Wall clock time and date at job start Mon Mar 30 2020 03:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1 5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.47477 * 111.00075 * 74.02853 * 12 11 10 14 14 C 1.53510 * 87.93434 * 138.70391 * 13 12 11 15 15 C 1.53002 * 114.17242 * 220.33113 * 14 13 12 16 16 C 1.52998 * 109.46641 * 268.83821 * 15 14 13 17 17 C 1.50706 * 109.46889 * 179.97438 * 16 15 14 18 18 O 1.20822 * 120.00174 * 359.97438 * 17 16 15 19 19 O 1.34231 * 119.99829 * 179.97438 * 17 16 15 20 20 C 1.47489 * 110.99919 * 169.99763 * 12 11 10 21 21 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 23 23 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 24 24 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 25 25 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 26 26 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 27 27 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 28 28 H 1.09006 * 113.47280 * 253.46465 * 13 12 11 29 29 H 1.08995 * 113.48008 * 23.93226 * 13 12 11 30 30 H 1.09001 * 114.35108 * 87.63208 * 14 13 12 31 31 H 1.09000 * 109.47359 * 28.83256 * 15 14 13 32 32 H 1.09003 * 109.47481 * 148.83549 * 15 14 13 33 33 H 1.09005 * 109.47381 * 299.99399 * 16 15 14 34 34 H 1.08992 * 109.47622 * 60.00103 * 16 15 14 35 35 H 0.96707 * 116.99708 * 179.97438 * 19 17 16 36 36 H 1.09002 * 113.47515 * 336.06433 * 20 12 11 37 37 H 1.08999 * 113.47246 * 106.52749 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4346 -6.1037 0.0005 13 6 3.0651 -6.2593 1.3246 14 6 2.9145 -7.7777 1.1562 15 6 2.4912 -8.5105 2.4309 16 6 3.7363 -8.9573 3.1995 17 6 3.3194 -9.6786 4.4554 18 8 2.1468 -9.8203 4.7097 19 8 4.2509 -10.1636 5.2914 20 6 1.7472 -7.3866 0.2391 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 -0.8897 23 1 0.6240 -2.5566 0.8902 24 1 2.8718 -3.6044 0.8905 25 1 2.8718 -3.6044 -0.8895 26 1 0.8531 -5.0451 0.8897 27 1 0.8537 -5.0446 -0.8902 28 1 4.1027 -5.9265 1.3533 29 1 2.4682 -5.8516 2.1404 30 1 3.7462 -8.2573 0.6401 31 1 1.8995 -7.8412 3.0553 32 1 1.8943 -9.3836 2.1669 33 1 4.3281 -9.6267 2.5751 34 1 4.3331 -8.0843 3.4635 35 1 3.9351 -10.6183 6.0843 36 1 0.7986 -7.2796 0.7652 37 1 1.6679 -8.0089 -0.6522 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709378686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:26 Heat of formation + Delta-G solvation = -108.520907 kcal Electronic energy + Delta-G solvation = -16683.559293 eV Core-core repulsion = 13845.913553 eV Total energy + Delta-G solvation = -2837.645740 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.44356 -40.90905 -37.15227 -36.29920 -34.82063 -33.45670 -30.26628 -27.71643 -26.88369 -25.55877 -23.36729 -21.90495 -21.44470 -20.65349 -18.99910 -18.48681 -17.43368 -17.18109 -16.76328 -16.58524 -16.11838 -15.90293 -15.20585 -14.66253 -14.36998 -14.15653 -13.72002 -13.55316 -13.40685 -12.91218 -12.73576 -12.62410 -12.53533 -12.38165 -12.20562 -12.03156 -11.82456 -11.58413 -11.50510 -11.35053 -11.14793 -10.98066 -10.56770 -9.81898 -8.21632 -6.33388 1.26415 1.39087 1.42767 1.50790 2.20912 2.40123 3.11136 3.12901 3.39731 3.76703 3.99830 4.09041 4.21002 4.29204 4.40808 4.44266 4.56303 4.65078 4.69101 4.76877 4.82021 4.84384 4.87898 5.02783 5.09226 5.13941 5.21420 5.43463 5.45716 5.50565 5.68128 5.71360 5.82826 6.10832 6.25178 6.83063 7.03417 7.36008 8.90252 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035746 B = 0.003448 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.106864 B = 8119.743976 C = 8454.226856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.087 4.087 11 C 0.032 3.968 12 N -0.488 5.488 13 C -0.005 4.005 14 C -0.090 4.090 15 C -0.094 4.094 16 C -0.109 4.109 17 C 0.480 3.520 18 O -0.560 6.560 19 O -0.516 6.516 20 C -0.004 4.004 21 H 0.264 0.736 22 H -0.010 1.010 23 H -0.011 1.011 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.033 0.967 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.135 0.865 34 H 0.121 0.879 35 H 0.425 0.575 36 H 0.064 0.936 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.445 -21.092 6.958 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.125 4.125 11 C -0.096 4.096 12 N -0.210 5.210 13 C -0.134 4.134 14 C -0.109 4.109 15 C -0.132 4.132 16 C -0.146 4.146 17 C 0.325 3.675 18 O -0.451 6.451 19 O -0.329 6.329 20 C -0.133 4.133 21 H 0.073 0.927 22 H 0.009 0.991 23 H 0.008 0.992 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.153 0.847 34 H 0.139 0.861 35 H 0.286 0.714 36 H 0.082 0.918 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.513 -20.684 6.061 23.560 hybrid contribution -1.057 0.863 1.234 1.840 sum 8.456 -19.822 7.295 22.751 Atomic orbital electron populations 1.70099 1.07876 1.27918 1.51588 1.26028 0.95815 1.03516 0.94600 0.85462 0.78263 0.77832 0.79282 1.19103 1.20712 1.19019 1.21666 0.93542 0.92389 1.50756 0.92224 1.18972 0.94388 0.93208 0.94622 1.21301 0.97895 0.92779 1.00511 1.22556 0.94671 0.92167 1.00230 1.68925 1.21258 1.01825 1.28955 1.23987 1.01519 0.96714 0.91140 1.22688 0.98890 0.93831 0.95449 1.21321 0.96477 1.00635 0.94778 1.21457 1.00388 1.02093 0.90666 1.24027 0.83080 0.75071 0.85304 1.90732 1.21595 1.57113 1.75693 1.84520 1.42142 1.69123 1.37149 1.23937 0.96990 0.92127 1.00237 0.92705 0.99148 0.99223 0.93271 0.93141 0.94892 0.91747 0.89324 0.92150 0.85640 0.92647 0.90582 0.84721 0.86052 0.71356 0.91793 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.16 13.29 21.45 0.28 -57.88 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.78 5.26 30.59 0.16 -3.62 16 11 C 0.03 1.17 4.82 86.30 0.42 1.59 16 12 N -0.49 -14.28 6.41 -927.84 -5.95 -20.24 16 13 C 0.00 -0.11 6.57 83.58 0.55 0.44 16 14 C -0.09 -1.54 3.99 -10.45 -0.04 -1.59 16 15 C -0.09 -1.49 4.41 30.59 0.14 -1.35 16 16 C -0.11 -1.24 5.80 29.85 0.17 -1.06 16 17 C 0.48 7.67 8.33 71.24 0.59 8.27 16 18 O -0.56 -13.52 16.74 21.98 0.37 -13.15 16 19 O -0.52 -5.79 13.42 -51.43 -0.69 -6.48 16 20 C 0.00 -0.09 7.29 83.57 0.61 0.51 16 21 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 22 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 24 H 0.05 2.08 7.67 -2.39 -0.02 2.06 16 25 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.03 1.20 7.56 -2.39 -0.02 1.18 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.06 1.58 7.43 -2.39 -0.02 1.56 16 30 H 0.13 1.67 8.12 -2.39 -0.02 1.65 16 31 H 0.05 1.11 7.76 -2.39 -0.02 1.09 16 32 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 33 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.43 1.62 9.10 -74.05 -0.67 0.95 16 36 H 0.06 1.50 7.73 -2.39 -0.02 1.48 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -73.36 311.40 -0.16 -73.52 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 0.37 Total: 3.97 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 3.44 Total: -26.75 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -5.67 Total: -78.12 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.32 Total: -19.63 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -73.36 -0.16 -73.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709378686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.006 kcal (2) G-P(sol) polarization free energy of solvation -73.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds