Wall clock time and date at job start Mon Mar 30 2020 03:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47086 * 2 1 4 4 C 1.53006 * 109.46998 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.49979 * 299.93383 * 4 3 2 6 6 C 1.53046 * 109.49453 * 179.83805 * 4 3 2 7 7 C 1.53039 * 109.53635 * 178.68559 * 6 4 3 8 8 C 1.53188 * 109.31460 * 61.36554 * 7 6 4 9 9 N 1.46961 * 108.88535 * 305.44352 * 8 7 6 10 10 C 1.34782 * 120.65246 * 233.52777 * 9 8 7 11 11 O 1.21690 * 119.99924 * 174.57202 * 10 9 8 12 12 C 1.46371 * 120.00003 * 354.57378 * 10 9 8 13 13 H 1.08002 * 119.99980 * 5.01598 * 12 10 9 14 14 C 1.40044 * 120.00021 * 185.01516 * 12 10 9 15 15 N 1.30678 * 119.99977 * 5.05802 * 14 12 10 16 16 Si 1.86805 * 120.00131 * 185.05282 * 14 12 10 17 17 H 1.48501 * 109.46743 * 85.00465 * 16 14 12 18 18 H 1.48497 * 109.47381 * 204.99947 * 16 14 12 19 19 H 1.48499 * 109.47224 * 325.00524 * 16 14 12 20 20 C 1.46921 * 118.71757 * 53.35782 * 9 8 7 21 21 H 1.09000 * 109.47035 * 299.99559 * 1 2 3 22 22 H 1.09001 * 109.47461 * 59.99498 * 1 2 3 23 23 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47035 * 240.00441 * 2 1 3 25 25 H 1.08996 * 109.47675 * 120.00049 * 2 1 3 26 26 H 1.09003 * 109.47316 * 60.00252 * 3 2 1 27 27 H 1.09001 * 109.47380 * 300.00552 * 3 2 1 28 28 H 0.96699 * 113.99819 * 60.06344 * 5 4 3 29 29 H 1.08997 * 109.46230 * 298.70601 * 6 4 3 30 30 H 1.08998 * 109.45757 * 58.66210 * 6 4 3 31 31 H 1.08997 * 109.49723 * 181.32243 * 7 6 4 32 32 H 1.09007 * 109.49641 * 301.41199 * 7 6 4 33 33 H 1.08995 * 109.58597 * 65.15204 * 8 7 6 34 34 H 1.08996 * 109.58712 * 185.57928 * 8 7 6 35 35 H 0.97001 * 119.99923 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.58912 * 186.78181 * 20 9 8 37 37 H 1.09005 * 109.58701 * 66.49736 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0475 0.7701 1.1664 6 6 4.0808 2.8852 -0.0047 7 6 5.6108 2.8865 0.0277 8 6 6.1447 2.1811 -1.2229 9 7 5.5439 0.8425 -1.3070 10 6 6.3200 -0.2526 -1.4292 11 8 5.8179 -1.3607 -1.3986 12 6 7.7668 -0.1091 -1.5987 13 1 8.2224 0.8686 -1.5449 14 6 8.5601 -1.2396 -1.8307 15 7 7.9997 -2.4087 -1.9944 16 14 10.4195 -1.0763 -1.9064 17 1 10.9784 -1.1418 -0.5322 18 1 10.9808 -2.1828 -2.7223 19 1 10.7773 0.2256 -2.5248 20 6 4.0808 0.7207 -1.2516 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9564 -0.8899 28 1 3.7632 -0.1517 1.2332 29 1 3.7363 3.3899 -0.9073 30 1 3.6985 3.4082 0.8718 31 1 5.9734 3.9142 0.0485 32 1 5.9563 2.3603 0.9177 33 1 5.8766 2.7560 -2.1092 34 1 7.2290 2.0916 -1.1571 35 1 8.5492 -3.1917 -2.1554 36 1 3.8033 -0.3323 -1.2047 37 1 3.6424 1.1750 -2.1402 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710194045.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:24 Heat of formation + Delta-G solvation = -103.989070 kcal Electronic energy + Delta-G solvation = -18459.899461 eV Core-core repulsion = 15622.450237 eV Total energy + Delta-G solvation = -2837.449225 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.39858 -36.82858 -34.69680 -33.74507 -32.54214 -31.31150 -30.03789 -26.96025 -25.69653 -24.21592 -22.49782 -20.56888 -19.98793 -19.02618 -16.54661 -16.04602 -15.71042 -15.29243 -14.60463 -14.32485 -14.06658 -13.91579 -13.34712 -12.91618 -12.61242 -12.53136 -12.30693 -12.02186 -11.62538 -11.60016 -11.24827 -11.13588 -11.05730 -10.90565 -10.60871 -10.52559 -10.42056 -10.20855 -9.98300 -9.67141 -9.41904 -8.81183 -7.54221 -7.10671 -6.18547 -4.60559 3.16130 3.22476 3.24766 4.10805 4.50319 4.60691 4.70352 4.84662 5.06754 5.08653 5.33703 5.39071 5.49731 5.54683 5.74150 5.79374 5.85202 5.86666 5.94208 6.04888 6.11204 6.18236 6.24135 6.28270 6.37235 6.42480 6.51122 6.57584 6.63245 6.92023 7.48633 7.66585 8.12324 8.20575 8.40046 9.05245 9.48641 10.60727 10.79483 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033481 B = 0.006941 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.087903 B = 4032.802168 C = 4601.505464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C -0.141 4.141 4 C 0.119 3.881 5 O -0.550 6.550 6 C -0.099 4.099 7 C -0.132 4.132 8 C 0.122 3.878 9 N -0.634 5.634 10 C 0.564 3.436 11 O -0.582 6.582 12 C -0.544 4.544 13 H 0.072 0.928 14 C 0.089 3.911 15 N -0.770 5.770 16 Si 0.906 3.094 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.265 1.265 20 C 0.097 3.903 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.372 0.628 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.091 0.909 35 H 0.268 0.732 36 H 0.087 0.913 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 8.763 2.865 12.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.179 4.179 4 C 0.077 3.923 5 O -0.356 6.356 6 C -0.136 4.136 7 C -0.171 4.171 8 C -0.003 4.003 9 N -0.371 5.371 10 C 0.370 3.630 11 O -0.465 6.465 12 C -0.581 4.581 13 H 0.090 0.910 14 C -0.131 4.131 15 N -0.399 5.399 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.028 4.028 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.220 0.780 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.835 8.511 2.932 12.613 hybrid contribution 0.574 -0.322 -0.162 0.678 sum -8.260 8.189 2.770 11.957 Atomic orbital electron populations 1.21736 0.95946 1.01445 1.01409 1.21614 0.95819 0.96940 1.02710 1.22246 0.96057 0.97307 1.02280 1.21594 0.90926 0.93234 0.86576 1.86480 1.77554 1.28538 1.43030 1.21430 0.96961 0.93927 1.01313 1.21883 0.94828 0.99747 1.00604 1.21425 0.99691 0.84265 0.94881 1.48024 1.03551 1.06559 1.78969 1.18190 0.87212 0.81743 0.75882 1.90564 1.75184 1.24809 1.55978 1.20973 0.90554 0.94176 1.52386 0.90963 1.25714 0.99998 0.94727 0.92633 1.70004 1.36308 0.99216 1.34324 0.86423 0.83188 0.78580 0.78783 1.19619 1.20548 1.18956 1.21819 0.84339 1.01537 0.95068 0.93053 0.92901 0.92842 0.91121 0.91874 0.91598 0.91382 0.78006 0.91390 0.92187 0.92249 0.90824 0.94329 0.89040 0.92135 0.89474 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.13 -1.68 5.28 -26.73 -0.14 -1.82 16 3 C -0.14 -1.82 4.49 -26.73 -0.12 -1.94 16 4 C 0.12 1.93 0.75 -90.50 -0.07 1.86 16 5 O -0.55 -10.06 12.14 -35.23 -0.43 -10.49 16 6 C -0.10 -1.48 4.92 -26.69 -0.13 -1.61 16 7 C -0.13 -2.18 5.94 -26.61 -0.16 -2.34 16 8 C 0.12 2.36 6.31 -3.69 -0.02 2.34 16 9 N -0.63 -14.72 2.92 -174.41 -0.51 -15.23 16 10 C 0.56 16.25 7.61 -12.99 -0.10 16.15 16 11 O -0.58 -18.82 14.49 5.20 0.08 -18.74 16 12 C -0.54 -15.48 8.85 -35.63 -0.32 -15.80 16 13 H 0.07 1.88 5.70 -52.49 -0.30 1.58 16 14 C 0.09 2.50 5.49 -17.37 -0.10 2.40 16 15 N -0.77 -23.20 11.87 55.55 0.66 -22.54 16 16 Si 0.91 20.29 29.56 -169.99 -5.03 15.26 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 C 0.10 1.91 4.83 -3.72 -0.02 1.90 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.99 6.56 -51.93 -0.34 0.65 16 25 H 0.06 0.80 6.78 -51.93 -0.35 0.45 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.37 6.29 7.34 45.56 0.33 6.63 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.39 7.61 -51.93 -0.40 0.99 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.87 5.38 -51.93 -0.28 1.59 16 35 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 36 H 0.09 1.90 5.61 -51.93 -0.29 1.61 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 291.40 15.07 4.39 4.39 Total: -1.00 -33.90 291.40 -6.62 -40.52 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.99 Total: 6.87 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -0.80 Total: -0.04 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.15 Total: -37.77 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.35 Total: -29.24 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.90 -6.62 -40.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710194045.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.465 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds