Wall clock time and date at job start Mon Mar 30 2020 03:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 C 1.53000 * 109.47137 * 120.00011 * 2 1 3 5 5 O 1.42901 * 109.49555 * 300.00065 * 4 2 1 6 6 C 1.53039 * 109.49597 * 179.97438 * 4 2 1 7 7 C 1.53040 * 109.53857 * 178.64984 * 6 4 2 8 8 C 1.53194 * 109.31129 * 61.36418 * 7 6 4 9 9 N 1.46930 * 108.77584 * 305.36643 * 8 7 6 10 10 C 1.34769 * 120.63136 * 233.62840 * 9 8 7 11 11 O 1.21687 * 120.00047 * 174.75895 * 10 9 8 12 12 C 1.46381 * 119.99972 * 354.76054 * 10 9 8 13 13 H 1.07994 * 119.99991 * 5.00903 * 12 10 9 14 14 C 1.40043 * 119.99983 * 185.00477 * 12 10 9 15 15 N 1.30677 * 119.99992 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00068 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47131 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47113 * 120.00358 * 16 14 12 19 19 H 1.48498 * 109.47237 * 239.99871 * 16 14 12 20 20 C 1.46997 * 118.75201 * 53.60758 * 9 8 7 21 21 H 1.09007 * 109.47001 * 60.00218 * 1 2 3 22 22 H 1.08996 * 109.46883 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47181 * 299.99993 * 1 2 3 24 24 H 1.09007 * 109.47178 * 240.00016 * 2 1 3 25 25 H 1.09005 * 109.47077 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47018 * 299.99546 * 3 2 1 27 27 H 1.08997 * 109.47189 * 60.00011 * 3 2 1 28 28 H 0.96700 * 113.99631 * 180.02562 * 5 4 2 29 29 H 1.09005 * 109.46040 * 298.67110 * 6 4 2 30 30 H 1.09002 * 109.46069 * 58.63278 * 6 4 2 31 31 H 1.09000 * 109.50050 * 181.31538 * 7 6 4 32 32 H 1.09001 * 109.49587 * 301.41542 * 7 6 4 33 33 H 1.08999 * 109.58452 * 65.15183 * 8 7 6 34 34 H 1.09000 * 109.58899 * 185.57919 * 8 7 6 35 35 H 0.97004 * 119.99621 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.62404 * 186.61933 * 20 9 8 37 37 H 1.08998 * 109.57927 * 66.17135 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.5640 -0.0480 2.4164 6 6 3.5704 -0.7221 1.2495 7 6 4.0816 -1.4138 2.5154 8 6 3.5972 -2.8670 2.5294 9 7 2.1353 -2.8797 2.3834 10 6 1.3619 -3.5326 3.2732 11 8 0.1498 -3.4570 3.1968 12 6 1.9800 -4.3328 4.3317 13 1 3.0535 -4.3354 4.4497 14 6 1.1792 -5.0949 5.1915 15 7 -0.1197 -5.0921 5.0485 16 14 1.9679 -6.1154 6.5428 17 1 3.4425 -5.9472 6.4935 18 1 1.4624 -5.6630 7.8638 19 1 1.6256 -7.5469 6.3458 20 6 1.5319 -2.1664 1.2485 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.8498 -0.4517 3.2473 29 1 3.9334 -1.2569 0.3717 30 1 3.9342 0.3051 1.2249 31 1 5.1714 -1.3934 2.5263 32 1 3.6987 -0.8941 3.3937 33 1 4.0519 -3.4117 1.7020 34 1 3.8741 -3.3354 3.4739 35 1 -0.6743 -5.6197 5.6443 36 1 0.4465 -2.1721 1.3479 37 1 1.8182 -2.6540 0.3167 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710203034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:27 Heat of formation + Delta-G solvation = -99.540056 kcal Electronic energy + Delta-G solvation = -18709.454147 eV Core-core repulsion = 15872.197846 eV Total energy + Delta-G solvation = -2837.256301 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.67196 -36.89297 -34.56092 -33.72320 -32.60091 -31.24546 -29.23347 -27.18439 -26.28754 -24.04379 -23.01462 -20.79234 -19.47696 -18.92699 -16.94397 -16.09998 -15.76095 -14.79840 -14.44864 -14.24151 -14.02013 -13.78127 -13.41171 -13.15625 -12.79030 -12.36834 -12.24298 -11.90336 -11.68135 -11.43666 -11.26131 -11.11564 -11.01709 -10.93011 -10.61678 -10.56168 -10.33855 -10.24135 -10.16901 -9.71046 -9.32704 -8.88076 -7.59827 -7.22996 -6.22470 -4.67839 3.10584 3.18990 3.22728 4.05345 4.47456 4.53055 4.67858 4.92934 5.04582 5.27461 5.28945 5.43596 5.50881 5.68907 5.73499 5.83827 5.90795 5.94440 6.06728 6.10279 6.14703 6.17895 6.21256 6.35238 6.40021 6.47044 6.51928 6.64632 6.71139 6.76603 7.42895 7.58492 8.09875 8.18690 8.31348 8.99466 9.39941 10.54814 10.73361 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039080 B = 0.007070 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.299882 B = 3959.673084 C = 4394.610239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.142 4.142 4 C 0.127 3.873 5 O -0.554 6.554 6 C -0.143 4.143 7 C -0.139 4.139 8 C 0.118 3.882 9 N -0.644 5.644 10 C 0.558 3.442 11 O -0.573 6.573 12 C -0.545 4.545 13 H 0.073 0.927 14 C 0.087 3.913 15 N -0.767 5.767 16 Si 0.906 3.094 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.094 3.906 21 H 0.046 0.954 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.378 0.622 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.042 0.958 34 H 0.094 0.906 35 H 0.268 0.732 36 H 0.094 0.906 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.715 7.577 -6.871 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 C -0.199 4.199 4 C 0.085 3.915 5 O -0.362 6.362 6 C -0.180 4.180 7 C -0.178 4.178 8 C -0.007 4.007 9 N -0.383 5.383 10 C 0.364 3.636 11 O -0.455 6.455 12 C -0.582 4.582 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.395 5.395 16 Si 0.731 3.269 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.030 4.030 21 H 0.065 0.935 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.227 0.773 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.563 7.914 -7.281 12.598 hybrid contribution 0.844 -0.946 0.990 1.608 sum 7.407 6.968 -6.291 11.958 Atomic orbital electron populations 1.21807 0.94648 1.02266 1.01533 1.21033 0.96680 0.96256 0.95712 1.21801 1.00497 0.95989 1.01636 1.21494 0.91750 0.91987 0.86284 1.86367 1.77490 1.56396 1.15908 1.22215 0.96481 1.00703 0.98634 1.21996 1.00124 0.97697 0.97957 1.21476 0.82549 0.94382 1.02272 1.48272 1.05221 1.56634 1.28134 1.18282 0.85926 0.78641 0.80781 1.90605 1.14210 1.65569 1.75148 1.21015 0.93927 1.28510 1.14700 0.90881 1.25732 0.94445 0.95738 0.97327 1.70028 1.04522 1.32037 1.32962 0.86341 0.80132 0.79668 0.80786 1.18762 1.20135 1.20174 1.21903 1.00865 0.90346 0.89884 0.93463 0.92301 0.91712 0.90782 0.92923 0.93384 0.91862 0.77306 0.91683 0.91596 0.91603 0.91749 0.93991 0.88786 0.92116 0.88761 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.70 37.16 0.32 -1.81 16 2 C -0.08 -1.09 2.34 -90.62 -0.21 -1.31 16 3 C -0.14 -1.76 8.70 37.16 0.32 -1.44 16 4 C 0.13 2.07 0.47 -90.50 -0.04 2.03 16 5 O -0.55 -10.21 11.59 -35.23 -0.41 -10.62 16 6 C -0.14 -2.01 4.60 -26.69 -0.12 -2.13 16 7 C -0.14 -2.05 5.78 -26.61 -0.15 -2.20 16 8 C 0.12 2.12 6.32 -3.71 -0.02 2.09 16 9 N -0.64 -14.29 2.55 -174.37 -0.44 -14.73 16 10 C 0.56 15.59 7.62 -12.99 -0.10 15.49 16 11 O -0.57 -18.42 14.46 5.20 0.08 -18.34 16 12 C -0.54 -14.97 8.86 -35.63 -0.32 -15.28 16 13 H 0.07 1.82 5.69 -52.49 -0.30 1.53 16 14 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 15 N -0.77 -22.80 11.84 55.55 0.66 -22.14 16 16 Si 0.91 19.81 29.56 -169.99 -5.02 14.79 16 17 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 C 0.09 1.87 4.87 -3.68 -0.02 1.85 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.93 6.57 -51.93 -0.34 0.59 16 23 H 0.06 1.05 7.68 -51.93 -0.40 0.65 16 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.60 6.40 -51.93 -0.33 0.27 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.87 7.68 -51.93 -0.40 0.47 16 28 H 0.38 7.18 6.86 45.56 0.31 7.49 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.86 6.36 -51.93 -0.33 0.53 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.99 6.69 -51.93 -0.35 0.64 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.78 5.37 -51.93 -0.28 1.50 16 35 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 36 H 0.09 2.17 5.61 -51.93 -0.29 1.88 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 285.27 15.07 4.30 4.30 Total: -1.00 -32.57 285.27 -6.08 -38.65 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.80 Total: 8.50 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -0.44 Total: -0.40 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.21 Total: -36.87 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.33 Total: -28.96 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.57 -6.08 -38.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710203034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.890 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds