.68816 5.75789 5.80707 5.89888 5.90970 5.99305 6.09614 6.20917 6.25809 6.29866 6.35346 6.46274 6.60932 6.70694 6.75396 6.86085 6.92319 7.62089 7.74999 8.30516 9.09004 9.24732 9.69477 10.35659 11.02269 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023480 B = 0.011139 C = 0.008974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.207972 B = 2513.169340 C = 3119.529042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.163 4.163 3 C 0.102 3.898 4 C -0.176 4.176 5 O -0.351 6.351 6 C 0.024 3.976 7 C 0.507 3.493 8 O -0.513 6.513 9 N -0.426 5.426 10 C -0.342 4.342 11 H 0.079 0.921 12 C 0.068 3.932 13 N -0.831 5.831 14 Si 0.909 3.091 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.278 1.278 18 C 0.064 3.936 19 C -0.179 4.179 20 C -0.207 4.207 21 H 0.065 0.935 22 H 0.046 0.954 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.353 -10.259 4.143 11.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.200 4.200 3 C 0.059 3.941 4 C -0.233 4.233 5 O -0.269 6.269 6 C -0.073 4.073 7 C 0.293 3.707 8 O -0.387 6.387 9 N -0.149 5.149 10 C -0.468 4.468 11 H 0.097 0.903 12 C -0.142 4.142 13 N -0.465 5.465 14 Si 0.736 3.264 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.204 1.204 18 C -0.042 4.042 19 C -0.217 4.217 20 C -0.246 4.246 21 H 0.084 0.916 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.112 0.888 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.046 -9.317 4.280 10.455 hybrid contribution -0.116 0.248 -0.408 0.491 sum 1.929 -9.069 3.872 10.048 Atomic orbital electron populations 1.21639 0.94978 1.00472 1.03019 1.22584 0.97935 0.96342 1.03136 1.21524 0.93969 0.92076 0.86571 1.22474 0.95270 1.02965 1.02588 1.88118 1.73519 1.52836 1.12425 1.22743 0.98038 0.97652 0.88844 1.18971 0.83319 0.86368 0.82064 1.90525 1.41722 1.23381 1.83106 1.42588 1.53571 1.14285 1.04409 1.18816 1.38044 0.89835 1.00113 0.90341 1.25143 0.94433 0.97902 0.96721 1.69854 1.28513 1.11276 1.36846 0.86332 0.80960 0.79198 0.79916 1.20076 1.21224 1.20409 1.22123 0.98553 0.87503 0.96014 1.23151 0.99198 1.03156 0.96174 1.23352 0.97506 0.97019 1.06740 0.91634 0.93484 0.92789 0.88787 0.92234 0.91175 0.90423 0.92909 0.94354 0.90262 0.94297 0.92477 0.86647 0.87471 0.89834 0.89802 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.49 37.16 0.35 -2.16 16 2 C -0.16 -2.74 4.26 -26.73 -0.11 -2.86 16 3 C 0.10 2.12 0.55 -91.77 -0.05 2.07 16 4 C -0.18 -3.24 7.59 37.16 0.28 -2.96 16 5 O -0.35 -7.51 9.42 -55.08 -0.52 -8.03 16 6 C 0.02 0.37 10.23 101.05 1.03 1.40 16 7 C 0.51 13.24 4.21 -10.98 -0.05 13.19 16 8 O -0.51 -15.97 14.18 -14.30 -0.20 -16.18 16 9 N -0.43 -10.60 2.87 -107.73 -0.31 -10.90 16 10 C -0.34 -9.33 8.03 -14.93 -0.12 -9.45 16 11 H 0.08 2.06 7.14 -52.49 -0.37 1.68 16 12 C 0.07 1.94 4.40 -17.47 -0.08 1.87 16 13 N -0.83 -25.02 11.50 55.50 0.64 -24.38 16 14 Si 0.91 22.24 29.59 -169.99 -5.03 17.21 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 18 C 0.06 1.25 3.68 -67.93 -0.25 1.00 16 19 C -0.18 -3.15 9.79 -26.73 -0.26 -3.41 16 20 C -0.21 -3.45 9.68 -26.73 -0.26 -3.71 16 21 H 0.06 1.35 7.07 -51.93 -0.37 0.98 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.97 7.82 -51.93 -0.41 0.56 16 24 H 0.09 1.50 3.74 -51.93 -0.19 1.31 16 25 H 0.06 0.85 6.29 -51.93 -0.33 0.52 16 26 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 27 H 0.08 1.43 5.33 -51.93 -0.28 1.16 16 28 H 0.05 0.77 7.08 -51.93 -0.37 0.40 16 29 H 0.04 0.53 6.65 -51.93 -0.35 0.18 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.04 0.52 6.31 -51.93 -0.33 0.19 16 32 H 0.26 7.75 8.32 -40.82 -0.34 7.41 16 33 H 0.12 2.03 3.66 -51.93 -0.19 1.84 16 34 H 0.11 2.10 6.69 -51.93 -0.35 1.76 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 285.72 15.07 4.31 4.31 Total: -1.00 -33.60 285.72 -5.82 -39.43 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.20 Total: 3.59 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 0.49 Total: -5.03 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.33 Total: -35.29 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.72 Total: -24.20 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.60 -5.82 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706797057.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.329 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds