Wall clock time and date at job start Mon Mar 30 2020 03:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99831 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47445 * 325.00257 * 12 11 10 14 14 C 1.53006 * 109.46920 * 84.99965 * 12 11 10 15 15 C 1.52998 * 109.46761 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47137 * 299.99927 * 15 14 12 17 17 H 1.08997 * 109.47125 * 299.99773 * 16 15 14 18 18 C 1.50704 * 109.46633 * 180.02562 * 16 15 14 19 19 O 1.20833 * 119.99524 * 239.99745 * 18 16 15 20 20 O 1.34222 * 120.00636 * 60.00473 * 18 16 15 21 21 C 1.52997 * 109.47199 * 60.00229 * 16 15 14 22 22 C 1.52998 * 109.46889 * 299.99922 * 21 16 15 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 27 27 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 28 28 H 1.00897 * 111.00046 * 56.04666 * 11 10 9 29 29 H 1.08998 * 109.47145 * 299.99617 * 14 12 11 30 30 H 1.09003 * 109.46734 * 60.00342 * 14 12 11 31 31 H 1.09000 * 109.47297 * 180.02562 * 15 14 12 32 32 H 1.08997 * 109.47439 * 60.00392 * 15 14 12 33 33 H 0.96699 * 117.00630 * 179.97438 * 20 18 16 34 34 H 1.08998 * 109.46911 * 179.97438 * 21 16 15 35 35 H 1.08997 * 109.46732 * 59.99929 * 21 16 15 36 36 H 1.08997 * 109.47439 * 299.99574 * 22 21 16 37 37 H 1.08997 * 109.46655 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 1 3.3187 -5.8284 -0.5882 14 6 2.8530 -6.3931 1.4379 15 6 3.8154 -7.5825 1.4385 16 6 3.1202 -8.8014 0.8285 17 1 2.2369 -9.0484 1.4174 18 6 4.0680 -9.9730 0.8298 19 8 4.3781 -10.5004 -0.2123 20 8 4.5678 -10.4309 1.9883 21 6 2.7026 -8.4841 -0.6088 22 6 1.7402 -7.2947 -0.6094 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8906 28 1 0.8747 -4.9841 -0.7817 29 1 3.3479 -5.5246 1.8726 30 1 1.9696 -6.6406 2.0266 31 1 4.1126 -7.8089 2.4625 32 1 4.6987 -7.3355 0.8497 33 1 5.1714 -11.1847 1.9387 34 1 2.2078 -9.3526 -1.0434 35 1 3.5859 -8.2371 -1.1976 36 1 0.8569 -7.5417 -0.0206 37 1 1.4424 -7.0690 -1.6333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709979369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:53 Heat of formation + Delta-G solvation = -129.033783 kcal Electronic energy + Delta-G solvation = -17204.536144 eV Core-core repulsion = 14366.000899 eV Total energy + Delta-G solvation = -2838.535245 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.78462 -38.58192 -36.41535 -35.27766 -33.18604 -31.00095 -30.46549 -27.79033 -24.36668 -23.11499 -22.90039 -21.04468 -20.62906 -19.78879 -18.27080 -16.97826 -16.73356 -16.06003 -15.40098 -14.78565 -14.52537 -14.08330 -13.84091 -13.70115 -13.17781 -13.05200 -12.53060 -12.31187 -11.91998 -11.84026 -11.74949 -11.52625 -11.22159 -11.13693 -10.89046 -10.66809 -10.52405 -10.18177 -10.11984 -10.03373 -9.68878 -8.56477 -8.31360 -7.92260 -6.34809 -4.03662 1.94205 2.77434 3.44712 3.46867 3.65613 4.35114 4.40966 4.50277 4.58243 4.89556 5.02741 5.09399 5.15934 5.32614 5.35953 5.38714 5.43162 5.65746 5.77590 5.84144 5.87731 6.06781 6.07906 6.18389 6.22754 6.26844 6.27971 6.44479 6.84589 7.28067 7.50969 7.62368 7.69409 7.87008 8.25820 8.47845 8.90373 9.68870 11.06429 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.056070 B = 0.003731 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.256471 B = 7503.305289 C = 7714.615146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.012 3.988 10 C 0.073 3.927 11 N -0.690 5.690 12 C 0.083 3.917 13 H 0.040 0.960 14 C -0.105 4.105 15 C -0.109 4.109 16 C -0.078 4.078 17 H 0.111 0.889 18 C 0.483 3.517 19 O -0.518 6.518 20 O -0.516 6.516 21 C -0.100 4.100 22 C -0.120 4.120 23 H 0.270 0.730 24 H 0.016 0.984 25 H 0.004 0.996 26 H 0.016 0.984 27 H 0.060 0.940 28 H 0.336 0.664 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.407 0.593 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.868 -19.581 2.467 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.642 4.642 8 H 0.065 0.935 9 C -0.025 4.025 10 C -0.055 4.055 11 N -0.321 5.321 12 C -0.027 4.027 13 H 0.058 0.942 14 C -0.143 4.143 15 C -0.147 4.147 16 C -0.098 4.098 17 H 0.129 0.871 18 C 0.325 3.675 19 O -0.406 6.406 20 O -0.327 6.327 21 C -0.138 4.138 22 C -0.157 4.157 23 H 0.080 0.920 24 H 0.035 0.965 25 H 0.022 0.978 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.154 0.846 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.266 0.734 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.402 -17.731 2.880 19.070 hybrid contribution 1.021 -2.231 -0.968 2.638 sum 7.423 -19.962 1.912 21.383 Atomic orbital electron populations 1.70772 1.06871 1.30695 1.46540 1.25841 0.96561 1.02686 0.93793 0.83543 0.74877 0.75352 0.76477 1.20749 1.21426 1.21518 1.22001 0.94219 0.92054 1.55952 0.93453 1.19200 0.94689 0.92276 0.96377 1.22042 0.96607 0.88052 0.98788 1.60603 1.19806 1.01983 1.49672 1.21539 0.94648 0.90744 0.95778 0.94205 1.21520 0.98942 0.96781 0.97099 1.21558 0.98705 0.93185 1.01283 1.21154 0.97092 0.91087 1.00418 0.87115 1.23718 0.79201 0.83882 0.80680 1.90716 1.58126 1.58230 1.33526 1.84561 1.60848 1.50847 1.36486 1.21416 1.00302 0.98667 0.93444 1.21727 0.98584 0.94092 1.01342 0.92000 0.96541 0.97789 0.96561 0.92174 0.84598 0.91117 0.90903 0.90448 0.91571 0.73413 0.90961 0.91036 0.90761 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.32 13.65 55.43 0.76 -27.57 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.50 29.90 -169.99 -5.08 20.42 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.60 -17.44 9.11 -34.44 -0.31 -17.76 16 8 H 0.05 1.34 7.74 -52.48 -0.41 0.94 16 9 C 0.01 0.31 4.54 -27.88 -0.13 0.18 16 10 C 0.07 1.54 5.42 -3.83 -0.02 1.52 16 11 N -0.69 -11.84 6.31 -106.72 -0.67 -12.51 16 12 C 0.08 1.14 2.50 -67.71 -0.17 0.97 16 13 H 0.04 0.58 7.80 -51.93 -0.41 0.18 16 14 C -0.11 -1.30 5.43 -26.73 -0.15 -1.45 16 15 C -0.11 -1.09 5.14 -26.73 -0.14 -1.23 16 16 C -0.08 -0.75 2.63 -91.77 -0.24 -0.99 16 17 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 18 C 0.48 4.90 7.63 36.01 0.27 5.18 16 19 O -0.52 -6.78 16.74 -18.76 -0.31 -7.09 16 20 O -0.52 -4.00 13.33 -39.24 -0.52 -4.52 16 21 C -0.10 -1.03 4.50 -26.73 -0.12 -1.15 16 22 C -0.12 -1.33 5.19 -26.73 -0.14 -1.46 16 23 H 0.27 8.34 7.22 -40.82 -0.29 8.05 16 24 H 0.02 0.45 8.01 -51.93 -0.42 0.04 16 25 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 26 H 0.02 0.34 8.06 -51.93 -0.42 -0.07 16 27 H 0.06 1.28 7.44 -51.93 -0.39 0.89 16 28 H 0.34 5.56 8.35 -39.29 -0.33 5.24 16 29 H 0.07 0.97 7.45 -51.93 -0.39 0.59 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.71 8.11 -51.93 -0.42 0.28 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.41 1.46 9.10 45.56 0.41 1.87 16 34 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 LS Contribution 302.96 15.07 4.57 4.57 Total: -1.00 -33.15 302.96 -7.72 -40.87 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.21 Total: 1.67 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.24 Total: -15.84 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.08 Total: -40.08 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: -0.84 Total: -11.61 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.15 -7.72 -40.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.160 kcal (2) G-P(sol) polarization free energy of solvation -33.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds