Wall clock time and date at job start Mon Mar 30 2020 03:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99831 * 180.02562 * 11 10 9 13 13 H 1.08997 * 109.47445 * 325.00257 * 12 11 10 14 14 C 1.53006 * 109.46920 * 84.99965 * 12 11 10 15 15 C 1.52998 * 109.46761 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47137 * 299.99927 * 15 14 12 17 17 H 1.08997 * 109.47125 * 299.99773 * 16 15 14 18 18 C 1.50704 * 109.46633 * 180.02562 * 16 15 14 19 19 O 1.20833 * 119.99524 * 239.99745 * 18 16 15 20 20 O 1.34222 * 120.00636 * 60.00473 * 18 16 15 21 21 C 1.52997 * 109.47199 * 60.00229 * 16 15 14 22 22 C 1.52998 * 109.46889 * 299.99922 * 21 16 15 23 23 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 25 25 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 26 26 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 27 27 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 28 28 H 1.00897 * 111.00046 * 56.04666 * 11 10 9 29 29 H 1.08998 * 109.47145 * 299.99617 * 14 12 11 30 30 H 1.09003 * 109.46734 * 60.00342 * 14 12 11 31 31 H 1.09000 * 109.47297 * 180.02562 * 15 14 12 32 32 H 1.08997 * 109.47439 * 60.00392 * 15 14 12 33 33 H 0.96699 * 117.00630 * 179.97438 * 20 18 16 34 34 H 1.08998 * 109.46911 * 179.97438 * 21 16 15 35 35 H 1.08997 * 109.46732 * 59.99929 * 21 16 15 36 36 H 1.08997 * 109.47439 * 299.99574 * 22 21 16 37 37 H 1.08997 * 109.46655 * 180.02562 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 1 3.3187 -5.8284 -0.5882 14 6 2.8530 -6.3931 1.4379 15 6 3.8154 -7.5825 1.4385 16 6 3.1202 -8.8014 0.8285 17 1 2.2369 -9.0484 1.4174 18 6 4.0680 -9.9730 0.8298 19 8 4.3781 -10.5004 -0.2123 20 8 4.5678 -10.4309 1.9883 21 6 2.7026 -8.4841 -0.6088 22 6 1.7402 -7.2947 -0.6094 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6247 -2.5571 -0.8897 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8906 28 1 0.8747 -4.9841 -0.7817 29 1 3.3479 -5.5246 1.8726 30 1 1.9696 -6.6406 2.0266 31 1 4.1126 -7.8089 2.4625 32 1 4.6987 -7.3355 0.8497 33 1 5.1714 -11.1847 1.9387 34 1 2.2078 -9.3526 -1.0434 35 1 3.5859 -8.2371 -1.1976 36 1 0.8569 -7.5417 -0.0206 37 1 1.4424 -7.0690 -1.6333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709979369.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:53 Heat of formation + Delta-G solvation = -152.216169 kcal Electronic energy + Delta-G solvation = -17205.541408 eV Core-core repulsion = 14366.000899 eV Total energy + Delta-G solvation = -2839.540509 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.58143 -39.59726 -37.20257 -36.77995 -35.09502 -32.13611 -31.73234 -29.35491 -26.02964 -24.44856 -23.90354 -22.64124 -21.73728 -20.71607 -19.02773 -18.90483 -17.74881 -16.88932 -16.77062 -16.06996 -15.79302 -15.60926 -15.12585 -14.89362 -14.57481 -14.20508 -14.12049 -13.46806 -13.22460 -13.10184 -12.86100 -12.58612 -12.46687 -12.44966 -12.11991 -12.05110 -11.95790 -11.69607 -11.49766 -11.29006 -11.12052 -10.70155 -10.54756 -9.36605 -8.69949 -6.40414 1.17118 1.53004 1.61706 1.81195 2.10945 2.56698 3.15656 3.19898 3.54922 3.65246 4.00329 4.11029 4.13549 4.32478 4.36349 4.41588 4.45987 4.49121 4.55270 4.76822 4.83185 4.88535 4.97878 5.04714 5.14733 5.19102 5.24144 5.31248 5.39543 5.46027 5.60624 5.92426 6.16215 6.20661 6.45536 6.60276 6.98644 7.42174 8.71536 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.056070 B = 0.003731 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.256471 B = 7503.305289 C = 7714.615146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.039 4.039 3 Si 1.119 2.881 4 H -0.283 1.283 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.622 4.622 8 H 0.050 0.950 9 C 0.016 3.984 10 C 0.092 3.908 11 N -0.691 5.691 12 C 0.081 3.919 13 H 0.032 0.968 14 C -0.102 4.102 15 C -0.100 4.100 16 C -0.077 4.077 17 H 0.130 0.870 18 C 0.490 3.510 19 O -0.551 6.551 20 O -0.510 6.510 21 C -0.095 4.095 22 C -0.111 4.111 23 H 0.256 0.744 24 H -0.007 1.007 25 H -0.012 1.012 26 H 0.013 0.987 27 H 0.057 0.943 28 H 0.339 0.661 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.426 0.574 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.942 -20.434 2.968 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.940 3.060 4 H -0.208 1.208 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.661 4.661 8 H 0.068 0.932 9 C -0.022 4.022 10 C -0.037 4.037 11 N -0.322 5.322 12 C -0.029 4.029 13 H 0.050 0.950 14 C -0.140 4.140 15 C -0.138 4.138 16 C -0.096 4.096 17 H 0.148 0.852 18 C 0.334 3.666 19 O -0.442 6.442 20 O -0.323 6.323 21 C -0.133 4.133 22 C -0.148 4.148 23 H 0.065 0.935 24 H 0.011 0.989 25 H 0.006 0.994 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.157 0.843 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.288 0.712 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.493 -18.636 3.400 20.372 hybrid contribution 0.683 -2.043 -1.088 2.413 sum 8.177 -20.678 2.313 22.356 Atomic orbital electron populations 1.70910 1.07960 1.29937 1.48586 1.27476 0.96612 1.06902 0.92611 0.82919 0.74113 0.70934 0.78061 1.20808 1.19298 1.19402 1.22451 0.94691 0.93471 1.55455 0.93150 1.19100 0.95020 0.93703 0.94362 1.21650 0.95218 0.88326 0.98503 1.60540 1.20243 1.01479 1.49972 1.21675 0.93888 0.90355 0.96975 0.95030 1.21472 0.99468 0.97194 0.95884 1.21455 0.97822 0.92303 1.02183 1.21143 0.97718 0.90713 1.00035 0.85245 1.23680 0.78707 0.83567 0.80597 1.90714 1.59358 1.59407 1.34755 1.84513 1.61022 1.51678 1.35125 1.21336 0.99600 0.98304 0.94038 1.21644 0.98773 0.93079 1.01353 0.93466 0.98875 0.99385 0.96837 0.92413 0.84251 0.92834 0.90592 0.89000 0.92007 0.71184 0.90248 0.92129 0.89913 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.05 13.65 21.45 0.29 -58.76 16 2 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 3 Si 1.12 50.61 29.90 68.60 2.05 52.66 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.62 -36.27 9.11 25.60 0.23 -36.04 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.02 0.83 4.54 29.85 0.14 0.97 16 10 C 0.09 3.90 5.42 86.30 0.47 4.37 16 11 N -0.69 -23.55 6.31 -491.57 -3.10 -26.66 16 12 C 0.08 2.13 2.50 44.92 0.11 2.24 16 13 H 0.03 0.90 7.80 -2.39 -0.02 0.88 16 14 C -0.10 -2.39 5.43 30.60 0.17 -2.23 16 15 C -0.10 -1.79 5.14 30.60 0.16 -1.64 16 16 C -0.08 -1.29 2.63 -11.54 -0.03 -1.32 16 17 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 18 C 0.49 8.87 7.63 71.24 0.54 9.42 16 19 O -0.55 -13.59 16.74 21.94 0.37 -13.22 16 20 O -0.51 -6.48 13.33 -51.34 -0.68 -7.17 16 21 C -0.09 -1.77 4.50 30.59 0.14 -1.63 16 22 C -0.11 -2.27 5.19 30.59 0.16 -2.11 16 23 H 0.26 16.35 7.22 -92.71 -0.67 15.68 16 24 H -0.01 -0.41 8.01 -2.39 -0.02 -0.43 16 25 H -0.01 -0.68 8.01 -2.38 -0.02 -0.70 16 26 H 0.01 0.57 8.06 -2.39 -0.02 0.55 16 27 H 0.06 2.46 7.44 -2.39 -0.02 2.44 16 28 H 0.34 11.17 8.35 -89.70 -0.75 10.42 16 29 H 0.05 1.44 7.45 -2.39 -0.02 1.42 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 1.43 8.11 -2.39 -0.02 1.41 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.43 1.91 9.10 -74.06 -0.67 1.23 16 34 H 0.08 1.41 8.10 -2.39 -0.02 1.39 16 35 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.42 8.12 -2.39 -0.02 1.40 16 Total: -1.00 -71.23 302.96 1.21 -70.02 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -0.26 Total: 12.90 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 2.54 Total: -29.78 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.81 Total: -85.42 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.32 Total: -20.39 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.05 Total: 52.66 kcal Total: -71.23 1.21 -70.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709979369.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.194 kcal (2) G-P(sol) polarization free energy of solvation -71.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds