Wall clock time and date at job start Mon Mar 30 2020 03:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47425 * 2 1 4 4 C 1.53007 * 109.46806 * 120.00241 * 2 1 3 5 5 C 1.53004 * 109.47110 * 65.85593 * 4 2 1 6 6 H 1.09002 * 108.72706 * 303.45515 * 5 4 2 7 7 C 1.51327 * 108.76316 * 185.17302 * 5 4 2 8 8 O 1.46713 * 107.55749 * 147.57985 * 7 5 4 9 9 C 1.29048 * 118.16063 * 72.76849 * 8 7 5 10 10 O 1.20826 * 119.94879 * 124.31274 * 9 8 7 11 11 C 1.52499 * 120.10127 * 304.58394 * 9 8 7 12 12 C 1.51413 * 107.44713 * 70.04145 * 11 9 8 13 13 H 1.09004 * 108.65217 * 33.18580 * 12 11 9 14 14 C 1.50699 * 108.74820 * 151.35703 * 12 11 9 15 15 H 1.08001 * 119.99703 * 123.60753 * 14 12 11 16 16 C 1.37875 * 120.00573 * 303.61256 * 14 12 11 17 17 N 1.31522 * 119.99531 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00490 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47348 * 59.99431 * 18 16 14 20 20 H 1.48496 * 109.47243 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46867 * 299.99817 * 18 16 14 22 22 N 1.47033 * 113.14115 * 272.30613 * 12 11 9 23 23 H 1.09001 * 109.46952 * 299.99996 * 1 2 3 24 24 H 1.09003 * 109.47112 * 59.99439 * 1 2 3 25 25 H 1.09000 * 109.47541 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47079 * 239.99501 * 2 1 3 27 27 H 1.08992 * 109.47124 * 300.32628 * 3 2 1 28 28 H 1.09008 * 109.47107 * 60.32847 * 3 2 1 29 29 H 1.09000 * 109.46998 * 180.32075 * 3 2 1 30 30 H 1.08994 * 109.47180 * 305.85632 * 4 2 1 31 31 H 1.08993 * 109.47044 * 185.85360 * 4 2 1 32 32 H 1.09001 * 109.84586 * 28.06268 * 7 5 4 33 33 H 1.09001 * 109.84166 * 267.09177 * 7 5 4 34 34 H 1.08997 * 109.86934 * 189.52653 * 11 9 8 35 35 H 1.08998 * 109.86518 * 310.56163 * 11 9 8 36 36 H 0.96996 * 119.99953 * 180.02562 * 17 16 14 37 37 H 1.00907 * 110.99891 * 168.70544 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6536 -2.2001 1.1778 6 1 0.5723 -2.2741 1.0622 7 6 2.0514 -2.8704 2.4749 8 8 1.0749 -3.9323 2.7419 9 6 1.1209 -4.9985 2.0164 10 8 1.2323 -6.0810 2.5413 11 6 1.0411 -4.8937 0.4971 12 6 2.3344 -4.2701 0.0164 13 1 3.1419 -4.5910 0.6746 14 6 2.6218 -4.7646 -1.3778 15 1 2.7591 -4.0587 -2.1835 16 6 2.7093 -6.1182 -1.6249 17 7 2.5424 -6.9779 -0.6436 18 14 3.0662 -6.7312 -3.3530 19 1 4.3760 -6.1983 -3.8066 20 1 3.1083 -8.2156 -3.3528 21 1 1.9973 -6.2669 -4.2734 22 7 2.2955 -2.8004 -0.0020 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6720 1.9579 -0.8870 28 1 1.6816 1.9546 0.8930 29 1 3.1301 1.4423 -0.0058 30 1 1.5935 -0.2717 2.1361 31 1 3.1248 -0.6315 1.3033 32 1 2.0382 -2.1429 3.2866 33 1 3.0484 -3.3003 2.3786 34 1 0.9250 -5.8866 0.0628 35 1 0.1983 -4.2635 0.2130 36 1 2.6044 -7.9302 -0.8173 37 1 3.2172 -2.4161 -0.1469 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709917955.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:46 Heat of formation + Delta-G solvation = -87.865917 kcal Electronic energy + Delta-G solvation = -18497.745647 eV Core-core repulsion = 15660.995575 eV Total energy + Delta-G solvation = -2836.750072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.32173 -37.63085 -35.94096 -35.09863 -32.79656 -30.62469 -27.79175 -27.04078 -26.36593 -25.69927 -22.27108 -20.23106 -20.19835 -19.11040 -16.75359 -16.38930 -15.99746 -15.59048 -15.40997 -14.65036 -14.20994 -14.11037 -13.83408 -13.18839 -12.60859 -12.39666 -12.19448 -11.98890 -11.86404 -11.75145 -11.36383 -11.13022 -10.86345 -10.70048 -10.58412 -10.54971 -10.37394 -10.32252 -10.08688 -9.90701 -9.62545 -8.78639 -8.45291 -7.43257 -6.07599 -4.19654 2.61360 3.28630 3.34404 3.35949 4.17768 4.32737 4.75160 4.92878 5.00316 5.11919 5.17916 5.31462 5.40878 5.47173 5.60980 5.64407 5.73110 5.83667 5.90460 5.98222 5.99628 6.11197 6.29961 6.33880 6.45014 6.60205 6.62773 6.68762 6.98792 7.44170 7.70751 7.93979 8.18463 8.21288 8.37986 8.53904 8.88617 9.46999 10.94590 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.020764 B = 0.008647 C = 0.006553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.157354 B = 3237.462363 C = 4271.963001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.109 4.109 5 C 0.051 3.949 6 H 0.091 0.909 7 C 0.063 3.937 8 O -0.397 6.397 9 C 0.481 3.519 10 O -0.477 6.477 11 C -0.152 4.152 12 C 0.225 3.775 13 H -0.007 1.007 14 C -0.507 4.507 15 H 0.068 0.932 16 C 0.055 3.945 17 N -0.881 5.881 18 Si 0.902 3.098 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 N -0.681 5.681 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.138 0.862 35 H 0.069 0.931 36 H 0.266 0.734 37 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 13.451 2.331 13.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.147 4.147 5 C -0.059 4.059 6 H 0.109 0.891 7 C -0.012 4.012 8 O -0.317 6.317 9 C 0.323 3.677 10 O -0.359 6.359 11 C -0.191 4.191 12 C 0.118 3.882 13 H 0.011 0.989 14 C -0.546 4.546 15 H 0.086 0.914 16 C -0.147 4.147 17 N -0.519 5.519 18 Si 0.730 3.270 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.201 1.201 22 N -0.313 5.313 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.797 12.737 2.415 13.088 hybrid contribution 0.952 -0.551 -0.282 1.136 sum -0.845 12.187 2.133 12.401 Atomic orbital electron populations 1.21838 0.95572 1.02167 1.00641 1.21033 0.95796 0.94931 0.99287 1.21863 1.00680 0.96727 1.01132 1.21777 1.00659 0.93911 0.98382 1.22106 1.01830 0.93561 0.88415 0.89138 1.23934 0.90155 0.87001 1.00103 1.84897 1.54771 1.28922 1.63113 1.23211 0.71478 0.82265 0.90784 1.90546 1.40872 1.27995 1.76536 1.22679 1.00373 1.07716 0.88362 1.18602 0.91322 0.80846 0.97406 0.98918 1.21014 1.48505 0.91471 0.93562 0.91407 1.25057 0.95285 0.96890 0.97514 1.69907 1.48299 1.02521 1.31144 0.86491 0.78871 0.77512 0.84138 1.20275 1.21299 1.20124 1.60067 1.26312 1.09150 1.35791 0.93579 0.93277 0.91885 0.89235 0.93029 0.93323 0.93015 0.91779 0.92059 0.87745 0.91515 0.84468 0.91278 0.92356 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.96 37.16 0.33 -1.36 16 2 C -0.09 -1.08 2.84 -90.62 -0.26 -1.34 16 3 C -0.15 -1.45 9.19 37.15 0.34 -1.10 16 4 C -0.11 -1.28 3.90 -26.73 -0.10 -1.39 16 5 C 0.05 0.79 1.99 -68.44 -0.14 0.66 16 6 H 0.09 1.50 5.61 -51.93 -0.29 1.21 16 7 C 0.06 1.00 6.13 36.31 0.22 1.23 16 8 O -0.40 -8.15 9.94 -28.62 -0.28 -8.43 16 9 C 0.48 11.50 6.79 36.90 0.25 11.75 16 10 O -0.48 -13.02 17.93 -19.01 -0.34 -13.36 16 11 C -0.15 -3.64 4.89 -27.79 -0.14 -3.78 16 12 C 0.23 5.30 2.03 -69.59 -0.14 5.16 16 13 H -0.01 -0.17 7.02 -51.93 -0.36 -0.54 16 14 C -0.51 -13.16 8.82 -34.44 -0.30 -13.46 16 15 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 16 C 0.06 1.47 5.09 -17.82 -0.09 1.38 16 17 N -0.88 -24.94 11.18 55.43 0.62 -24.32 16 18 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 N -0.68 -12.61 5.38 -102.45 -0.55 -13.16 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.84 6.51 -51.93 -0.34 0.50 16 26 H 0.09 1.23 7.44 -51.93 -0.39 0.84 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.66 7.95 -51.93 -0.41 0.25 16 31 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.10 1.29 7.65 -51.93 -0.40 0.89 16 33 H 0.07 1.13 7.26 -51.93 -0.38 0.76 16 34 H 0.14 3.76 5.47 -51.93 -0.28 3.47 16 35 H 0.07 1.53 7.50 -51.93 -0.39 1.14 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.34 5.82 8.46 -39.29 -0.33 5.49 16 LS Contribution 291.72 15.07 4.40 4.40 Total: -1.00 -29.68 291.72 -6.86 -36.53 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.65 Total: 4.86 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -0.02 Total: -2.26 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.07 Total: -37.48 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.63 Total: -21.79 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.68 -6.86 -36.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917955.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.334 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds