Wall clock time and date at job start Mon Mar 30 2020 03:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.36882 * 2 1 4 4 C 1.54616 * 110.35750 * 237.70087 * 2 1 3 5 5 N 1.48564 * 104.59550 * 217.22484 * 4 2 1 6 6 C 1.46896 * 111.00028 * 159.09632 * 5 4 2 7 7 C 1.53004 * 109.47166 * 59.85047 * 6 5 4 8 8 C 1.50697 * 109.47448 * 174.90746 * 7 6 5 9 9 H 1.08001 * 119.99425 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00494 * 179.97438 * 8 7 6 11 11 N 1.31523 * 119.99626 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 120.00291 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46929 * 90.00132 * 12 10 8 14 14 H 1.48495 * 109.47300 * 209.99913 * 12 10 8 15 15 H 1.48492 * 109.47292 * 330.00510 * 12 10 8 16 16 C 1.48554 * 104.22285 * 39.53475 * 5 4 2 17 17 C 1.54263 * 110.32317 * 122.18119 * 2 1 3 18 18 H 1.08998 * 110.32692 * 237.89309 * 17 2 1 19 19 C 1.50706 * 110.32249 * 0.02562 * 17 2 1 20 20 O 1.20826 * 120.00038 * 85.74977 * 19 17 2 21 21 O 1.34222 * 119.99795 * 266.01928 * 19 17 2 22 22 H 1.08997 * 109.46981 * 298.80094 * 1 2 3 23 23 H 1.09004 * 109.46848 * 58.80395 * 1 2 3 24 24 H 1.09006 * 109.46890 * 178.79986 * 1 2 3 25 25 H 1.09003 * 109.46841 * 182.17675 * 3 2 1 26 26 H 1.08990 * 109.46976 * 302.18244 * 3 2 1 27 27 H 1.08998 * 109.46898 * 62.18149 * 3 2 1 28 28 H 1.08996 * 110.36207 * 98.46452 * 4 2 1 29 29 H 1.08997 * 110.55703 * 336.07627 * 4 2 1 30 30 H 1.08995 * 109.47375 * 179.84442 * 6 5 4 31 31 H 1.08998 * 109.47363 * 299.85342 * 6 5 4 32 32 H 1.09004 * 109.47253 * 294.91067 * 7 6 5 33 33 H 1.09002 * 109.47071 * 54.90865 * 7 6 5 34 34 H 0.96997 * 119.99684 * 180.02562 * 11 10 8 35 35 H 1.09003 * 110.41168 * 201.73575 * 16 5 4 36 36 H 1.09007 * 110.41015 * 79.29849 * 16 5 4 37 37 H 0.96706 * 116.99509 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4343 0.0000 4 6 2.0679 -0.7746 -1.2253 5 7 3.2714 -1.4845 -0.7206 6 6 3.6106 -2.6242 -1.5831 7 6 3.8910 -2.1245 -3.0018 8 6 4.3598 -3.2741 -3.8559 9 1 4.4486 -4.2624 -3.4295 10 6 4.6745 -3.0645 -5.1817 11 7 4.5659 -1.8611 -5.7010 12 14 5.2564 -4.4895 -6.2402 13 1 4.0853 -5.1423 -6.8787 14 1 6.1746 -3.9826 -7.2914 15 1 5.9716 -5.4764 -5.3920 16 6 2.8823 -1.9422 0.6380 17 6 2.0658 -0.7705 1.2244 18 1 2.7067 -0.1263 1.8263 19 6 0.9223 -1.2938 2.0549 20 8 0.4138 -2.3554 1.7821 21 8 0.4652 -0.5781 3.0943 22 1 -0.3633 0.4951 0.9005 23 1 -0.3633 0.5323 -0.8791 24 1 -0.3633 -1.0275 -0.0215 25 1 3.1517 1.4175 -0.0390 26 1 1.6759 1.9654 -0.8697 27 1 1.7394 1.9418 0.9089 28 1 2.3408 -0.0823 -2.0217 29 1 1.3264 -1.4895 -1.5818 30 1 4.4968 -3.1243 -1.1925 31 1 2.7766 -3.3256 -1.6032 32 1 2.9788 -1.7050 -3.4262 33 1 4.6637 -1.3564 -2.9704 34 1 4.7869 -1.7137 -6.6339 35 1 3.7684 -2.1291 1.2446 36 1 2.2673 -2.8400 0.5751 37 1 -0.2701 -0.9547 3.5971 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709999829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:02 Heat of formation + Delta-G solvation = -126.628840 kcal Electronic energy + Delta-G solvation = -17996.055720 eV Core-core repulsion = 15157.624761 eV Total energy + Delta-G solvation = -2838.430959 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.01221 -39.83040 -37.08692 -36.30329 -34.73932 -32.23136 -30.51244 -28.33925 -27.32556 -26.26342 -24.21781 -22.32628 -21.64226 -20.07917 -19.08239 -18.49226 -17.60588 -17.08317 -16.53097 -16.32563 -16.03472 -15.27138 -14.82992 -14.43189 -14.35796 -14.21063 -13.84252 -13.82159 -13.35663 -12.95317 -12.88408 -12.70071 -12.64830 -12.48159 -12.36160 -12.08109 -11.87623 -11.72803 -11.54275 -11.41699 -11.36145 -11.25252 -10.56259 -9.47016 -8.21019 -6.32337 1.13878 1.39904 1.41298 1.52608 2.01216 2.40320 3.12482 3.16773 3.32552 3.42047 3.84877 4.11409 4.21844 4.25483 4.36684 4.45355 4.49209 4.64698 4.67573 4.69824 4.82843 4.87887 4.97223 5.01662 5.03312 5.14001 5.22926 5.42461 5.45325 5.56956 5.59707 5.76067 5.88935 6.04859 6.26964 6.83532 6.99444 7.36717 8.91135 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.041844 B = 0.005147 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.989360 B = 5438.642078 C = 5750.556801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.047 4.047 3 C -0.129 4.129 4 C 0.044 3.956 5 N -0.511 5.511 6 C 0.067 3.933 7 C 0.038 3.962 8 C -0.547 4.547 9 H 0.058 0.942 10 C 0.004 3.996 11 N -0.930 5.930 12 Si 0.966 3.034 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.264 1.264 16 C 0.037 3.963 17 C -0.078 4.078 18 H 0.137 0.863 19 C 0.503 3.497 20 O -0.549 6.549 21 O -0.503 6.503 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.016 0.984 32 H -0.008 1.008 33 H -0.001 1.001 34 H 0.264 0.736 35 H 0.102 0.898 36 H 0.044 0.956 37 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 5.829 16.820 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.048 4.048 3 C -0.186 4.186 4 C -0.084 4.084 5 N -0.234 5.234 6 C -0.061 4.061 7 C 0.001 3.999 8 C -0.586 4.586 9 H 0.076 0.924 10 C -0.194 4.194 11 N -0.570 5.570 12 Si 0.790 3.210 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.188 1.188 16 C -0.091 4.091 17 C -0.098 4.098 18 H 0.155 0.845 19 C 0.346 3.654 20 O -0.440 6.440 21 O -0.317 6.317 22 H 0.099 0.901 23 H 0.092 0.908 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.034 0.966 32 H 0.010 0.990 33 H 0.017 0.983 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.062 0.938 37 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -7.078 6.144 16.390 18.881 hybrid contribution -0.896 -1.640 -0.752 2.014 sum -7.974 4.504 15.638 18.122 Atomic orbital electron populations 1.22101 0.93250 1.01699 1.03866 1.21282 0.95877 0.96676 0.90938 1.21816 1.01496 0.92160 1.03132 1.23241 0.90794 0.96965 0.97440 1.65467 1.32630 1.23332 1.01995 1.22169 0.98775 0.91031 0.94081 1.18891 0.95042 0.95548 0.90445 1.21611 1.45092 0.95809 0.96050 0.92369 1.25931 0.95517 0.98534 0.99437 1.70101 1.49679 1.22918 1.14280 0.85438 0.78352 0.78989 0.78209 1.19877 1.20480 1.18776 1.23173 0.99109 0.95550 0.91245 1.21935 0.93622 0.98570 0.95655 0.84524 1.23115 0.82943 0.81230 0.78085 1.90721 1.58834 1.24879 1.69540 1.84511 1.53165 1.52413 1.41592 0.90079 0.90779 0.93937 0.92110 0.91862 0.89998 0.90936 0.95568 0.91316 0.96567 0.98957 0.98296 0.92687 0.87983 0.93818 0.71106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 7.28 71.98 0.52 -2.95 16 2 C -0.05 -1.19 1.03 -51.20 -0.05 -1.24 16 3 C -0.13 -2.70 8.24 71.98 0.59 -2.10 16 4 C 0.04 1.54 4.46 86.53 0.39 1.92 16 5 N -0.51 -19.00 5.45 -881.02 -4.80 -23.80 16 6 C 0.07 3.00 4.86 86.31 0.42 3.42 16 7 C 0.04 2.08 4.70 29.85 0.14 2.22 16 8 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 9 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 10 C 0.00 0.23 5.46 84.65 0.46 0.69 16 11 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 12 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 15 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 16 C 0.04 1.12 5.99 86.45 0.52 1.64 16 17 C -0.08 -1.87 3.20 -10.64 -0.03 -1.90 16 18 H 0.14 2.58 7.71 -2.39 -0.02 2.56 16 19 C 0.50 11.54 5.26 71.24 0.38 11.91 16 20 O -0.55 -16.62 15.63 21.96 0.34 -16.27 16 21 O -0.50 -7.59 13.16 -51.34 -0.68 -8.26 16 22 H 0.08 1.49 7.38 -2.39 -0.02 1.47 16 23 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.04 1.15 6.87 -2.38 -0.02 1.13 16 25 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 2.77 7.51 -2.39 -0.02 2.75 16 29 H 0.03 1.01 7.68 -2.39 -0.02 0.99 16 30 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.02 0.73 7.97 -2.39 -0.02 0.71 16 32 H -0.01 -0.46 7.21 -2.38 -0.02 -0.48 16 33 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.04 1.49 6.65 -2.38 -0.02 1.47 16 37 H 0.43 2.81 9.10 -74.05 -0.67 2.14 16 Total: -1.00 -70.59 299.11 1.12 -69.47 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.38 Total: 6.96 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 3.56 Total: -18.11 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -4.51 Total: -80.69 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.33 Total: -24.54 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -70.59 1.12 -69.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709999829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.161 kcal (2) G-P(sol) polarization free energy of solvation -70.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds