Wall clock time and date at job start Mon Mar 30 2020 03:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00293 * 2 1 4 4 H 1.48505 * 109.46947 * 274.63602 * 3 2 1 5 5 H 1.48504 * 109.47050 * 34.63576 * 3 2 1 6 6 H 1.48501 * 109.47208 * 154.63777 * 3 2 1 7 7 C 1.37883 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99988 * 4.76667 * 7 2 1 9 9 C 1.50701 * 120.00100 * 184.75899 * 7 2 1 10 10 C 1.53003 * 115.54490 * 84.63361 * 9 7 2 11 11 N 1.46889 * 109.47488 * 39.92684 * 10 9 7 12 12 C 1.46902 * 111.00370 * 174.71942 * 11 10 9 13 13 H 1.08999 * 109.54090 * 39.09695 * 12 11 10 14 14 C 1.53177 * 109.54239 * 278.92163 * 12 11 10 15 15 C 1.53100 * 109.15991 * 183.15117 * 14 12 11 16 16 O 1.42906 * 109.41375 * 57.60885 * 15 14 12 17 17 C 1.42898 * 114.09471 * 298.83796 * 16 15 14 18 18 C 1.53089 * 109.41505 * 61.16441 * 17 16 15 19 19 H 1.08993 * 109.52260 * 62.29500 * 18 17 16 20 20 O 1.42910 * 109.52093 * 182.48208 * 18 17 16 21 21 C 1.52994 * 117.51975 * 230.33235 * 9 7 2 22 22 C 1.52996 * 117.49805 * 298.96723 * 9 7 2 23 23 H 0.97000 * 120.00015 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47116 * 279.92733 * 10 9 7 25 25 H 1.09003 * 109.46913 * 159.93266 * 10 9 7 26 26 H 1.00907 * 111.00497 * 298.67380 * 11 10 9 27 27 H 1.09001 * 109.52283 * 303.05280 * 14 12 11 28 28 H 1.08999 * 109.52442 * 63.24279 * 14 12 11 29 29 H 1.09000 * 109.47691 * 177.58977 * 15 14 12 30 30 H 1.08997 * 109.47808 * 297.61464 * 15 14 12 31 31 H 1.09003 * 109.47859 * 181.14566 * 17 16 15 32 32 H 1.08998 * 109.48400 * 301.17612 * 17 16 15 33 33 H 0.96697 * 113.99637 * 299.68250 * 20 18 17 34 34 H 1.08997 * 117.49928 * 214.97179 * 21 9 7 35 35 H 1.09000 * 117.49959 * 359.97438 * 21 9 7 36 36 H 1.08997 * 117.50196 * 359.96859 * 22 9 7 37 37 H 1.08997 * 117.49879 * 144.99805 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3987 2.1029 -1.3956 5 1 1.4990 2.6224 0.7958 6 1 3.5923 1.4137 0.5997 7 6 2.0045 -1.1941 0.0005 8 1 1.4673 -2.1278 -0.0768 9 6 3.5076 -1.1964 0.1088 10 6 4.0667 -1.1248 1.5312 11 7 3.2525 -1.9639 2.4203 12 6 3.8325 -2.0196 3.7688 13 1 4.2227 -1.0383 4.0387 14 6 4.9677 -3.0477 3.7962 15 6 5.5133 -3.1559 5.2226 16 8 4.4537 -3.5183 6.1103 17 6 3.3858 -2.5702 6.1619 18 6 2.7547 -2.4385 4.7734 19 1 2.3302 -3.3967 4.4738 20 8 1.7245 -1.4487 4.8090 21 6 4.2890 -2.0200 -0.9168 22 6 4.2965 -0.4920 -0.9967 23 1 -0.4850 0.8400 0.0004 24 1 4.0399 -0.0926 1.8806 25 1 5.0962 -1.4831 1.5354 26 1 2.2978 -1.6386 2.4505 27 1 4.5879 -4.0183 3.4770 28 1 5.7646 -2.7285 3.1246 29 1 6.2926 -3.9172 5.2569 30 1 5.9297 -2.1954 5.5263 31 1 2.6325 -2.9095 6.8729 32 1 3.7742 -1.6021 6.4780 33 1 1.0073 -1.6496 5.4256 34 1 5.2014 -2.5107 -0.5783 35 1 3.7159 -2.5608 -1.6699 36 1 3.7285 -0.0274 -1.8026 37 1 5.2140 0.0223 -0.7108 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706957493.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:57 Heat of formation + Delta-G solvation = -69.512023 kcal Electronic energy + Delta-G solvation = -18301.953482 eV Core-core repulsion = 15465.999294 eV Total energy + Delta-G solvation = -2835.954188 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.64475 -37.23494 -36.37759 -34.56311 -32.02177 -30.87274 -29.72734 -26.07974 -25.01734 -23.29231 -22.63956 -21.53278 -19.97242 -18.85261 -17.32645 -16.37115 -16.15904 -16.07179 -15.14079 -14.84203 -14.58340 -14.20138 -13.62244 -13.34839 -13.18254 -12.66880 -12.49904 -12.22665 -11.98988 -11.91967 -11.30774 -11.04436 -10.91468 -10.60088 -10.38970 -10.36265 -10.12209 -9.95620 -9.47279 -9.27738 -8.97863 -8.55994 -8.34271 -7.52276 -6.04278 -4.04608 3.32356 3.41964 3.47403 3.70048 4.38615 4.48142 4.57740 4.78426 4.88409 5.05847 5.17826 5.21310 5.26870 5.30685 5.53966 5.64519 5.69221 5.83478 5.90773 5.97726 6.11889 6.16560 6.29430 6.39999 6.43526 6.55809 6.64707 6.81177 7.05073 7.10157 7.20873 7.75812 7.81708 7.94329 8.37429 8.62945 9.03099 9.59802 11.07413 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027174 B = 0.007792 C = 0.006735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.164926 B = 3592.757840 C = 4156.364332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.076 3.924 3 Si 0.874 3.126 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.257 1.257 7 C -0.475 4.475 8 H 0.079 0.921 9 C 0.011 3.989 10 C 0.098 3.902 11 N -0.664 5.664 12 C 0.091 3.909 13 H 0.038 0.962 14 C -0.143 4.143 15 C 0.058 3.942 16 O -0.380 6.380 17 C 0.034 3.966 18 C 0.071 3.929 19 H 0.074 0.926 20 O -0.554 6.554 21 C -0.176 4.176 22 C -0.207 4.207 23 H 0.263 0.737 24 H 0.019 0.981 25 H 0.045 0.955 26 H 0.369 0.631 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.377 0.623 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.791 -3.798 10.805 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.181 1.181 7 C -0.513 4.513 8 H 0.097 0.903 9 C 0.009 3.991 10 C -0.031 4.031 11 N -0.299 5.299 12 C -0.020 4.020 13 H 0.056 0.944 14 C -0.181 4.181 15 C -0.019 4.019 16 O -0.298 6.298 17 C -0.044 4.044 18 C 0.011 3.989 19 H 0.092 0.908 20 O -0.359 6.359 21 C -0.213 4.213 22 C -0.245 4.245 23 H 0.072 0.928 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.193 0.807 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.224 0.776 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.277 -4.143 10.255 14.435 hybrid contribution -0.129 1.924 0.451 1.981 sum 9.148 -2.218 10.705 14.255 Atomic orbital electron populations 1.69903 1.06246 1.26825 1.50511 1.24969 0.94535 0.98804 0.94289 0.86933 0.80917 0.83829 0.78060 1.20804 1.22339 1.18084 1.20242 0.86773 0.94352 1.49928 0.90263 1.19361 0.94487 0.98751 0.86452 1.21593 0.94649 0.93174 0.93718 1.60431 1.07766 1.56408 1.05318 1.21461 0.93163 0.96962 0.90384 0.94409 1.22263 0.98343 1.01101 0.96440 1.22689 0.89474 1.00548 0.89162 1.87906 1.30854 1.46819 1.64258 1.23322 0.90316 0.93356 0.97395 1.22606 0.89085 0.92563 0.94598 0.90848 1.86614 1.34762 1.47743 1.66802 1.22791 1.01309 0.92469 1.04755 1.22980 1.01821 0.95038 1.04670 0.92769 0.96329 0.93645 0.80713 0.89941 0.90510 0.88632 0.93380 0.88834 0.92691 0.77597 0.91213 0.89854 0.89752 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 21.99 25.20 -169.99 -4.28 17.70 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.26 -6.15 5.23 56.52 0.30 -5.86 16 7 C -0.48 -13.15 8.07 -34.44 -0.28 -13.43 16 8 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.01 0.25 1.19 -155.66 -0.18 0.07 16 10 C 0.10 2.09 5.41 -3.83 -0.02 2.07 16 11 N -0.66 -13.61 6.06 -106.54 -0.65 -14.26 16 12 C 0.09 1.52 2.27 -67.53 -0.15 1.36 16 13 H 0.04 0.66 7.92 -51.93 -0.41 0.25 16 14 C -0.14 -1.99 5.56 -26.59 -0.15 -2.14 16 15 C 0.06 0.68 6.84 37.21 0.25 0.94 16 16 O -0.38 -5.00 10.77 -35.23 -0.38 -5.38 16 17 C 0.03 0.41 6.47 37.20 0.24 0.65 16 18 C 0.07 1.05 3.21 -26.59 -0.09 0.96 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 20 O -0.55 -8.57 12.62 -35.23 -0.44 -9.02 16 21 C -0.18 -3.70 9.88 -26.73 -0.26 -3.96 16 22 C -0.21 -4.52 7.35 -26.73 -0.20 -4.72 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.42 6.62 -51.93 -0.34 0.08 16 25 H 0.05 0.87 6.93 -51.93 -0.36 0.51 16 26 H 0.37 8.63 6.82 -39.29 -0.27 8.37 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.08 1.04 7.24 -51.93 -0.38 0.67 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.38 3.92 9.09 45.56 0.41 4.33 16 34 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 35 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 36 H 0.08 1.92 7.15 -51.93 -0.37 1.55 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 291.12 15.07 4.39 4.39 Total: -1.00 -31.10 291.12 -6.71 -37.81 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.18 Total: 11.31 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -0.93 Total: -16.13 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.13 Total: -40.67 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.82 Total: -14.40 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.28 Total: 17.70 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.10 -6.71 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706957493.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.704 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds