Wall clock time and date at job start Mon Mar 30 2020 03:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 C 1.53000 * 109.47137 * 120.00011 * 2 1 3 5 5 O 1.42901 * 109.49555 * 300.00065 * 4 2 1 6 6 C 1.53039 * 109.49597 * 179.97438 * 4 2 1 7 7 C 1.53040 * 109.53857 * 178.64984 * 6 4 2 8 8 C 1.53194 * 109.31129 * 61.36418 * 7 6 4 9 9 N 1.46930 * 108.77584 * 305.36643 * 8 7 6 10 10 C 1.34769 * 120.63136 * 233.62840 * 9 8 7 11 11 O 1.21687 * 120.00047 * 174.75895 * 10 9 8 12 12 C 1.46381 * 119.99972 * 354.76054 * 10 9 8 13 13 H 1.07994 * 119.99991 * 5.00903 * 12 10 9 14 14 C 1.40043 * 119.99983 * 185.00477 * 12 10 9 15 15 N 1.30677 * 119.99992 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 120.00068 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47131 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47113 * 120.00358 * 16 14 12 19 19 H 1.48498 * 109.47237 * 239.99871 * 16 14 12 20 20 C 1.46997 * 118.75201 * 53.60758 * 9 8 7 21 21 H 1.09007 * 109.47001 * 60.00218 * 1 2 3 22 22 H 1.08996 * 109.46883 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47181 * 299.99993 * 1 2 3 24 24 H 1.09007 * 109.47178 * 240.00016 * 2 1 3 25 25 H 1.09005 * 109.47077 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47018 * 299.99546 * 3 2 1 27 27 H 1.08997 * 109.47189 * 60.00011 * 3 2 1 28 28 H 0.96700 * 113.99631 * 180.02562 * 5 4 2 29 29 H 1.09005 * 109.46040 * 298.67110 * 6 4 2 30 30 H 1.09002 * 109.46069 * 58.63278 * 6 4 2 31 31 H 1.09000 * 109.50050 * 181.31538 * 7 6 4 32 32 H 1.09001 * 109.49587 * 301.41542 * 7 6 4 33 33 H 1.08999 * 109.58452 * 65.15183 * 8 7 6 34 34 H 1.09000 * 109.58899 * 185.57919 * 8 7 6 35 35 H 0.97004 * 119.99621 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.62404 * 186.61933 * 20 9 8 37 37 H 1.08998 * 109.57927 * 66.17135 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.5640 -0.0480 2.4164 6 6 3.5704 -0.7221 1.2495 7 6 4.0816 -1.4138 2.5154 8 6 3.5972 -2.8670 2.5294 9 7 2.1353 -2.8797 2.3834 10 6 1.3619 -3.5326 3.2732 11 8 0.1498 -3.4570 3.1968 12 6 1.9800 -4.3328 4.3317 13 1 3.0535 -4.3354 4.4497 14 6 1.1792 -5.0949 5.1915 15 7 -0.1197 -5.0921 5.0485 16 14 1.9679 -6.1154 6.5428 17 1 3.4425 -5.9472 6.4935 18 1 1.4624 -5.6630 7.8638 19 1 1.6256 -7.5469 6.3458 20 6 1.5319 -2.1664 1.2485 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 1.8498 -0.4517 3.2473 29 1 3.9334 -1.2569 0.3717 30 1 3.9342 0.3051 1.2249 31 1 5.1714 -1.3934 2.5263 32 1 3.6987 -0.8941 3.3937 33 1 4.0519 -3.4117 1.7020 34 1 3.8741 -3.3354 3.4739 35 1 -0.6743 -5.6197 5.6443 36 1 0.4465 -2.1721 1.3479 37 1 1.8182 -2.6540 0.3167 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710203034.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:27 Heat of formation + Delta-G solvation = -123.242953 kcal Electronic energy + Delta-G solvation = -18710.481982 eV Core-core repulsion = 15872.197846 eV Total energy + Delta-G solvation = -2838.284136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.13752 -38.76819 -36.16047 -35.06420 -34.68502 -32.80152 -30.73220 -28.51757 -28.07163 -25.59272 -24.41712 -22.26983 -20.94751 -20.47871 -18.54843 -17.91501 -17.62074 -16.44408 -15.90268 -15.78602 -15.43873 -15.02452 -14.98231 -14.57422 -14.40464 -13.86955 -13.64295 -13.51374 -13.07291 -12.94822 -12.80387 -12.76582 -12.60655 -12.31346 -12.01328 -11.96081 -11.81077 -11.69741 -11.57816 -11.14658 -10.94641 -10.69191 -9.76305 -9.03690 -8.29225 -6.83936 1.39432 1.39946 1.57459 2.22954 2.46188 2.81279 3.33493 3.59027 3.70627 3.85092 3.98977 4.16278 4.22887 4.30628 4.42215 4.60915 4.68129 4.71725 4.82982 4.91754 4.94369 4.99580 5.01533 5.07268 5.08758 5.18779 5.24608 5.39572 5.40328 5.49084 5.57880 5.78180 6.14824 6.38844 6.71823 6.88222 7.43031 8.47779 8.67815 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.039080 B = 0.007070 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.299882 B = 3959.673084 C = 4394.610239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C -0.135 4.135 4 C 0.127 3.873 5 O -0.566 6.566 6 C -0.135 4.135 7 C -0.131 4.131 8 C 0.112 3.888 9 N -0.644 5.644 10 C 0.541 3.459 11 O -0.632 6.632 12 C -0.567 4.567 13 H 0.096 0.904 14 C 0.027 3.973 15 N -0.825 5.825 16 Si 0.995 3.005 17 H -0.243 1.243 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.093 3.907 21 H 0.073 0.927 22 H 0.036 0.964 23 H 0.039 0.961 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.371 0.629 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.273 0.727 36 H 0.051 0.949 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.947 8.124 -7.510 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.097 4.097 3 C -0.193 4.193 4 C 0.085 3.915 5 O -0.373 6.373 6 C -0.173 4.173 7 C -0.169 4.169 8 C -0.011 4.011 9 N -0.381 5.381 10 C 0.347 3.653 11 O -0.519 6.519 12 C -0.603 4.603 13 H 0.114 0.886 14 C -0.187 4.187 15 N -0.455 5.455 16 Si 0.815 3.185 17 H -0.165 1.165 18 H -0.196 1.196 19 H -0.196 1.196 20 C -0.031 4.031 21 H 0.092 0.908 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.115 0.885 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.063 0.937 28 H 0.219 0.781 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.858 8.495 -7.964 15.257 hybrid contribution -0.183 -1.090 1.094 1.555 sum 9.676 7.405 -6.870 13.988 Atomic orbital electron populations 1.21783 0.95841 1.00873 1.01626 1.21131 0.95741 0.97667 0.95150 1.21749 1.01488 0.94266 1.01750 1.21670 0.93832 0.89472 0.86489 1.86383 1.78138 1.56515 1.16282 1.22187 0.93855 1.02252 0.98996 1.21942 1.02188 0.94817 0.97994 1.21716 0.79726 0.97253 1.02427 1.48094 1.06931 1.55565 1.27476 1.18687 0.85645 0.79074 0.81933 1.90556 1.16769 1.67667 1.76882 1.21546 0.95233 1.28581 1.14984 0.88621 1.27010 0.94779 0.96816 1.00121 1.70216 1.06856 1.33629 1.34754 0.85003 0.79866 0.77240 0.76399 1.16545 1.19606 1.19556 1.22023 0.98466 0.93084 0.89515 0.90763 0.94483 0.94157 0.88494 0.91204 0.91352 0.93723 0.78100 0.89689 0.89397 0.87929 0.92879 0.92018 0.89970 0.91739 0.93087 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 8.70 71.98 0.63 -3.62 16 2 C -0.08 -2.04 2.34 -10.79 -0.03 -2.06 16 3 C -0.14 -2.94 8.70 71.98 0.63 -2.31 16 4 C 0.13 4.00 0.47 -10.72 -0.01 4.00 16 5 O -0.57 -21.17 11.59 -148.98 -1.73 -22.89 16 6 C -0.14 -3.32 4.60 30.62 0.14 -3.18 16 7 C -0.13 -3.46 5.78 30.67 0.18 -3.28 16 8 C 0.11 3.83 6.32 86.36 0.55 4.37 16 9 N -0.64 -28.99 2.55 -823.82 -2.10 -31.09 16 10 C 0.54 31.48 7.62 86.36 0.66 32.14 16 11 O -0.63 -43.21 14.46 -4.31 -0.06 -43.27 16 12 C -0.57 -31.70 8.86 24.83 0.22 -31.48 16 13 H 0.10 4.73 5.69 -2.91 -0.02 4.71 16 14 C 0.03 1.53 5.50 85.30 0.47 2.00 16 15 N -0.82 -51.08 11.84 21.83 0.26 -50.82 16 16 Si 1.00 40.74 29.56 68.60 2.03 42.77 16 17 H -0.24 -9.00 7.11 99.48 0.71 -8.29 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 20 C 0.09 3.75 4.87 86.35 0.42 4.17 16 21 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 22 H 0.04 1.22 6.57 -2.39 -0.02 1.21 16 23 H 0.04 1.35 7.68 -2.39 -0.02 1.34 16 24 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 25 H 0.07 1.28 6.40 -2.38 -0.02 1.27 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 1.14 7.68 -2.39 -0.02 1.12 16 28 H 0.37 14.58 6.86 -74.06 -0.51 14.07 16 29 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.09 1.86 6.36 -2.39 -0.02 1.84 16 31 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.05 1.54 6.69 -2.39 -0.02 1.52 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 3.00 5.37 -2.39 -0.01 2.99 16 35 H 0.27 15.32 8.29 -92.71 -0.77 14.55 16 36 H 0.05 2.50 5.61 -2.39 -0.01 2.49 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -75.77 285.27 2.82 -72.96 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.57 Total: 31.60 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 3.85 Total: 0.75 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -1.84 Total: -81.92 kcal Atomic # 8 Polarization: -64.38 SS G_CDS: -1.79 Total: -66.16 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -75.77 2.82 -72.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710203034.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.286 kcal (2) G-P(sol) polarization free energy of solvation -75.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds