Wall clock time and date at job start Mon Mar 30 2020 03:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46945 * 2 1 4 4 C 1.53003 * 109.46752 * 119.99616 * 2 1 3 5 5 C 1.53005 * 109.47176 * 65.89073 * 4 2 1 6 6 H 1.09003 * 109.39864 * 304.88314 * 5 4 2 7 7 C 1.54763 * 109.40069 * 185.05476 * 5 4 2 8 8 O 1.47251 * 109.90832 * 201.40748 * 7 5 4 9 9 C 1.31705 * 123.12203 * 318.22914 * 8 7 5 10 10 O 1.20830 * 120.85816 * 268.31008 * 9 8 7 11 11 C 1.54304 * 118.27863 * 88.32385 * 9 8 7 12 12 C 1.47735 * 106.49412 * 293.99324 * 11 9 8 13 13 H 1.09002 * 108.57587 * 296.87815 * 12 11 9 14 14 C 1.50696 * 108.58110 * 179.06698 * 12 11 9 15 15 H 1.08003 * 119.99784 * 237.84219 * 14 12 11 16 16 C 1.37876 * 120.00221 * 57.84404 * 14 12 11 17 17 N 1.31513 * 119.99747 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99978 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47194 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46694 * 120.00109 * 18 16 14 21 21 H 1.48500 * 109.46945 * 240.00161 * 18 16 14 22 22 N 1.43919 * 109.48501 * 64.70409 * 5 4 2 23 23 H 1.09003 * 109.47344 * 299.99949 * 1 2 3 24 24 H 1.08994 * 109.47229 * 60.00335 * 1 2 3 25 25 H 1.09000 * 109.47237 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46907 * 239.99359 * 2 1 3 27 27 H 1.08998 * 109.46622 * 180.28152 * 3 2 1 28 28 H 1.09000 * 109.47242 * 300.28334 * 3 2 1 29 29 H 1.09000 * 109.47551 * 60.28576 * 3 2 1 30 30 H 1.08991 * 109.47646 * 305.88669 * 4 2 1 31 31 H 1.09005 * 109.46657 * 185.87883 * 4 2 1 32 32 H 1.09003 * 109.40051 * 81.28071 * 7 5 4 33 33 H 1.09000 * 109.32834 * 321.49821 * 7 5 4 34 34 H 1.09004 * 110.04841 * 174.74981 * 11 9 8 35 35 H 1.09003 * 110.13303 * 53.28522 * 11 9 8 36 36 H 0.97008 * 119.99866 * 180.02562 * 17 16 14 37 37 H 1.00898 * 111.11517 * 94.03193 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6544 -2.2001 1.1776 6 1 0.5770 -2.2869 1.0361 7 6 2.0577 -2.9011 2.4971 8 8 2.1786 -4.3521 2.2774 9 6 1.3247 -5.0436 1.5512 10 8 0.3632 -5.5703 2.0593 11 6 1.5842 -5.1640 0.0349 12 6 1.4359 -3.8050 -0.5252 13 1 0.4079 -3.4765 -0.3717 14 6 1.7032 -3.8646 -2.0071 15 1 2.4848 -3.2575 -2.4396 16 6 0.9501 -4.6940 -2.8107 17 7 -0.0019 -5.4328 -2.2841 18 14 1.2811 -4.7672 -4.6477 19 1 2.3955 -3.8463 -4.9870 20 1 1.6519 -6.1538 -5.0289 21 1 0.0594 -4.3604 -5.3874 22 7 2.3324 -2.8198 0.0697 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1299 1.4424 -0.0050 28 1 1.6725 1.9578 -0.8874 29 1 1.6808 1.9549 0.8925 30 1 1.5931 -0.2719 2.1361 31 1 3.1249 -0.6309 1.3035 32 1 1.2972 -2.7119 3.2547 33 1 3.0145 -2.5056 2.8379 34 1 0.8544 -5.8360 -0.4169 35 1 2.5936 -5.5340 -0.1448 36 1 -0.5316 -6.0167 -2.8495 37 1 3.1959 -3.2493 0.3663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709917959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:47 Heat of formation + Delta-G solvation = -86.753178 kcal Electronic energy + Delta-G solvation = -18617.473136 eV Core-core repulsion = 15780.771315 eV Total energy + Delta-G solvation = -2836.701820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.12897 -37.60371 -35.82829 -35.24632 -32.85248 -30.95428 -27.49326 -26.87434 -26.30400 -25.64657 -22.21434 -20.81811 -19.57629 -19.29012 -17.07142 -16.46014 -15.64946 -15.42285 -15.39371 -14.61149 -14.14655 -13.98929 -13.44560 -13.32000 -12.90545 -12.57988 -12.18244 -12.04949 -11.90992 -11.34978 -11.19746 -11.13970 -11.03105 -10.74856 -10.48915 -10.36536 -10.22860 -10.13724 -10.09322 -10.00492 -9.69150 -8.82729 -8.47918 -7.59040 -6.13198 -4.18859 2.22204 3.25505 3.34083 3.38396 3.93689 4.33666 4.74115 4.90148 5.14915 5.29022 5.35239 5.40828 5.45688 5.50387 5.64238 5.71224 5.88788 5.97156 6.10001 6.10900 6.16351 6.21771 6.31729 6.42135 6.54412 6.68961 6.77069 6.93281 6.99718 7.33799 7.68789 7.74978 8.04886 8.31736 8.33896 8.40831 8.89884 9.47799 10.92719 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.010482 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.417084 B = 2670.667029 C = 3902.552466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.093 4.093 5 C 0.040 3.960 6 H 0.081 0.919 7 C 0.073 3.927 8 O -0.434 6.434 9 C 0.484 3.516 10 O -0.487 6.487 11 C -0.155 4.155 12 C 0.200 3.800 13 H 0.035 0.965 14 C -0.492 4.492 15 H 0.070 0.930 16 C 0.053 3.947 17 N -0.896 5.896 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.285 1.285 22 N -0.648 5.648 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.078 0.922 36 H 0.264 0.736 37 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.144 8.962 5.474 11.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.201 4.201 4 C -0.132 4.132 5 C -0.072 4.072 6 H 0.099 0.901 7 C -0.001 4.001 8 O -0.358 6.358 9 C 0.327 3.673 10 O -0.369 6.369 11 C -0.195 4.195 12 C 0.091 3.909 13 H 0.053 0.947 14 C -0.530 4.530 15 H 0.089 0.911 16 C -0.148 4.148 17 N -0.535 5.535 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.211 1.211 22 N -0.277 5.277 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.159 0.841 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.504 9.036 5.264 11.029 hybrid contribution -0.080 -0.832 -0.211 0.862 sum 3.425 8.203 5.053 10.225 Atomic orbital electron populations 1.21849 0.96018 1.01945 1.00458 1.20996 0.95229 0.94791 0.99926 1.21836 1.00608 0.96830 1.00843 1.21540 1.00757 0.93363 0.97518 1.22495 1.00151 0.95363 0.89208 0.90106 1.24514 1.02873 0.74016 0.98685 1.84998 1.54423 1.23417 1.72999 1.25177 0.77435 0.75241 0.89465 1.90484 1.26060 1.45721 1.74610 1.22956 1.05526 1.05851 0.85203 1.18242 0.92484 0.84934 0.95194 0.94674 1.21152 1.18133 1.23489 0.90271 0.91133 1.25032 0.95002 0.95478 0.99286 1.69766 1.21286 1.26911 1.35540 0.86353 0.78160 0.77765 0.84647 1.19614 1.21095 1.21096 1.60677 1.06855 1.34133 1.26033 0.93888 0.93202 0.92244 0.88600 0.93057 0.93160 0.93615 0.92822 0.91816 0.92038 0.87974 0.84053 0.90335 0.92570 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 8.97 37.16 0.33 -1.77 16 2 C -0.09 -1.29 2.86 -90.62 -0.26 -1.55 16 3 C -0.14 -1.69 9.19 37.16 0.34 -1.35 16 4 C -0.09 -1.24 4.25 -26.73 -0.11 -1.35 16 5 C 0.04 0.65 2.08 -68.37 -0.14 0.51 16 6 H 0.08 1.49 5.09 -51.93 -0.26 1.23 16 7 C 0.07 1.10 6.69 38.09 0.25 1.36 16 8 O -0.43 -8.45 9.42 -33.33 -0.31 -8.76 16 9 C 0.48 10.84 6.82 37.84 0.26 11.10 16 10 O -0.49 -12.26 17.96 -18.83 -0.34 -12.60 16 11 C -0.16 -3.58 5.13 -28.59 -0.15 -3.73 16 12 C 0.20 4.60 1.89 -71.96 -0.14 4.46 16 13 H 0.04 0.91 6.91 -51.93 -0.36 0.56 16 14 C -0.49 -12.47 8.76 -34.44 -0.30 -12.77 16 15 H 0.07 1.80 7.81 -52.48 -0.41 1.39 16 16 C 0.05 1.38 5.28 -17.82 -0.09 1.29 16 17 N -0.90 -24.42 11.11 55.43 0.62 -23.81 16 18 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 N -0.65 -12.19 5.39 -105.40 -0.57 -12.75 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.99 6.49 -51.93 -0.34 0.66 16 26 H 0.10 1.64 7.59 -51.93 -0.39 1.25 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.24 7.98 -51.93 -0.41 0.83 16 34 H 0.14 3.72 5.79 -51.93 -0.30 3.41 16 35 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.33 6.04 7.61 -39.29 -0.30 5.74 16 LS Contribution 293.51 15.07 4.42 4.42 Total: -1.00 -28.05 293.51 -6.93 -34.98 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.72 Total: 6.86 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.01 Total: -3.81 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.05 Total: -36.56 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.65 Total: -21.36 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.05 -6.93 -34.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.777 kcal (2) G-P(sol) polarization free energy of solvation -28.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds