Wall clock time and date at job start Mon Mar 30 2020 04:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46616 * 2 1 4 4 C 1.53001 * 109.46640 * 184.99571 * 3 2 1 5 5 O 1.42900 * 109.47344 * 65.00155 * 3 2 1 6 6 C 1.42904 * 114.00272 * 59.99417 * 5 3 2 7 7 C 1.50697 * 109.47468 * 305.00030 * 3 2 1 8 8 O 1.21282 * 120.00280 * 125.48566 * 7 3 2 9 9 N 1.34786 * 119.99611 * 305.48267 * 7 3 2 10 10 C 1.37094 * 120.00075 * 185.46129 * 9 7 3 11 11 H 1.07991 * 120.00482 * 220.14531 * 10 9 7 12 12 C 1.38951 * 119.99833 * 40.14393 * 10 9 7 13 13 N 1.31416 * 119.99921 * 17.87469 * 12 10 9 14 14 Si 1.86797 * 120.00321 * 197.86967 * 12 10 9 15 15 H 1.48496 * 109.47103 * 60.00312 * 14 12 10 16 16 H 1.48504 * 109.47358 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47079 * 300.00390 * 14 12 10 18 18 C 1.46497 * 119.99847 * 5.46804 * 9 7 3 19 19 C 1.53002 * 117.49641 * 185.35170 * 18 9 7 20 20 C 1.53000 * 60.00166 * 252.50880 * 19 18 9 21 21 H 1.08998 * 109.47418 * 60.00251 * 1 2 3 22 22 H 1.09004 * 109.47131 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47403 * 299.99584 * 1 2 3 24 24 H 1.08994 * 109.47314 * 239.99671 * 2 1 3 25 25 H 1.09000 * 109.46741 * 119.99449 * 2 1 3 26 26 H 1.09002 * 109.47078 * 189.96259 * 4 3 2 27 27 H 1.09005 * 109.46780 * 69.97195 * 4 3 2 28 28 H 1.08996 * 109.47606 * 309.96745 * 4 3 2 29 29 H 1.09000 * 109.46732 * 60.00164 * 6 5 3 30 30 H 1.08996 * 109.46918 * 180.02562 * 6 5 3 31 31 H 1.09002 * 109.46930 * 300.00449 * 6 5 3 32 32 H 0.96999 * 120.00189 * 184.96230 * 13 12 10 33 33 H 1.09004 * 115.55476 * 331.05762 * 18 9 7 34 34 H 1.08998 * 117.50133 * 359.97438 * 19 18 9 35 35 H 1.09005 * 117.49762 * 145.01735 * 19 18 9 36 36 H 1.09000 * 117.49880 * 252.51306 * 20 19 18 37 37 H 1.09002 * 117.49729 * 107.48595 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5648 1.4444 -0.1256 5 8 1.6619 2.0814 1.2210 6 6 2.1823 1.4502 2.3927 7 6 1.4390 2.1878 -1.1638 8 8 0.8381 3.2243 -0.9751 9 7 1.5694 1.7025 -2.4145 10 6 1.1217 2.4342 -3.4839 11 1 0.6196 1.9414 -4.3032 12 6 1.3139 3.8100 -3.5136 13 7 2.2068 4.3659 -2.7256 14 14 0.3035 4.8695 -4.6736 15 1 -1.1387 4.7157 -4.3549 16 1 0.6972 6.2925 -4.5140 17 1 0.5492 4.4426 -6.0746 18 6 2.1894 0.3929 -2.6310 19 6 2.4225 -0.0477 -4.0775 20 6 1.3210 -0.7070 -3.2452 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9427 2.4514 0.0510 27 1 3.8471 1.1210 -1.1276 28 1 3.9908 0.7622 0.6100 29 1 3.2715 1.4517 2.3528 30 1 1.8500 1.9945 3.2766 31 1 1.8219 0.4227 2.4423 32 1 2.2912 5.3316 -2.6936 33 1 2.9290 0.0942 -1.8881 34 1 2.1143 0.6365 -4.8680 35 1 3.3159 -0.6363 -4.2866 36 1 1.4896 -1.7292 -2.9065 37 1 0.2884 -0.4562 -3.4880 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706797057.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:36 Heat of formation + Delta-G solvation = -45.989081 kcal Electronic energy + Delta-G solvation = -19330.590330 eV Core-core repulsion = 16495.656174 eV Total energy + Delta-G solvation = -2834.934156 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.38606 -38.91086 -37.64586 -34.81178 -34.37805 -32.56868 -31.06757 -27.97846 -27.06152 -24.75547 -23.85240 -23.07774 -21.96754 -21.09619 -18.38925 -17.83369 -16.98530 -16.71758 -16.41046 -16.08776 -15.60240 -15.52324 -15.02334 -14.46128 -14.11040 -14.02542 -13.54637 -13.46111 -13.26706 -12.82178 -12.79831 -12.67178 -12.56051 -12.22976 -12.16731 -12.04898 -11.93210 -11.78483 -11.42806 -10.91819 -10.65550 -10.38683 -9.76168 -8.99061 -8.16759 -5.95374 1.34892 1.43470 1.47170 2.25431 2.42257 2.67705 3.11866 3.39565 3.42720 3.75854 3.91598 4.09326 4.13970 4.27276 4.34689 4.43980 4.48319 4.56880 4.58342 4.68468 4.82656 4.85152 4.93299 4.95865 5.01948 5.10340 5.23253 5.26225 5.32155 5.45382 5.47471 5.52509 6.15208 6.40800 7.03986 7.28541 7.71408 8.41155 8.88459 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.023480 B = 0.011139 C = 0.008974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.207972 B = 2513.169340 C = 3119.529042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.154 4.154 3 C 0.104 3.896 4 C -0.169 4.169 5 O -0.396 6.396 6 C 0.017 3.983 7 C 0.491 3.509 8 O -0.584 6.584 9 N -0.438 5.438 10 C -0.347 4.347 11 H 0.082 0.918 12 C 0.014 3.986 13 N -0.869 5.869 14 Si 0.964 3.036 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.253 1.253 18 C 0.033 3.967 19 C -0.176 4.176 20 C -0.179 4.179 21 H 0.023 0.977 22 H 0.083 0.917 23 H 0.041 0.959 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.256 0.744 33 H 0.142 0.858 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.195 -13.655 4.492 14.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.191 4.191 3 C 0.061 3.939 4 C -0.226 4.226 5 O -0.315 6.315 6 C -0.079 4.079 7 C 0.279 3.721 8 O -0.464 6.464 9 N -0.159 5.159 10 C -0.475 4.475 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.505 5.505 14 Si 0.789 3.211 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.178 1.178 18 C -0.071 4.071 19 C -0.214 4.214 20 C -0.218 4.218 21 H 0.042 0.958 22 H 0.102 0.898 23 H 0.060 0.940 24 H 0.126 0.874 25 H 0.117 0.883 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.119 0.881 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.159 0.841 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.147 0.853 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.907 -12.778 4.592 13.885 hybrid contribution -0.415 1.215 -0.483 1.371 sum 2.492 -11.563 4.109 12.522 Atomic orbital electron populations 1.21592 0.95793 1.01911 1.00390 1.22572 0.97108 0.93776 1.05638 1.21417 0.94717 0.93190 0.84536 1.22429 0.93820 1.02376 1.03986 1.88064 1.74620 1.54785 1.14013 1.23041 0.99031 0.98878 0.86977 1.20054 0.82344 0.85907 0.83749 1.90461 1.44825 1.26600 1.84519 1.42763 1.53513 1.15886 1.03721 1.19101 1.37432 0.90356 1.00575 0.90048 1.25978 0.95456 0.99430 0.98279 1.69973 1.30542 1.10619 1.39408 0.85466 0.78746 0.77455 0.79407 1.21012 1.21592 1.17764 1.22457 1.00655 0.85795 0.98208 1.23225 1.01146 1.02948 0.94057 1.23379 0.95987 0.98022 1.04390 0.95786 0.89817 0.93996 0.87421 0.88287 0.94278 0.90564 0.88117 0.92796 0.89067 0.91794 0.93474 0.84143 0.90248 0.86125 0.85271 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 9.49 71.98 0.68 -3.92 16 2 C -0.15 -4.65 4.26 30.60 0.13 -4.52 16 3 C 0.10 4.22 0.55 -11.54 -0.01 4.21 16 4 C -0.17 -5.93 7.59 71.98 0.55 -5.38 16 5 O -0.40 -16.78 9.42 -130.00 -1.22 -18.01 16 6 C 0.02 0.46 10.23 113.37 1.16 1.62 16 7 C 0.49 26.30 4.21 87.65 0.37 26.67 16 8 O -0.58 -38.40 14.18 15.94 0.23 -38.17 16 9 N -0.44 -22.02 2.87 -613.13 -1.76 -23.78 16 10 C -0.35 -19.47 8.03 84.04 0.67 -18.80 16 11 H 0.08 4.37 7.14 -2.91 -0.02 4.34 16 12 C 0.01 0.83 4.40 84.93 0.37 1.21 16 13 N -0.87 -54.92 11.50 21.66 0.25 -54.67 16 14 Si 0.96 47.25 29.59 68.60 2.03 49.28 16 15 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 16 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 17 H -0.25 -11.25 7.11 99.48 0.71 -10.54 16 18 C 0.03 1.23 3.68 44.99 0.17 1.39 16 19 C -0.18 -5.74 9.79 30.60 0.30 -5.44 16 20 C -0.18 -5.36 9.68 30.60 0.30 -5.07 16 21 H 0.02 0.97 7.07 -2.39 -0.02 0.95 16 22 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.04 1.45 7.82 -2.39 -0.02 1.43 16 24 H 0.11 2.94 3.74 -2.39 -0.01 2.93 16 25 H 0.10 2.24 6.29 -2.39 -0.02 2.23 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.08 2.66 5.33 -2.38 -0.01 2.65 16 28 H 0.10 2.51 7.08 -2.39 -0.02 2.49 16 29 H 0.05 1.31 6.65 -2.39 -0.02 1.29 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 1.43 6.31 -2.39 -0.02 1.41 16 32 H 0.26 15.86 8.32 -92.71 -0.77 15.09 16 33 H 0.14 4.44 3.66 -2.38 -0.01 4.43 16 34 H 0.08 3.05 6.69 -2.39 -0.02 3.04 16 35 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 36 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -79.75 285.72 5.28 -74.47 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 1.07 Total: 18.91 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.69 Total: -8.03 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -1.51 Total: -78.45 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -1.00 Total: -56.18 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -79.75 5.28 -74.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706797057.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.476 kcal (2) G-P(sol) polarization free energy of solvation -79.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds