Wall clock time and date at job start Mon Mar 30 2020 03:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.47477 * 111.00075 * 74.02853 * 12 11 10 14 14 C 1.53510 * 87.93434 * 138.70391 * 13 12 11 15 15 C 1.53002 * 114.17242 * 220.33113 * 14 13 12 16 16 C 1.52998 * 109.46641 * 268.83821 * 15 14 13 17 17 C 1.50706 * 109.46889 * 179.97438 * 16 15 14 18 18 O 1.20822 * 120.00174 * 359.97438 * 17 16 15 19 19 O 1.34231 * 119.99829 * 179.97438 * 17 16 15 20 20 C 1.47489 * 110.99919 * 169.99763 * 12 11 10 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 27 27 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 28 28 H 1.09006 * 113.47280 * 253.46465 * 13 12 11 29 29 H 1.08995 * 113.48008 * 23.93226 * 13 12 11 30 30 H 1.09001 * 114.35108 * 87.63208 * 14 13 12 31 31 H 1.09000 * 109.47359 * 28.83256 * 15 14 13 32 32 H 1.09003 * 109.47481 * 148.83549 * 15 14 13 33 33 H 1.09005 * 109.47381 * 299.99399 * 16 15 14 34 34 H 1.08992 * 109.47622 * 60.00103 * 16 15 14 35 35 H 0.96707 * 116.99708 * 179.97438 * 19 17 16 36 36 H 1.09002 * 113.47515 * 336.06433 * 20 12 11 37 37 H 1.08999 * 113.47246 * 106.52749 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4346 -6.1037 0.0005 13 6 3.0651 -6.2593 1.3246 14 6 2.9145 -7.7777 1.1562 15 6 2.4912 -8.5105 2.4309 16 6 3.7363 -8.9573 3.1995 17 6 3.3194 -9.6786 4.4554 18 8 2.1468 -9.8203 4.7097 19 8 4.2509 -10.1636 5.2914 20 6 1.7472 -7.3866 0.2391 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 0.8531 -5.0451 0.8897 27 1 0.8537 -5.0446 -0.8902 28 1 4.1027 -5.9265 1.3533 29 1 2.4682 -5.8516 2.1404 30 1 3.7462 -8.2573 0.6401 31 1 1.8995 -7.8412 3.0553 32 1 1.8943 -9.3836 2.1669 33 1 4.3281 -9.6267 2.5751 34 1 4.3331 -8.0843 3.4635 35 1 3.9351 -10.6183 6.0843 36 1 0.7986 -7.2796 0.7652 37 1 1.6679 -8.0089 -0.6522 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709378686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:26 Heat of formation + Delta-G solvation = -84.037745 kcal Electronic energy + Delta-G solvation = -16682.497623 eV Core-core repulsion = 13845.913553 eV Total energy + Delta-G solvation = -2836.584070 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.64719 -39.98275 -36.50775 -34.68501 -33.44377 -31.75212 -28.84865 -26.26984 -25.87905 -24.12002 -21.97405 -20.90588 -19.93460 -19.75295 -18.32848 -16.79194 -16.50663 -16.24684 -15.70388 -15.03621 -14.77026 -14.40111 -13.94495 -13.73827 -13.35499 -12.64663 -12.35589 -12.30230 -12.08430 -11.82549 -11.48492 -11.41927 -11.27369 -10.94025 -10.81166 -10.66961 -10.52257 -10.40935 -10.24640 -9.64949 -9.29334 -9.03257 -8.64000 -8.32250 -5.97603 -3.99812 1.91543 2.74028 3.35073 3.39079 3.41879 4.20025 4.26142 4.48505 4.52572 4.73072 4.85733 5.10843 5.25904 5.31050 5.37885 5.39922 5.49956 5.62173 5.67793 5.74595 5.79424 5.89340 5.92515 6.17710 6.26775 6.29961 6.52132 6.73383 6.85842 7.17609 7.36570 7.58214 7.70090 7.85127 8.02688 8.46025 9.07154 9.64012 11.13869 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035746 B = 0.003448 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.106864 B = 8119.743976 C = 8454.226856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.103 4.103 11 C 0.021 3.979 12 N -0.473 5.473 13 C 0.003 3.997 14 C -0.118 4.118 15 C -0.100 4.100 16 C -0.112 4.112 17 C 0.477 3.523 18 O -0.516 6.516 19 O -0.520 6.520 20 C 0.001 3.999 21 H 0.261 0.739 22 H 0.015 0.985 23 H 0.013 0.987 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.036 0.964 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.409 0.591 36 H 0.068 0.932 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 -20.372 6.766 22.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.107 4.107 12 N -0.195 5.195 13 C -0.126 4.126 14 C -0.137 4.137 15 C -0.138 4.138 16 C -0.149 4.149 17 C 0.319 3.681 18 O -0.404 6.404 19 O -0.332 6.332 20 C -0.128 4.128 21 H 0.070 0.930 22 H 0.034 0.966 23 H 0.031 0.969 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.267 0.733 36 H 0.086 0.914 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.423 -19.937 5.853 22.064 hybrid contribution -0.413 0.693 1.263 1.498 sum 7.010 -19.244 7.116 21.682 Atomic orbital electron populations 1.69961 1.06068 1.26668 1.50949 1.25034 0.94856 0.99261 0.95374 0.86647 0.79570 0.83102 0.78626 1.20214 1.21305 1.20256 1.21220 0.93014 0.91074 1.50465 0.92739 1.19071 0.94012 0.91415 0.97067 1.21566 0.99079 0.92717 1.00709 1.22824 0.94672 0.92543 1.00693 1.68946 1.21485 1.01770 1.27264 1.23881 1.01675 0.94321 0.92686 1.22804 0.99547 0.95751 0.95620 1.21438 0.95698 1.01230 0.95390 1.21419 1.01117 1.01190 0.91207 1.23717 0.83630 0.75810 0.84918 1.90739 1.19843 1.55247 1.74614 1.84555 1.42766 1.69388 1.36529 1.23822 0.96341 0.93652 0.99023 0.92978 0.96621 0.96853 0.93609 0.92679 0.94541 0.91025 0.89951 0.91185 0.87907 0.90706 0.90639 0.87487 0.87305 0.73255 0.91404 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.10 -2.20 5.26 -26.73 -0.14 -2.34 16 11 C 0.02 0.37 4.82 -3.82 -0.02 0.35 16 12 N -0.47 -7.16 6.41 -244.62 -1.57 -8.73 16 13 C 0.00 0.04 6.57 -7.55 -0.05 -0.01 16 14 C -0.12 -1.16 3.99 -90.09 -0.36 -1.52 16 15 C -0.10 -0.88 4.41 -26.73 -0.12 -1.00 16 16 C -0.11 -0.79 5.80 -27.88 -0.16 -0.95 16 17 C 0.48 4.22 8.33 36.01 0.30 4.52 16 18 O -0.52 -6.39 16.74 -18.75 -0.31 -6.71 16 19 O -0.52 -3.49 13.42 -39.26 -0.53 -4.02 16 20 C 0.00 0.01 7.29 -7.54 -0.05 -0.05 16 21 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.96 7.67 -51.93 -0.40 0.56 16 25 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.04 0.65 7.56 -51.93 -0.39 0.25 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.93 7.43 -51.93 -0.39 0.54 16 30 H 0.10 0.89 8.12 -51.93 -0.42 0.47 16 31 H 0.07 0.77 7.76 -51.93 -0.40 0.37 16 32 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.41 1.16 9.10 45.56 0.41 1.57 16 36 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 311.40 15.07 4.69 4.69 Total: -1.00 -33.73 311.40 -8.49 -42.22 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -5.33 Total: -3.32 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -1.15 Total: -14.40 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: -0.83 Total: -35.44 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.84 Total: -10.73 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.73 -8.49 -42.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709378686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.821 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds