Wall clock time and date at job start Mon Mar 30 2020 03:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46945 * 2 1 4 4 C 1.53003 * 109.46752 * 119.99616 * 2 1 3 5 5 C 1.53005 * 109.47176 * 65.89073 * 4 2 1 6 6 H 1.09003 * 109.39864 * 304.88314 * 5 4 2 7 7 C 1.54763 * 109.40069 * 185.05476 * 5 4 2 8 8 O 1.47251 * 109.90832 * 201.40748 * 7 5 4 9 9 C 1.31705 * 123.12203 * 318.22914 * 8 7 5 10 10 O 1.20830 * 120.85816 * 268.31008 * 9 8 7 11 11 C 1.54304 * 118.27863 * 88.32385 * 9 8 7 12 12 C 1.47735 * 106.49412 * 293.99324 * 11 9 8 13 13 H 1.09002 * 108.57587 * 296.87815 * 12 11 9 14 14 C 1.50696 * 108.58110 * 179.06698 * 12 11 9 15 15 H 1.08003 * 119.99784 * 237.84219 * 14 12 11 16 16 C 1.37876 * 120.00221 * 57.84404 * 14 12 11 17 17 N 1.31513 * 119.99747 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99978 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47194 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46694 * 120.00109 * 18 16 14 21 21 H 1.48500 * 109.46945 * 240.00161 * 18 16 14 22 22 N 1.43919 * 109.48501 * 64.70409 * 5 4 2 23 23 H 1.09003 * 109.47344 * 299.99949 * 1 2 3 24 24 H 1.08994 * 109.47229 * 60.00335 * 1 2 3 25 25 H 1.09000 * 109.47237 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.46907 * 239.99359 * 2 1 3 27 27 H 1.08998 * 109.46622 * 180.28152 * 3 2 1 28 28 H 1.09000 * 109.47242 * 300.28334 * 3 2 1 29 29 H 1.09000 * 109.47551 * 60.28576 * 3 2 1 30 30 H 1.08991 * 109.47646 * 305.88669 * 4 2 1 31 31 H 1.09005 * 109.46657 * 185.87883 * 4 2 1 32 32 H 1.09003 * 109.40051 * 81.28071 * 7 5 4 33 33 H 1.09000 * 109.32834 * 321.49821 * 7 5 4 34 34 H 1.09004 * 110.04841 * 174.74981 * 11 9 8 35 35 H 1.09003 * 110.13303 * 53.28522 * 11 9 8 36 36 H 0.97008 * 119.99866 * 180.02562 * 17 16 14 37 37 H 1.00898 * 111.11517 * 94.03193 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6544 -2.2001 1.1776 6 1 0.5770 -2.2869 1.0361 7 6 2.0577 -2.9011 2.4971 8 8 2.1786 -4.3521 2.2774 9 6 1.3247 -5.0436 1.5512 10 8 0.3632 -5.5703 2.0593 11 6 1.5842 -5.1640 0.0349 12 6 1.4359 -3.8050 -0.5252 13 1 0.4079 -3.4765 -0.3717 14 6 1.7032 -3.8646 -2.0071 15 1 2.4848 -3.2575 -2.4396 16 6 0.9501 -4.6940 -2.8107 17 7 -0.0019 -5.4328 -2.2841 18 14 1.2811 -4.7672 -4.6477 19 1 2.3955 -3.8463 -4.9870 20 1 1.6519 -6.1538 -5.0289 21 1 0.0594 -4.3604 -5.3874 22 7 2.3324 -2.8198 0.0697 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1299 1.4424 -0.0050 28 1 1.6725 1.9578 -0.8874 29 1 1.6808 1.9549 0.8925 30 1 1.5931 -0.2719 2.1361 31 1 3.1249 -0.6309 1.3035 32 1 1.2972 -2.7119 3.2547 33 1 3.0145 -2.5056 2.8379 34 1 0.8544 -5.8360 -0.4169 35 1 2.5936 -5.5340 -0.1448 36 1 -0.5316 -6.0167 -2.8495 37 1 3.1959 -3.2493 0.3663 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709917959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:47 Heat of formation + Delta-G solvation = -103.881201 kcal Electronic energy + Delta-G solvation = -18618.215863 eV Core-core repulsion = 15780.771315 eV Total energy + Delta-G solvation = -2837.444547 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.79688 -39.16156 -37.41062 -36.81284 -34.52839 -32.65743 -29.04966 -27.96359 -27.93005 -27.18926 -23.83955 -22.48594 -20.97187 -20.66550 -18.79061 -18.31865 -17.39452 -17.13527 -16.87444 -16.16427 -15.65356 -15.40017 -14.79943 -14.62768 -14.46152 -14.38974 -13.68419 -13.49442 -13.02520 -12.95449 -12.91526 -12.59109 -12.41264 -12.38284 -12.19504 -12.00564 -11.77159 -11.64901 -11.45649 -11.30604 -11.16708 -10.67353 -10.46098 -9.15866 -8.13288 -6.25890 0.53447 1.43643 1.46706 1.58101 2.25395 2.44014 3.14292 3.41552 3.53348 3.81027 4.08691 4.20588 4.26460 4.33263 4.41132 4.46898 4.57363 4.73374 4.85093 4.90141 4.98857 5.01088 5.10494 5.12600 5.20816 5.23270 5.44817 5.51593 5.60438 5.72694 5.80794 6.01739 6.16775 6.51714 6.64793 6.78435 6.89320 7.45113 8.91258 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.010482 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.417084 B = 2670.667029 C = 3902.552466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.137 4.137 4 C -0.084 4.084 5 C 0.038 3.962 6 H 0.052 0.948 7 C 0.070 3.930 8 O -0.435 6.435 9 C 0.498 3.502 10 O -0.523 6.523 11 C -0.151 4.151 12 C 0.215 3.785 13 H -0.002 1.002 14 C -0.500 4.500 15 H 0.068 0.932 16 C 0.007 3.993 17 N -0.925 5.925 18 Si 0.963 3.037 19 H -0.264 1.264 20 H -0.282 1.282 21 H -0.287 1.287 22 N -0.643 5.643 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.025 0.975 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.263 0.737 37 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.823 10.859 6.352 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.194 4.194 4 C -0.122 4.122 5 C -0.073 4.073 6 H 0.070 0.930 7 C -0.002 4.002 8 O -0.358 6.358 9 C 0.342 3.658 10 O -0.407 6.407 11 C -0.191 4.191 12 C 0.105 3.895 13 H 0.015 0.985 14 C -0.539 4.539 15 H 0.086 0.914 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.789 3.211 19 H -0.188 1.188 20 H -0.208 1.208 21 H -0.213 1.213 22 N -0.272 5.272 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.165 0.835 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.214 10.966 6.154 13.612 hybrid contribution -0.592 -1.347 -0.440 1.536 sum 4.622 9.618 5.714 12.105 Atomic orbital electron populations 1.21827 0.96676 1.00045 1.01501 1.20952 0.94684 0.96434 0.98990 1.21758 1.01108 0.94786 1.01727 1.21509 1.02062 0.90567 0.98082 1.22538 0.98373 0.97494 0.88938 0.92999 1.24969 1.05969 0.71086 0.98187 1.84956 1.53128 1.25630 1.72122 1.24806 0.76872 0.74964 0.89126 1.90475 1.27704 1.47269 1.75237 1.22738 1.04987 1.05237 0.86164 1.17909 0.91320 0.85575 0.94676 0.98453 1.21430 1.17724 1.23001 0.91723 0.91413 1.25773 0.94881 0.95301 1.03188 1.69923 1.22229 1.27633 1.36757 0.85415 0.77935 0.77777 0.79956 1.18761 1.20837 1.21331 1.60599 1.06479 1.32553 1.27614 0.91659 0.93356 0.95559 0.92141 0.92168 0.93266 0.91805 0.90036 0.89934 0.90430 0.83516 0.87327 0.89242 0.92802 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 8.97 71.98 0.65 -3.42 16 2 C -0.09 -2.46 2.86 -10.79 -0.03 -2.49 16 3 C -0.14 -2.80 9.19 71.98 0.66 -2.14 16 4 C -0.08 -1.97 4.25 30.60 0.13 -1.84 16 5 C 0.04 1.19 2.08 46.07 0.10 1.29 16 6 H 0.05 1.95 5.09 -2.39 -0.01 1.94 16 7 C 0.07 1.90 6.69 72.58 0.49 2.38 16 8 O -0.43 -16.17 9.42 -29.87 -0.28 -16.46 16 9 C 0.50 22.47 6.82 72.42 0.49 22.96 16 10 O -0.52 -26.82 17.96 22.02 0.40 -26.42 16 11 C -0.15 -7.13 5.13 29.39 0.15 -6.98 16 12 C 0.21 10.13 1.89 42.71 0.08 10.21 16 13 H 0.00 -0.13 6.91 -2.39 -0.02 -0.15 16 14 C -0.50 -25.83 8.76 25.60 0.22 -25.61 16 15 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 16 C 0.01 0.36 5.28 84.65 0.45 0.80 16 17 N -0.92 -52.20 11.11 21.45 0.24 -51.96 16 18 Si 0.96 42.53 29.54 68.60 2.03 44.56 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 22 N -0.64 -23.81 5.39 -487.39 -2.63 -26.44 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.03 0.90 6.49 -2.39 -0.02 0.88 16 26 H 0.06 2.05 7.59 -2.39 -0.02 2.04 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.15 2.78 7.98 -2.39 -0.02 2.76 16 34 H 0.11 5.97 5.79 -2.38 -0.01 5.96 16 35 H 0.09 3.96 8.14 -2.39 -0.02 3.94 16 36 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 37 H 0.34 11.77 7.61 -89.70 -0.68 11.09 16 Total: -1.00 -62.69 293.51 3.51 -59.18 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.38 Total: 22.38 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 3.38 Total: -4.83 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -2.39 Total: -78.40 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: 0.11 Total: -42.88 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -62.69 3.51 -59.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.704 kcal (2) G-P(sol) polarization free energy of solvation -62.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds