Wall clock time and date at job start Mon Mar 30 2020 03:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.46900 * 2 1 4 4 C 1.53004 * 109.46970 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.49569 * 64.93615 * 4 3 2 6 6 C 1.53045 * 109.49415 * 184.99564 * 4 3 2 7 7 C 1.53048 * 109.53463 * 181.32085 * 6 4 3 8 8 C 1.53198 * 109.30630 * 298.63497 * 7 6 4 9 9 N 1.46921 * 108.77796 * 54.63991 * 8 7 6 10 10 C 1.34771 * 120.63232 * 126.36731 * 9 8 7 11 11 O 1.21688 * 120.00177 * 354.82179 * 10 9 8 12 12 C 1.46378 * 119.99866 * 175.09546 * 10 9 8 13 13 H 1.07997 * 120.00206 * 342.19458 * 12 10 9 14 14 C 1.40048 * 119.99766 * 162.19628 * 12 10 9 15 15 N 1.30672 * 120.00145 * 170.19479 * 14 12 10 16 16 Si 1.86801 * 120.00139 * 350.19222 * 14 12 10 17 17 H 1.48498 * 109.46969 * 84.76493 * 16 14 12 18 18 H 1.48508 * 109.47264 * 204.76417 * 16 14 12 19 19 H 1.48495 * 109.47071 * 324.76569 * 16 14 12 20 20 C 1.46928 * 118.73732 * 306.63856 * 9 8 7 21 21 H 1.09005 * 109.46846 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47713 * 300.00169 * 1 2 3 23 23 H 1.09007 * 109.46937 * 60.00804 * 1 2 3 24 24 H 1.08994 * 109.47563 * 239.99310 * 2 1 3 25 25 H 1.09004 * 109.46461 * 119.99059 * 2 1 3 26 26 H 1.08994 * 109.47576 * 59.99318 * 3 2 1 27 27 H 1.09000 * 109.46934 * 299.99595 * 3 2 1 28 28 H 0.96708 * 114.00066 * 300.06025 * 5 4 3 29 29 H 1.08992 * 109.46234 * 61.29892 * 6 4 3 30 30 H 1.08996 * 109.45177 * 301.32602 * 6 4 3 31 31 H 1.08991 * 109.49748 * 178.68651 * 7 6 4 32 32 H 1.08993 * 109.49939 * 58.58100 * 7 6 4 33 33 H 1.09000 * 109.58817 * 294.84507 * 8 7 6 34 34 H 1.08999 * 109.58017 * 174.42631 * 8 7 6 35 35 H 0.96996 * 120.00329 * 179.97438 * 15 14 12 36 36 H 1.08994 * 109.58721 * 173.14922 * 20 9 8 37 37 H 1.09003 * 109.58410 * 293.57327 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0474 0.8716 -1.2193 6 6 4.0806 2.8797 0.1263 7 6 5.6108 2.8838 0.0939 8 6 6.1447 2.0754 1.2807 9 7 5.5441 0.7349 1.2482 10 6 6.3206 -0.3663 1.2745 11 8 7.5319 -0.2579 1.2304 12 6 5.7068 -1.6930 1.3501 13 1 4.6805 -1.7957 1.6701 14 6 6.4505 -2.8291 1.0075 15 7 5.9744 -4.0207 1.2544 16 14 8.1232 -2.6412 0.1974 17 1 9.1602 -2.4462 1.2423 18 1 8.4339 -3.8638 -0.5863 19 1 8.1054 -1.4642 -0.7079 20 6 4.0810 0.6178 1.1805 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 1.8934 -0.5139 -0.8898 25 1 1.8933 -0.5137 0.8901 26 1 1.6766 1.9563 0.8898 27 1 1.6766 1.9562 -0.8900 28 1 3.7616 -0.0407 -1.3650 29 1 3.7362 3.3065 1.0682 30 1 3.6984 3.4745 -0.7032 31 1 5.9733 3.9096 0.1599 32 1 5.9562 2.4346 -0.8371 33 1 5.8766 2.5736 2.2123 34 1 7.2290 1.9919 1.2075 35 1 6.4893 -4.8076 1.0168 36 1 3.8042 -0.4272 1.0415 37 1 3.6412 0.9947 2.1039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710194039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:22 Heat of formation + Delta-G solvation = -137.288794 kcal Electronic energy + Delta-G solvation = -18679.272968 eV Core-core repulsion = 15840.379759 eV Total energy + Delta-G solvation = -2838.893209 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.05675 -39.12117 -36.32961 -34.98565 -34.89559 -33.44092 -31.32709 -28.86362 -27.16790 -26.12753 -23.88141 -21.99224 -21.23907 -20.60180 -18.96129 -18.00874 -17.32825 -16.85665 -16.30280 -15.88501 -15.59273 -15.43517 -15.01725 -14.58769 -14.49758 -13.95133 -13.87605 -13.64102 -13.58011 -13.13918 -12.96564 -12.71265 -12.55246 -12.43528 -12.12812 -11.88650 -11.82912 -11.66224 -11.47770 -11.22482 -11.03224 -10.73766 -10.01798 -9.18959 -8.80283 -6.98804 1.29869 1.32430 1.55138 2.07381 2.31849 2.68420 3.27261 3.45352 3.68623 3.89274 3.99288 4.15569 4.21444 4.25549 4.35956 4.57982 4.62387 4.75621 4.84623 4.85696 4.88298 4.92247 4.96176 5.03272 5.15681 5.18335 5.25602 5.32949 5.40815 5.47110 5.51351 5.68542 5.99799 6.24477 6.63246 6.86446 7.16021 7.99513 8.25550 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.022449 B = 0.009526 C = 0.007397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.976076 B = 2938.721591 C = 3784.447404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C -0.127 4.127 4 C 0.117 3.883 5 O -0.570 6.570 6 C -0.098 4.098 7 C -0.122 4.122 8 C 0.110 3.890 9 N -0.624 5.624 10 C 0.551 3.449 11 O -0.652 6.652 12 C -0.547 4.547 13 H 0.085 0.915 14 C 0.076 3.924 15 N -0.847 5.847 16 Si 1.002 2.998 17 H -0.294 1.294 18 H -0.294 1.294 19 H -0.293 1.293 20 C 0.092 3.908 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.377 0.623 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.291 0.709 36 H 0.083 0.917 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.359 11.535 -2.547 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C -0.165 4.165 4 C 0.076 3.924 5 O -0.377 6.377 6 C -0.136 4.136 7 C -0.160 4.160 8 C -0.013 4.013 9 N -0.355 5.355 10 C 0.358 3.642 11 O -0.547 6.547 12 C -0.583 4.583 13 H 0.103 0.897 14 C -0.140 4.140 15 N -0.478 5.478 16 Si 0.835 3.165 17 H -0.222 1.222 18 H -0.223 1.223 19 H -0.220 1.220 20 C -0.031 4.031 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.226 0.774 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.550 11.987 -2.592 16.177 hybrid contribution 0.677 -0.989 -0.112 1.203 sum -9.873 10.998 -2.704 15.025 Atomic orbital electron populations 1.21704 0.94320 1.01841 1.02322 1.21634 0.97294 0.96693 1.01777 1.22139 0.92795 0.97615 1.03970 1.21672 0.93380 0.93951 0.83428 1.86477 1.78108 1.32601 1.40555 1.21534 0.94757 0.93621 1.03663 1.21755 0.96785 1.00131 0.97313 1.21492 0.98164 0.82961 0.98688 1.47537 1.06639 1.04948 1.76397 1.18337 0.85147 0.85679 0.75039 1.90181 1.16957 1.86467 1.61053 1.20873 1.01041 0.88754 1.47624 0.89696 1.26094 1.01246 0.94242 0.92426 1.69549 1.40137 0.99196 1.38868 0.84768 0.79148 0.74391 0.78166 1.22165 1.22303 1.22039 1.22363 0.79848 1.02128 0.98756 0.92894 0.91962 0.92070 0.92565 0.92617 0.89335 0.90189 0.77420 0.88527 0.90052 0.88798 0.94014 0.90923 0.92655 0.89855 0.89834 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.91 71.98 0.71 -1.88 16 2 C -0.14 -3.04 5.24 30.59 0.16 -2.88 16 3 C -0.13 -2.65 4.51 30.59 0.14 -2.51 16 4 C 0.12 3.28 0.75 -10.86 -0.01 3.27 16 5 O -0.57 -19.22 12.16 -148.98 -1.81 -21.03 16 6 C -0.10 -2.41 4.92 30.63 0.15 -2.26 16 7 C -0.12 -3.64 5.94 30.68 0.18 -3.46 16 8 C 0.11 4.06 6.44 86.37 0.56 4.62 16 9 N -0.62 -27.25 2.92 -824.84 -2.41 -29.66 16 10 C 0.55 30.32 7.21 86.36 0.62 30.94 16 11 O -0.65 -39.73 12.12 -4.31 -0.05 -39.78 16 12 C -0.55 -31.09 9.08 24.83 0.23 -30.86 16 13 H 0.09 4.77 6.43 -2.91 -0.02 4.75 16 14 C 0.08 4.36 5.52 85.30 0.47 4.83 16 15 N -0.85 -47.82 13.92 21.84 0.30 -47.52 16 16 Si 1.00 53.85 25.83 68.60 1.77 55.62 16 17 H -0.29 -16.49 7.11 99.48 0.71 -15.78 16 18 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 19 H -0.29 -16.95 6.82 99.48 0.68 -16.27 16 20 C 0.09 3.21 4.48 86.22 0.39 3.59 16 21 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 24 H 0.06 1.33 6.88 -2.39 -0.02 1.31 16 25 H 0.06 1.42 6.48 -2.39 -0.02 1.41 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 27 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.38 11.88 7.52 -74.05 -0.56 11.33 16 29 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.04 1.52 7.61 -2.39 -0.02 1.50 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 2.36 6.99 -2.39 -0.02 2.34 16 35 H 0.29 15.07 8.29 -92.71 -0.77 14.30 16 36 H 0.08 3.24 4.16 -2.39 -0.01 3.23 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -70.16 287.79 1.88 -68.29 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.48 Total: 10.67 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 3.60 Total: 3.40 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -2.11 Total: -77.17 kcal Atomic # 8 Polarization: -58.95 SS G_CDS: -1.86 Total: -60.81 kcal Atomic # 14 Polarization: 53.85 SS G_CDS: 1.77 Total: 55.62 kcal Total: -70.16 1.88 -68.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710194039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.001 kcal (2) G-P(sol) polarization free energy of solvation -70.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds