Wall clock time and date at job start Mon Mar 30 2020 03:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47086 * 2 1 4 4 C 1.53006 * 109.46998 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.49979 * 299.93383 * 4 3 2 6 6 C 1.53046 * 109.49453 * 179.83805 * 4 3 2 7 7 C 1.53039 * 109.53635 * 178.68559 * 6 4 3 8 8 C 1.53188 * 109.31460 * 61.36554 * 7 6 4 9 9 N 1.46961 * 108.88535 * 305.44352 * 8 7 6 10 10 C 1.34782 * 120.65246 * 233.52777 * 9 8 7 11 11 O 1.21690 * 119.99924 * 174.57202 * 10 9 8 12 12 C 1.46371 * 120.00003 * 354.57378 * 10 9 8 13 13 H 1.08002 * 119.99980 * 5.01598 * 12 10 9 14 14 C 1.40044 * 120.00021 * 185.01516 * 12 10 9 15 15 N 1.30678 * 119.99977 * 5.05802 * 14 12 10 16 16 Si 1.86805 * 120.00131 * 185.05282 * 14 12 10 17 17 H 1.48501 * 109.46743 * 85.00465 * 16 14 12 18 18 H 1.48497 * 109.47381 * 204.99947 * 16 14 12 19 19 H 1.48499 * 109.47224 * 325.00524 * 16 14 12 20 20 C 1.46921 * 118.71757 * 53.35782 * 9 8 7 21 21 H 1.09000 * 109.47035 * 299.99559 * 1 2 3 22 22 H 1.09001 * 109.47461 * 59.99498 * 1 2 3 23 23 H 1.09001 * 109.46725 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47035 * 240.00441 * 2 1 3 25 25 H 1.08996 * 109.47675 * 120.00049 * 2 1 3 26 26 H 1.09003 * 109.47316 * 60.00252 * 3 2 1 27 27 H 1.09001 * 109.47380 * 300.00552 * 3 2 1 28 28 H 0.96699 * 113.99819 * 60.06344 * 5 4 3 29 29 H 1.08997 * 109.46230 * 298.70601 * 6 4 3 30 30 H 1.08998 * 109.45757 * 58.66210 * 6 4 3 31 31 H 1.08997 * 109.49723 * 181.32243 * 7 6 4 32 32 H 1.09007 * 109.49641 * 301.41199 * 7 6 4 33 33 H 1.08995 * 109.58597 * 65.15204 * 8 7 6 34 34 H 1.08996 * 109.58712 * 185.57928 * 8 7 6 35 35 H 0.97001 * 119.99923 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.58912 * 186.78181 * 20 9 8 37 37 H 1.09005 * 109.58701 * 66.49736 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0475 0.7701 1.1664 6 6 4.0808 2.8852 -0.0047 7 6 5.6108 2.8865 0.0277 8 6 6.1447 2.1811 -1.2229 9 7 5.5439 0.8425 -1.3070 10 6 6.3200 -0.2526 -1.4292 11 8 5.8179 -1.3607 -1.3986 12 6 7.7668 -0.1091 -1.5987 13 1 8.2224 0.8686 -1.5449 14 6 8.5601 -1.2396 -1.8307 15 7 7.9997 -2.4087 -1.9944 16 14 10.4195 -1.0763 -1.9064 17 1 10.9784 -1.1418 -0.5322 18 1 10.9808 -2.1828 -2.7223 19 1 10.7773 0.2256 -2.5248 20 6 4.0808 0.7207 -1.2516 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.6767 1.9564 0.8900 27 1 1.6766 1.9564 -0.8899 28 1 3.7632 -0.1517 1.2332 29 1 3.7363 3.3899 -0.9073 30 1 3.6985 3.4082 0.8718 31 1 5.9734 3.9142 0.0485 32 1 5.9563 2.3603 0.9177 33 1 5.8766 2.7560 -2.1092 34 1 7.2290 2.0916 -1.1571 35 1 8.5492 -3.1917 -2.1554 36 1 3.8033 -0.3323 -1.2047 37 1 3.6424 1.1750 -2.1402 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710194045.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:23 Heat of formation + Delta-G solvation = -128.874469 kcal Electronic energy + Delta-G solvation = -18460.978573 eV Core-core repulsion = 15622.450237 eV Total energy + Delta-G solvation = -2838.528337 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.89808 -38.69743 -36.33046 -34.92184 -34.67561 -32.94251 -31.41097 -28.80335 -27.04750 -25.92936 -23.78396 -21.91121 -21.53578 -20.61655 -18.41894 -17.78451 -17.51757 -16.48860 -16.34021 -15.77589 -15.49781 -15.45650 -14.87346 -14.38909 -14.23487 -13.83132 -13.70501 -13.37001 -13.24681 -12.98930 -12.84566 -12.76166 -12.58368 -12.26064 -12.12564 -12.02212 -11.78434 -11.64101 -11.56436 -11.06880 -10.92434 -10.76945 -9.74752 -8.96542 -8.29958 -6.81952 1.38542 1.41059 1.54709 2.23819 2.46954 2.86716 3.36390 3.62479 3.67527 3.89349 3.97734 4.15687 4.22966 4.28347 4.33881 4.60594 4.65112 4.76087 4.80750 4.81595 4.92274 4.94695 5.00713 5.01709 5.16056 5.22113 5.25649 5.34176 5.40676 5.42502 5.54151 5.81071 6.15629 6.43653 6.77737 6.88754 7.45572 8.48827 8.68290 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.033481 B = 0.006941 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.087903 B = 4032.802168 C = 4601.505464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C -0.129 4.129 4 C 0.119 3.881 5 O -0.568 6.568 6 C -0.098 4.098 7 C -0.124 4.124 8 C 0.114 3.886 9 N -0.638 5.638 10 C 0.544 3.456 11 O -0.634 6.634 12 C -0.573 4.573 13 H 0.091 0.909 14 C 0.030 3.970 15 N -0.824 5.824 16 Si 0.994 3.006 17 H -0.263 1.263 18 H -0.273 1.273 19 H -0.247 1.247 20 C 0.094 3.906 21 H 0.063 0.937 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.373 0.627 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.273 0.727 36 H 0.055 0.945 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.880 11.485 3.024 14.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.167 4.167 4 C 0.078 3.922 5 O -0.375 6.375 6 C -0.136 4.136 7 C -0.163 4.163 8 C -0.009 4.009 9 N -0.373 5.373 10 C 0.350 3.650 11 O -0.522 6.522 12 C -0.609 4.609 13 H 0.109 0.891 14 C -0.185 4.185 15 N -0.454 5.454 16 Si 0.813 3.187 17 H -0.188 1.188 18 H -0.197 1.197 19 H -0.170 1.170 20 C -0.030 4.030 21 H 0.082 0.918 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.221 0.779 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.878 11.303 3.096 14.703 hybrid contribution 0.509 -1.142 -0.227 1.271 sum -8.369 10.161 2.869 13.473 Atomic orbital electron populations 1.21695 0.93885 1.01967 1.02466 1.21603 0.97600 0.96794 1.01274 1.22156 0.93126 0.97523 1.03891 1.21743 0.93186 0.93415 0.83877 1.86460 1.78290 1.28796 1.43935 1.21522 0.95545 0.92908 1.03579 1.21803 0.96205 1.00862 0.97386 1.21654 0.98867 0.82735 0.97602 1.47909 1.04899 1.06834 1.77688 1.18584 0.88284 0.82369 0.75771 1.90511 1.76236 1.27181 1.58270 1.21509 0.91130 0.95510 1.52726 0.89124 1.26971 1.06367 0.93862 0.91299 1.70177 1.39059 1.00514 1.35624 0.85089 0.74923 0.79447 0.79201 1.18821 1.19731 1.16988 1.22022 0.82457 1.00561 0.97972 0.91774 0.91974 0.92714 0.93431 0.92659 0.89934 0.89568 0.77948 0.88828 0.90073 0.88534 0.93780 0.91865 0.90647 0.91674 0.92656 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.91 71.98 0.71 -2.02 16 2 C -0.14 -3.34 5.28 30.59 0.16 -3.18 16 3 C -0.13 -3.03 4.49 30.60 0.14 -2.89 16 4 C 0.12 3.72 0.75 -10.71 -0.01 3.71 16 5 O -0.57 -20.91 12.14 -148.98 -1.81 -22.72 16 6 C -0.10 -2.60 4.92 30.62 0.15 -2.45 16 7 C -0.12 -3.81 5.94 30.67 0.18 -3.62 16 8 C 0.11 4.30 6.31 86.35 0.54 4.85 16 9 N -0.64 -30.08 2.92 -823.92 -2.41 -32.49 16 10 C 0.54 32.64 7.61 86.36 0.66 33.29 16 11 O -0.63 -43.41 14.49 -4.32 -0.06 -43.47 16 12 C -0.57 -33.30 8.85 24.83 0.22 -33.08 16 13 H 0.09 4.75 5.70 -2.91 -0.02 4.73 16 14 C 0.03 1.70 5.49 85.30 0.47 2.17 16 15 N -0.82 -51.52 11.87 21.84 0.26 -51.26 16 16 Si 0.99 41.84 29.56 68.60 2.03 43.87 16 17 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 20 C 0.09 3.73 4.83 86.36 0.42 4.15 16 21 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 1.38 6.56 -2.39 -0.02 1.37 16 25 H 0.05 1.43 6.78 -2.39 -0.02 1.41 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.37 13.24 7.34 -74.06 -0.54 12.69 16 29 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.04 1.61 7.61 -2.38 -0.02 1.59 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 3.04 5.38 -2.39 -0.01 3.03 16 35 H 0.27 15.49 8.29 -92.71 -0.77 14.73 16 36 H 0.05 2.55 5.61 -2.38 -0.01 2.54 16 37 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -77.45 291.40 2.17 -75.28 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.52 Total: 29.89 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 3.64 Total: 0.91 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -2.15 Total: -83.75 kcal Atomic # 8 Polarization: -64.32 SS G_CDS: -1.87 Total: -66.19 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -77.45 2.17 -75.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710194045.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.593 kcal (2) G-P(sol) polarization free energy of solvation -77.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds