Wall clock time and date at job start Mon Mar 30 2020 03:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.46900 * 2 1 4 4 C 1.53004 * 109.46970 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.49569 * 64.93615 * 4 3 2 6 6 C 1.53045 * 109.49415 * 184.99564 * 4 3 2 7 7 C 1.53048 * 109.53463 * 181.32085 * 6 4 3 8 8 C 1.53198 * 109.30630 * 298.63497 * 7 6 4 9 9 N 1.46921 * 108.77796 * 54.63991 * 8 7 6 10 10 C 1.34771 * 120.63232 * 126.36731 * 9 8 7 11 11 O 1.21688 * 120.00177 * 354.82179 * 10 9 8 12 12 C 1.46378 * 119.99866 * 175.09546 * 10 9 8 13 13 H 1.07997 * 120.00206 * 342.19458 * 12 10 9 14 14 C 1.40048 * 119.99766 * 162.19628 * 12 10 9 15 15 N 1.30672 * 120.00145 * 170.19479 * 14 12 10 16 16 Si 1.86801 * 120.00139 * 350.19222 * 14 12 10 17 17 H 1.48498 * 109.46969 * 84.76493 * 16 14 12 18 18 H 1.48508 * 109.47264 * 204.76417 * 16 14 12 19 19 H 1.48495 * 109.47071 * 324.76569 * 16 14 12 20 20 C 1.46928 * 118.73732 * 306.63856 * 9 8 7 21 21 H 1.09005 * 109.46846 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47713 * 300.00169 * 1 2 3 23 23 H 1.09007 * 109.46937 * 60.00804 * 1 2 3 24 24 H 1.08994 * 109.47563 * 239.99310 * 2 1 3 25 25 H 1.09004 * 109.46461 * 119.99059 * 2 1 3 26 26 H 1.08994 * 109.47576 * 59.99318 * 3 2 1 27 27 H 1.09000 * 109.46934 * 299.99595 * 3 2 1 28 28 H 0.96708 * 114.00066 * 300.06025 * 5 4 3 29 29 H 1.08992 * 109.46234 * 61.29892 * 6 4 3 30 30 H 1.08996 * 109.45177 * 301.32602 * 6 4 3 31 31 H 1.08991 * 109.49748 * 178.68651 * 7 6 4 32 32 H 1.08993 * 109.49939 * 58.58100 * 7 6 4 33 33 H 1.09000 * 109.58817 * 294.84507 * 8 7 6 34 34 H 1.08999 * 109.58017 * 174.42631 * 8 7 6 35 35 H 0.96996 * 120.00329 * 179.97438 * 15 14 12 36 36 H 1.08994 * 109.58721 * 173.14922 * 20 9 8 37 37 H 1.09003 * 109.58410 * 293.57327 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0474 0.8716 -1.2193 6 6 4.0806 2.8797 0.1263 7 6 5.6108 2.8838 0.0939 8 6 6.1447 2.0754 1.2807 9 7 5.5441 0.7349 1.2482 10 6 6.3206 -0.3663 1.2745 11 8 7.5319 -0.2579 1.2304 12 6 5.7068 -1.6930 1.3501 13 1 4.6805 -1.7957 1.6701 14 6 6.4505 -2.8291 1.0075 15 7 5.9744 -4.0207 1.2544 16 14 8.1232 -2.6412 0.1974 17 1 9.1602 -2.4462 1.2423 18 1 8.4339 -3.8638 -0.5863 19 1 8.1054 -1.4642 -0.7079 20 6 4.0810 0.6178 1.1805 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 1.8934 -0.5139 -0.8898 25 1 1.8933 -0.5137 0.8901 26 1 1.6766 1.9563 0.8898 27 1 1.6766 1.9562 -0.8900 28 1 3.7616 -0.0407 -1.3650 29 1 3.7362 3.3065 1.0682 30 1 3.6984 3.4745 -0.7032 31 1 5.9733 3.9096 0.1599 32 1 5.9562 2.4346 -0.8371 33 1 5.8766 2.5736 2.2123 34 1 7.2290 1.9919 1.2075 35 1 6.4893 -4.8076 1.0168 36 1 3.8042 -0.4272 1.0415 37 1 3.6412 0.9947 2.1039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710194039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:22 Heat of formation + Delta-G solvation = -113.797186 kcal Electronic energy + Delta-G solvation = -18678.254296 eV Core-core repulsion = 15840.379759 eV Total energy + Delta-G solvation = -2837.874537 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.59241 -37.32230 -34.79694 -33.81260 -32.79750 -31.89081 -30.08057 -26.92500 -25.95177 -24.58176 -22.57464 -20.71121 -19.90682 -18.97928 -17.09395 -16.07066 -15.79070 -15.39382 -14.66597 -14.48251 -14.24432 -14.06921 -13.38411 -13.00180 -12.78107 -12.68012 -12.25848 -12.19152 -12.06352 -11.69360 -11.60648 -11.23693 -11.09525 -10.89309 -10.62133 -10.52249 -10.44923 -10.32086 -10.01496 -9.50679 -9.37823 -8.99380 -7.90151 -7.43332 -6.61050 -4.81102 3.47592 3.49843 3.72799 4.15757 4.29315 4.55772 4.61737 4.79107 5.02138 5.07384 5.25962 5.34601 5.41069 5.46630 5.54086 5.70331 5.79922 5.83453 5.89816 5.95813 6.03905 6.09057 6.17183 6.21736 6.30550 6.35692 6.40844 6.47022 6.52984 6.78917 7.11226 7.67178 7.88693 8.11592 8.32493 8.74436 9.17835 10.07962 10.40198 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022449 B = 0.009526 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.976076 B = 2938.721591 C = 3784.447404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.140 4.140 4 C 0.118 3.882 5 O -0.550 6.550 6 C -0.100 4.100 7 C -0.129 4.129 8 C 0.117 3.883 9 N -0.623 5.623 10 C 0.559 3.441 11 O -0.617 6.617 12 C -0.535 4.535 13 H 0.088 0.912 14 C 0.104 3.896 15 N -0.830 5.830 16 Si 0.961 3.039 17 H -0.277 1.277 18 H -0.320 1.320 19 H -0.266 1.266 20 C 0.097 3.903 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.375 0.625 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.281 0.719 36 H 0.103 0.897 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.661 9.804 -2.482 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C -0.178 4.178 4 C 0.076 3.924 5 O -0.357 6.357 6 C -0.137 4.137 7 C -0.168 4.168 8 C -0.007 4.007 9 N -0.356 5.356 10 C 0.368 3.632 11 O -0.509 6.509 12 C -0.570 4.570 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.460 5.460 16 Si 0.793 3.207 17 H -0.203 1.203 18 H -0.251 1.251 19 H -0.191 1.191 20 C -0.027 4.027 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.223 0.777 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.805 10.255 -2.521 13.750 hybrid contribution 0.176 -0.510 -0.173 0.566 sum -8.630 9.745 -2.693 13.292 Atomic orbital electron populations 1.21737 0.95958 1.01548 1.01337 1.21640 0.95865 0.96712 1.02964 1.22243 0.95643 0.97514 1.02444 1.21516 0.91254 0.93988 0.85662 1.86489 1.77399 1.32243 1.39550 1.21449 0.96649 0.94254 1.01392 1.21831 0.95031 0.99337 1.00579 1.21255 0.99751 0.83932 0.95780 1.47540 1.05069 1.04960 1.78072 1.18320 0.85324 0.84452 0.75122 1.90214 1.15448 1.85613 1.59593 1.20697 1.01033 0.87924 1.47376 0.89439 1.25699 0.99848 0.93956 0.91820 1.69560 1.39355 0.98869 1.38246 0.85324 0.81118 0.74681 0.79531 1.20343 1.25126 1.19142 1.22123 0.82261 1.02178 0.96156 0.92735 0.92953 0.93099 0.91715 0.90911 0.91332 0.91432 0.77698 0.91272 0.91944 0.92114 0.90808 0.93828 0.89713 0.90882 0.87924 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.13 -1.61 5.24 -26.73 -0.14 -1.75 16 3 C -0.14 -1.69 4.51 -26.73 -0.12 -1.81 16 4 C 0.12 1.79 0.75 -90.72 -0.07 1.72 16 5 O -0.55 -9.50 12.16 -35.23 -0.43 -9.92 16 6 C -0.10 -1.42 4.92 -26.68 -0.13 -1.55 16 7 C -0.13 -2.09 5.94 -26.60 -0.16 -2.24 16 8 C 0.12 2.23 6.44 -3.71 -0.02 2.20 16 9 N -0.62 -13.73 2.92 -174.70 -0.51 -14.24 16 10 C 0.56 15.13 7.21 -12.99 -0.09 15.03 16 11 O -0.62 -18.34 12.12 5.20 0.06 -18.28 16 12 C -0.53 -14.94 9.08 -35.63 -0.32 -15.26 16 13 H 0.09 2.41 6.43 -52.49 -0.34 2.07 16 14 C 0.10 2.97 5.52 -17.37 -0.10 2.88 16 15 N -0.83 -23.43 13.92 55.55 0.77 -22.66 16 16 Si 0.96 25.74 25.83 -169.99 -4.39 21.35 16 17 H -0.28 -7.69 7.11 56.52 0.40 -7.29 16 18 H -0.32 -8.08 7.11 56.52 0.40 -7.68 16 19 H -0.27 -7.51 6.82 56.52 0.39 -7.13 16 20 C 0.10 1.76 4.48 -3.93 -0.02 1.74 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 24 H 0.06 0.79 6.88 -51.93 -0.36 0.43 16 25 H 0.07 0.96 6.48 -51.93 -0.34 0.62 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.37 5.86 7.52 45.56 0.34 6.20 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.38 7.61 -51.93 -0.40 0.98 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.79 6.99 -51.93 -0.36 1.43 16 35 H 0.28 7.34 8.29 -40.82 -0.34 7.00 16 36 H 0.10 1.99 4.16 -51.93 -0.22 1.77 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 287.79 15.07 4.34 4.34 Total: -1.00 -32.29 287.79 -6.00 -38.29 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.04 Total: 1.31 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -0.80 Total: -0.19 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.26 Total: -36.90 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.37 Total: -28.20 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -4.39 Total: 21.35 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.29 -6.00 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710194039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.504 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds