Wall clock time and date at job start Mon Mar 30 2020 03:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99840 * 2 1 4 4 H 1.48505 * 109.46979 * 270.00614 * 3 2 1 5 5 H 1.48504 * 109.46927 * 30.00164 * 3 2 1 6 6 H 1.48500 * 109.47158 * 150.00437 * 3 2 1 7 7 C 1.37877 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99658 * 172.99769 * 7 2 1 9 9 C 1.50700 * 120.00028 * 352.99748 * 7 2 1 10 10 C 1.52999 * 115.54538 * 84.90399 * 9 7 2 11 11 N 1.46895 * 109.47488 * 65.16940 * 10 9 7 12 12 C 1.46896 * 111.00456 * 174.68042 * 11 10 9 13 13 H 1.09001 * 109.61327 * 324.77621 * 12 11 10 14 14 C 1.53173 * 109.54634 * 84.99894 * 12 11 10 15 15 C 1.53090 * 109.16389 * 176.84994 * 14 12 11 16 16 O 1.42899 * 109.42725 * 302.38312 * 15 14 12 17 17 C 1.42925 * 114.08188 * 61.15122 * 16 15 14 18 18 C 1.53089 * 109.42419 * 298.85067 * 17 16 15 19 19 H 1.09007 * 109.52300 * 297.70738 * 18 17 16 20 20 O 1.42900 * 109.57456 * 177.54701 * 18 17 16 21 21 C 1.53000 * 117.49765 * 230.57232 * 9 7 2 22 22 C 1.52998 * 117.49986 * 299.23440 * 9 7 2 23 23 H 0.96991 * 120.00461 * 5.03784 * 1 2 3 24 24 H 1.09002 * 109.47611 * 305.16639 * 10 9 7 25 25 H 1.09003 * 109.47023 * 185.16510 * 10 9 7 26 26 H 1.00903 * 110.99838 * 298.63594 * 11 10 9 27 27 H 1.08999 * 109.52349 * 56.94036 * 14 12 11 28 28 H 1.09003 * 109.57409 * 296.78564 * 14 12 11 29 29 H 1.08997 * 109.48340 * 62.37432 * 15 14 12 30 30 H 1.09007 * 109.48200 * 182.39508 * 15 14 12 31 31 H 1.09009 * 109.47721 * 178.86866 * 17 16 15 32 32 H 1.08998 * 109.47903 * 58.83724 * 17 16 15 33 33 H 0.96692 * 114.00084 * 60.28911 * 20 18 17 34 34 H 1.08998 * 117.49651 * 215.00140 * 21 9 7 35 35 H 1.08993 * 117.50066 * 0.02562 * 21 9 7 36 36 H 1.09000 * 117.49836 * 359.97406 * 22 9 7 37 37 H 1.09005 * 117.49581 * 144.97399 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0785 -1.1974 -0.1146 9 6 1.2595 -2.4944 0.1580 10 6 0.6824 -3.0853 -1.1298 11 7 1.7798 -3.4606 -2.0313 12 6 1.2691 -4.1472 -3.2252 13 1 0.4089 -4.7598 -2.9552 14 6 0.8515 -3.1109 -4.2730 15 6 0.3949 -3.8352 -5.5421 16 8 1.4523 -4.6693 -6.0199 17 6 1.8526 -5.6877 -5.1004 18 6 2.3678 -5.0379 -3.8136 19 1 3.2463 -4.4326 -4.0376 20 8 2.7155 -6.0535 -2.8704 21 6 1.7646 -3.4730 1.2201 22 6 0.4634 -2.6997 1.4483 23 1 -0.4850 0.8367 -0.0738 24 1 0.0488 -2.3445 -1.6176 25 1 0.0904 -3.9688 -0.8908 26 1 2.3306 -2.6544 -2.2856 27 1 1.6993 -2.4668 -4.5063 28 1 0.0318 -2.5073 -3.8832 29 1 -0.4779 -4.4480 -5.3168 30 1 0.1368 -3.1020 -6.3063 31 1 2.6449 -6.2891 -5.5464 32 1 0.9988 -6.3247 -4.8693 33 1 3.4073 -6.6552 -3.1774 34 1 1.6857 -4.5379 1.0014 35 1 2.6355 -3.1762 1.8044 36 1 0.4789 -1.8944 2.1827 37 1 -0.4717 -3.2555 1.3796 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706957494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:58 Heat of formation + Delta-G solvation = -96.786408 kcal Electronic energy + Delta-G solvation = -18134.393234 eV Core-core repulsion = 15297.256340 eV Total energy + Delta-G solvation = -2837.136894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.73039 -38.66196 -37.35244 -36.04298 -33.97469 -31.97556 -30.76314 -27.74852 -26.59482 -24.29987 -24.00775 -22.82087 -21.57115 -20.79117 -18.33267 -17.93944 -17.28182 -17.14622 -16.61690 -16.30228 -15.91031 -15.54816 -15.44296 -14.58404 -14.35260 -14.17468 -13.54605 -13.31404 -13.27649 -13.10249 -12.93666 -12.84881 -12.48300 -12.30221 -12.16316 -12.00976 -11.47432 -11.33929 -11.12066 -10.71843 -10.44394 -10.37350 -9.91271 -9.04066 -8.08436 -6.19600 1.39466 1.43072 1.51993 2.42547 2.77522 3.18633 3.20008 3.37288 3.68753 3.80190 3.88572 4.07055 4.19414 4.20900 4.34038 4.41642 4.53598 4.61881 4.69634 4.72165 4.78186 4.88189 4.97546 5.00474 5.05168 5.09844 5.16548 5.27613 5.65394 5.67617 5.79751 6.10976 6.35723 6.48582 6.63275 6.88714 7.02882 7.48151 8.98875 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025355 B = 0.006968 C = 0.006130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.073436 B = 4017.221809 C = 4566.973978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.028 3.972 3 Si 0.946 3.054 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.504 4.504 8 H 0.051 0.949 9 C 0.029 3.971 10 C 0.125 3.875 11 N -0.666 5.666 12 C 0.088 3.912 13 H 0.067 0.933 14 C -0.178 4.178 15 C 0.066 3.934 16 O -0.390 6.390 17 C 0.036 3.964 18 C 0.092 3.908 19 H 0.056 0.944 20 O -0.562 6.562 21 C -0.180 4.180 22 C -0.168 4.168 23 H 0.259 0.741 24 H 0.008 0.992 25 H 0.038 0.962 26 H 0.338 0.662 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.061 0.939 33 H 0.389 0.611 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 -9.437 -10.801 14.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.173 4.173 3 Si 0.773 3.227 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.028 3.972 10 C -0.004 4.004 11 N -0.294 5.294 12 C -0.023 4.023 13 H 0.085 0.915 14 C -0.218 4.218 15 C -0.011 4.011 16 O -0.309 6.309 17 C -0.042 4.042 18 C 0.032 3.968 19 H 0.074 0.926 20 O -0.369 6.369 21 C -0.217 4.217 22 C -0.206 4.206 23 H 0.068 0.932 24 H 0.027 0.973 25 H 0.056 0.944 26 H 0.156 0.844 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.079 0.921 33 H 0.238 0.762 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.754 -9.571 -10.201 14.098 hybrid contribution 0.036 1.641 -0.163 1.649 sum 1.790 -7.930 -10.365 13.173 Atomic orbital electron populations 1.70092 1.07000 1.27160 1.50202 1.25633 0.95484 1.01633 0.94511 0.85737 0.78773 0.79998 0.78229 1.20012 1.21276 1.19659 1.20660 0.92871 0.90147 1.50486 0.93097 1.18885 0.97974 0.93516 0.86783 1.21141 0.91162 0.94829 0.93306 1.60419 1.22794 1.31339 1.14894 1.21676 0.96415 0.94607 0.89574 0.91469 1.22893 1.02437 0.99258 0.97175 1.22643 0.89246 0.93633 0.95561 1.87909 1.54919 1.46032 1.41994 1.23440 1.01189 0.90157 0.89397 1.22321 0.96828 0.89296 0.88337 0.92596 1.86656 1.61301 1.45026 1.43940 1.22813 0.96594 0.96387 1.05895 1.22466 0.93628 1.01321 1.03209 0.93220 0.97335 0.94389 0.84354 0.91229 0.91405 0.92064 0.86991 0.86069 0.92070 0.76189 0.90102 0.91029 0.92386 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.34 12.95 21.45 0.28 -51.07 16 2 C 0.03 1.50 5.39 84.65 0.46 1.96 16 3 Si 0.95 43.15 29.55 68.60 2.03 45.18 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.50 -27.36 8.32 25.60 0.21 -27.15 16 8 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 9 C 0.03 1.46 1.56 -52.93 -0.08 1.38 16 10 C 0.12 5.72 5.38 86.30 0.46 6.19 16 11 N -0.67 -26.67 6.15 -490.96 -3.02 -29.69 16 12 C 0.09 2.84 2.23 45.04 0.10 2.94 16 13 H 0.07 2.28 7.73 -2.39 -0.02 2.26 16 14 C -0.18 -5.17 5.40 30.68 0.17 -5.00 16 15 C 0.07 1.53 6.84 72.01 0.49 2.02 16 16 O -0.39 -9.43 10.77 -148.98 -1.60 -11.03 16 17 C 0.04 0.74 6.47 72.01 0.47 1.21 16 18 C 0.09 2.45 3.31 30.69 0.10 2.56 16 19 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 20 O -0.56 -15.21 13.25 -148.98 -1.97 -17.18 16 21 C -0.18 -8.24 9.96 30.62 0.30 -7.93 16 22 C -0.17 -8.23 9.46 30.62 0.29 -7.94 16 23 H 0.26 14.04 8.32 -92.72 -0.77 13.27 16 24 H 0.01 0.43 7.66 -2.39 -0.02 0.41 16 25 H 0.04 1.69 7.88 -2.39 -0.02 1.67 16 26 H 0.34 14.30 8.02 -89.69 -0.72 13.58 16 27 H 0.07 2.08 8.09 -2.39 -0.02 2.06 16 28 H 0.07 2.17 7.66 -2.39 -0.02 2.15 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.39 6.28 9.09 -74.06 -0.67 5.60 16 34 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 35 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.07 3.20 8.14 -2.38 -0.02 3.18 16 Total: -1.00 -62.51 303.83 -1.65 -64.16 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: -0.33 Total: 29.39 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 2.97 Total: -29.77 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -2.74 Total: -80.76 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -3.58 Total: -28.21 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -62.51 -1.65 -64.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706957494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.623 kcal (2) G-P(sol) polarization free energy of solvation -62.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds