Wall clock time and date at job start Mon Mar 30 2020 03:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.36882 * 2 1 4 4 C 1.54616 * 110.35750 * 237.70087 * 2 1 3 5 5 N 1.48564 * 104.59550 * 217.22484 * 4 2 1 6 6 C 1.46896 * 111.00028 * 159.09632 * 5 4 2 7 7 C 1.53004 * 109.47166 * 59.85047 * 6 5 4 8 8 C 1.50697 * 109.47448 * 174.90746 * 7 6 5 9 9 H 1.08001 * 119.99425 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00494 * 179.97438 * 8 7 6 11 11 N 1.31523 * 119.99626 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00291 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46929 * 90.00132 * 12 10 8 14 14 H 1.48495 * 109.47300 * 209.99913 * 12 10 8 15 15 H 1.48492 * 109.47292 * 330.00510 * 12 10 8 16 16 C 1.48554 * 104.22285 * 39.53475 * 5 4 2 17 17 C 1.54263 * 110.32317 * 122.18119 * 2 1 3 18 18 H 1.08998 * 110.32692 * 237.89309 * 17 2 1 19 19 C 1.50706 * 110.32249 * 0.02562 * 17 2 1 20 20 O 1.20826 * 120.00038 * 85.74977 * 19 17 2 21 21 O 1.34222 * 119.99795 * 266.01928 * 19 17 2 22 22 H 1.08997 * 109.46981 * 298.80094 * 1 2 3 23 23 H 1.09004 * 109.46848 * 58.80395 * 1 2 3 24 24 H 1.09006 * 109.46890 * 178.79986 * 1 2 3 25 25 H 1.09003 * 109.46841 * 182.17675 * 3 2 1 26 26 H 1.08990 * 109.46976 * 302.18244 * 3 2 1 27 27 H 1.08998 * 109.46898 * 62.18149 * 3 2 1 28 28 H 1.08996 * 110.36207 * 98.46452 * 4 2 1 29 29 H 1.08997 * 110.55703 * 336.07627 * 4 2 1 30 30 H 1.08995 * 109.47375 * 179.84442 * 6 5 4 31 31 H 1.08998 * 109.47363 * 299.85342 * 6 5 4 32 32 H 1.09004 * 109.47253 * 294.91067 * 7 6 5 33 33 H 1.09002 * 109.47071 * 54.90865 * 7 6 5 34 34 H 0.96997 * 119.99684 * 180.02562 * 11 10 8 35 35 H 1.09003 * 110.41168 * 201.73575 * 16 5 4 36 36 H 1.09007 * 110.41015 * 79.29849 * 16 5 4 37 37 H 0.96706 * 116.99509 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4343 0.0000 4 6 2.0679 -0.7746 -1.2253 5 7 3.2714 -1.4845 -0.7206 6 6 3.6106 -2.6242 -1.5831 7 6 3.8910 -2.1245 -3.0018 8 6 4.3598 -3.2741 -3.8559 9 1 4.4486 -4.2624 -3.4295 10 6 4.6745 -3.0645 -5.1817 11 7 4.5659 -1.8611 -5.7010 12 14 5.2564 -4.4895 -6.2402 13 1 4.0853 -5.1423 -6.8787 14 1 6.1746 -3.9826 -7.2914 15 1 5.9716 -5.4764 -5.3920 16 6 2.8823 -1.9422 0.6380 17 6 2.0658 -0.7705 1.2244 18 1 2.7067 -0.1263 1.8263 19 6 0.9223 -1.2938 2.0549 20 8 0.4138 -2.3554 1.7821 21 8 0.4652 -0.5781 3.0943 22 1 -0.3633 0.4951 0.9005 23 1 -0.3633 0.5323 -0.8791 24 1 -0.3633 -1.0275 -0.0215 25 1 3.1517 1.4175 -0.0390 26 1 1.6759 1.9654 -0.8697 27 1 1.7394 1.9418 0.9089 28 1 2.3408 -0.0823 -2.0217 29 1 1.3264 -1.4895 -1.5818 30 1 4.4968 -3.1243 -1.1925 31 1 2.7766 -3.3256 -1.6032 32 1 2.9788 -1.7050 -3.4262 33 1 4.6637 -1.3564 -2.9704 34 1 4.7869 -1.7137 -6.6339 35 1 3.7684 -2.1291 1.2446 36 1 2.2673 -2.8400 0.5751 37 1 -0.2701 -0.9547 3.5971 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709999829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:02 Heat of formation + Delta-G solvation = -103.621167 kcal Electronic energy + Delta-G solvation = -17995.058032 eV Core-core repulsion = 15157.624761 eV Total energy + Delta-G solvation = -2837.433271 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.94783 -38.64887 -36.15767 -34.72213 -32.80099 -30.75676 -28.85933 -27.37039 -25.79524 -24.69215 -22.71258 -21.02275 -19.98770 -18.98125 -18.12139 -16.55919 -16.36018 -15.94197 -15.03763 -14.71182 -14.47323 -13.93633 -13.43327 -13.34299 -12.98196 -12.93135 -12.46355 -12.12907 -12.03776 -11.69730 -11.52428 -11.38035 -11.06131 -10.96281 -10.89428 -10.71528 -10.51987 -10.37367 -10.36004 -9.88259 -9.36514 -9.12788 -8.33985 -7.93313 -5.99020 -4.01231 2.12615 2.92356 3.33229 3.39371 3.43001 4.42466 4.46691 4.49344 4.64151 4.93455 5.14871 5.32284 5.34149 5.37173 5.38180 5.61230 5.74531 5.88684 5.93255 5.97253 5.99301 6.08097 6.15031 6.27889 6.36926 6.38119 6.41874 6.49844 6.92456 7.33411 7.41275 7.72640 7.81985 7.88149 8.06343 8.43568 9.05523 9.62502 11.12456 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041844 B = 0.005147 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.989360 B = 5438.642078 C = 5750.556801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.054 4.054 3 C -0.133 4.133 4 C 0.046 3.954 5 N -0.505 5.505 6 C 0.051 3.949 7 C 0.027 3.973 8 C -0.521 4.521 9 H 0.054 0.946 10 C 0.059 3.941 11 N -0.894 5.894 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.038 3.962 17 C -0.081 4.081 18 H 0.110 0.890 19 C 0.492 3.508 20 O -0.514 6.514 21 O -0.518 6.518 22 H 0.058 0.942 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.016 0.984 33 H 0.026 0.974 34 H 0.260 0.740 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 5.620 15.334 18.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.054 4.054 3 C -0.191 4.191 4 C -0.082 4.082 5 N -0.229 5.229 6 C -0.076 4.076 7 C -0.010 4.010 8 C -0.560 4.560 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.090 4.090 17 C -0.101 4.101 18 H 0.128 0.872 19 C 0.334 3.666 20 O -0.402 6.402 21 O -0.329 6.329 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.887 5.920 14.863 17.418 hybrid contribution -0.914 -1.627 -0.337 1.897 sum -7.801 4.293 14.526 17.038 Atomic orbital electron populations 1.22150 0.94284 1.02596 1.02436 1.21318 0.95127 0.96106 0.92887 1.21841 1.02162 0.93446 1.01618 1.23247 0.91664 0.97435 0.95822 1.65553 1.31592 1.24717 1.00993 1.22531 0.98908 0.90240 0.95906 1.19098 0.97294 0.96821 0.87800 1.21186 1.44668 0.95082 0.95090 0.92754 1.24983 0.95664 0.95610 0.98001 1.69972 1.48988 1.20643 1.13702 0.86591 0.78638 0.82562 0.80194 1.20724 1.21194 1.19868 1.23139 0.98097 0.95008 0.92788 1.21976 0.93178 0.99539 0.95431 0.87185 1.23375 0.83507 0.81856 0.77833 1.90715 1.57784 1.23250 1.68423 1.84581 1.52395 1.53262 1.42684 0.92351 0.91355 0.91938 0.91182 0.92025 0.92751 0.89058 0.93465 0.91605 0.95836 0.96603 0.95544 0.93012 0.89785 0.92140 0.73639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 7.28 37.16 0.27 -1.65 16 2 C -0.05 -0.71 1.03 -153.00 -0.16 -0.87 16 3 C -0.13 -1.54 8.24 37.16 0.31 -1.23 16 4 C 0.05 0.79 4.46 -2.05 -0.01 0.78 16 5 N -0.50 -9.23 5.45 -229.82 -1.25 -10.48 16 6 C 0.05 1.10 4.86 -3.82 -0.02 1.09 16 7 C 0.03 0.71 4.70 -27.88 -0.13 0.58 16 8 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 9 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 12 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 C 0.04 0.59 5.99 -2.18 -0.01 0.57 16 17 C -0.08 -1.06 3.20 -90.38 -0.29 -1.34 16 18 H 0.11 1.24 7.71 -51.93 -0.40 0.84 16 19 C 0.49 6.22 5.26 36.01 0.19 6.41 16 20 O -0.51 -8.05 15.63 -18.75 -0.29 -8.34 16 21 O -0.52 -4.86 13.16 -39.24 -0.52 -5.38 16 22 H 0.06 0.63 7.38 -51.93 -0.38 0.24 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.87 6.87 -51.93 -0.36 0.51 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 1.65 7.51 -51.93 -0.39 1.26 16 29 H 0.05 0.86 7.68 -51.93 -0.40 0.46 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.02 0.51 7.97 -51.93 -0.41 0.10 16 32 H 0.02 0.43 7.21 -51.93 -0.37 0.06 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.02 6.65 -51.92 -0.35 0.68 16 37 H 0.41 2.09 9.10 45.56 0.41 2.50 16 LS Contribution 299.11 15.07 4.51 4.51 Total: -1.00 -32.15 299.11 -7.25 -39.40 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.15 Total: -1.02 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -0.26 Total: -9.28 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.52 Total: -36.66 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.81 Total: -13.72 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.15 -7.25 -39.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709999829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.217 kcal (2) G-P(sol) polarization free energy of solvation -32.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds