Wall clock time and date at job start Mon Mar 30 2020 03:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00226 * 2 1 4 4 H 1.48497 * 109.46878 * 240.00051 * 3 2 1 5 5 H 1.48506 * 109.46838 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46871 * 119.99940 * 3 2 1 7 7 C 1.37880 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99666 * 173.00576 * 7 2 1 9 9 C 1.50700 * 120.00062 * 353.00715 * 7 2 1 10 10 C 1.52998 * 115.55034 * 84.90597 * 9 7 2 11 11 N 1.46896 * 109.47505 * 65.16290 * 10 9 7 12 12 C 1.46903 * 110.99907 * 174.67991 * 11 10 9 13 13 H 1.08998 * 109.52082 * 324.87806 * 12 11 10 14 14 C 1.53093 * 109.51747 * 85.00324 * 12 11 10 15 15 O 1.42911 * 109.41379 * 177.51243 * 14 12 11 16 16 C 1.42908 * 114.09712 * 298.84518 * 15 14 12 17 17 C 1.53094 * 109.41497 * 61.15298 * 16 15 14 18 18 C 1.53175 * 109.52056 * 204.68764 * 12 11 10 19 19 H 1.08998 * 109.54894 * 302.98200 * 18 12 11 20 20 O 1.42899 * 109.54452 * 63.25346 * 18 12 11 21 21 C 1.53005 * 117.49397 * 230.57109 * 9 7 2 22 22 C 1.52998 * 117.49818 * 299.22886 * 9 7 2 23 23 H 0.96997 * 119.99658 * 5.04087 * 1 2 3 24 24 H 1.09009 * 109.46908 * 305.16364 * 10 9 7 25 25 H 1.09003 * 109.47104 * 185.17300 * 10 9 7 26 26 H 1.00895 * 111.00441 * 298.63953 * 11 10 9 27 27 H 1.08991 * 109.48409 * 297.49366 * 14 12 11 28 28 H 1.08998 * 109.47992 * 57.52117 * 14 12 11 29 29 H 1.08992 * 109.47959 * 181.14091 * 16 15 14 30 30 H 1.08999 * 109.47532 * 301.17478 * 16 15 14 31 31 H 1.09005 * 109.52076 * 62.30077 * 17 16 15 32 32 H 1.09002 * 109.52019 * 182.48228 * 17 16 15 33 33 H 0.96703 * 113.99804 * 180.02562 * 20 18 12 34 34 H 1.09001 * 117.49740 * 215.00129 * 21 9 7 35 35 H 1.08997 * 117.50415 * 0.02562 * 21 9 7 36 36 H 1.09003 * 117.49510 * 359.97438 * 22 9 7 37 37 H 1.09000 * 117.49818 * 145.00086 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0784 -1.1976 -0.1134 9 6 1.2593 -2.4943 0.1600 10 6 0.6823 -3.0863 -1.1274 11 7 1.7799 -3.4624 -2.0284 12 6 1.2691 -4.1501 -3.2218 13 1 0.4080 -4.7604 -2.9499 14 6 0.8521 -3.1146 -4.2695 15 8 0.4100 -3.7860 -5.4511 16 6 1.4096 -4.5993 -6.0688 17 6 1.8491 -5.6942 -5.0932 18 6 2.3672 -5.0434 -3.8070 19 1 3.2467 -4.4403 -4.0322 20 8 2.7111 -6.0591 -2.8624 21 6 1.7643 -3.4720 1.2230 22 6 0.4631 -2.6985 1.4504 23 1 -0.4849 0.8368 -0.0738 24 1 0.0488 -2.3458 -1.6158 25 1 0.0901 -3.9695 -0.8876 26 1 2.3307 -2.6564 -2.2834 27 1 0.0411 -2.5034 -3.8738 28 1 1.7033 -2.4778 -4.5101 29 1 1.0003 -5.0573 -6.9691 30 1 2.2682 -3.9818 -6.3330 31 1 0.9999 -6.3366 -4.8600 32 1 2.6428 -6.2884 -5.5462 33 1 3.4026 -6.6623 -3.1677 34 1 1.6854 -4.5371 1.0052 35 1 2.6352 -3.1748 1.8072 36 1 0.4787 -1.8926 2.1842 37 1 -0.4718 -3.2547 1.3823 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710929734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:59 Heat of formation + Delta-G solvation = -74.059918 kcal Electronic energy + Delta-G solvation = -18140.354747 eV Core-core repulsion = 15304.203348 eV Total energy + Delta-G solvation = -2836.151399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.58109 -36.82410 -36.34195 -34.21103 -31.89241 -31.57506 -29.04646 -25.60527 -24.48770 -24.23661 -22.24742 -20.89070 -20.28557 -18.94203 -17.26084 -16.16678 -16.01884 -15.84965 -15.06857 -14.61267 -14.51497 -14.03776 -13.68548 -13.45639 -12.94772 -12.74597 -12.46393 -11.97165 -11.52845 -11.32783 -11.24446 -10.94134 -10.90654 -10.84636 -10.44839 -10.34900 -10.06906 -9.77745 -9.64873 -9.34708 -8.71291 -8.39465 -8.01520 -7.42201 -6.00666 -4.06826 3.29446 3.35438 3.38228 3.86712 4.33296 4.40618 4.62653 4.82510 4.94854 5.10686 5.27248 5.27770 5.31793 5.48592 5.60605 5.65460 5.72750 5.78426 5.94906 6.10849 6.23083 6.31528 6.55896 6.63920 6.87194 6.90326 6.97608 7.19672 7.22983 7.56414 7.60992 7.87166 7.89869 8.00821 8.27933 8.53666 8.96555 9.58552 11.07129 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025206 B = 0.007033 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.580707 B = 3980.000232 C = 4539.112424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.070 3.930 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.494 4.494 8 H 0.059 0.941 9 C 0.051 3.949 10 C 0.107 3.893 11 N -0.659 5.659 12 C 0.063 3.937 13 H 0.084 0.916 14 C 0.034 3.966 15 O -0.383 6.383 16 C 0.063 3.937 17 C -0.190 4.190 18 C 0.118 3.882 19 H 0.053 0.947 20 O -0.543 6.543 21 C -0.199 4.199 22 C -0.163 4.163 23 H 0.260 0.740 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.345 0.655 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.365 0.635 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.336 -8.642 -10.291 13.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.133 4.133 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.532 4.532 8 H 0.077 0.923 9 C 0.050 3.950 10 C -0.022 4.022 11 N -0.290 5.290 12 C -0.049 4.049 13 H 0.102 0.898 14 C -0.044 4.044 15 O -0.301 6.301 16 C -0.014 4.014 17 C -0.228 4.228 18 C 0.058 3.942 19 H 0.071 0.929 20 O -0.347 6.347 21 C -0.236 4.236 22 C -0.201 4.201 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.164 0.836 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.210 0.790 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.642 -8.752 -9.601 13.257 hybrid contribution 0.702 1.387 -0.731 1.718 sum 3.343 -7.365 -10.332 13.121 Atomic orbital electron populations 1.69981 1.05834 1.26679 1.49156 1.25004 0.94769 0.98746 0.94745 0.86750 0.79674 0.83404 0.78674 1.20343 1.21413 1.20234 1.20444 0.93088 0.88889 1.50798 0.92280 1.18701 0.97387 0.93300 0.85614 1.21488 0.90852 0.95989 0.93866 1.60439 1.23727 1.31912 1.12969 1.22166 0.96536 0.95185 0.90987 0.89766 1.23554 1.01066 0.94792 0.85014 1.87931 1.37920 1.63014 1.41211 1.22501 0.92012 0.91652 0.95278 1.23022 1.02536 0.99729 0.97539 1.21785 0.96682 0.88885 0.86886 0.92944 1.86716 1.60056 1.44358 1.43526 1.22862 0.97437 0.96011 1.07278 1.22540 0.92573 1.01353 1.03662 0.93052 0.94641 0.94322 0.83599 0.87954 0.92863 0.88953 0.93229 0.90308 0.90875 0.78973 0.91538 0.90996 0.90382 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.62 12.95 55.43 0.72 -23.90 16 2 C 0.07 1.90 5.39 -17.82 -0.10 1.80 16 3 Si 0.89 20.87 29.55 -169.99 -5.02 15.85 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.49 -13.24 8.32 -34.44 -0.29 -13.53 16 8 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 9 C 0.05 1.26 1.56 -155.66 -0.24 1.02 16 10 C 0.11 2.42 5.37 -3.83 -0.02 2.40 16 11 N -0.66 -13.12 6.15 -106.58 -0.66 -13.78 16 12 C 0.06 1.06 2.34 -67.57 -0.16 0.90 16 13 H 0.08 1.54 7.72 -51.93 -0.40 1.13 16 14 C 0.03 0.54 6.10 37.21 0.23 0.77 16 15 O -0.38 -5.74 10.77 -35.23 -0.38 -6.12 16 16 C 0.06 0.71 6.84 37.21 0.25 0.96 16 17 C -0.19 -2.10 5.77 -26.59 -0.15 -2.26 16 18 C 0.12 1.65 3.20 -26.55 -0.08 1.56 16 19 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 20 O -0.54 -8.07 13.25 -35.23 -0.47 -8.53 16 21 C -0.20 -4.61 9.96 -26.69 -0.27 -4.87 16 22 C -0.16 -3.98 9.46 -26.69 -0.25 -4.23 16 23 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 24 H 0.04 0.87 7.63 -51.92 -0.40 0.47 16 25 H 0.04 0.86 7.88 -51.93 -0.41 0.46 16 26 H 0.34 7.04 8.02 -39.29 -0.32 6.73 16 27 H 0.10 1.74 7.63 -51.93 -0.40 1.35 16 28 H 0.05 0.80 8.09 -51.93 -0.42 0.38 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.37 3.57 9.09 45.56 0.41 3.98 16 34 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 36 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 37 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 303.78 15.07 4.58 4.58 Total: -1.00 -29.65 303.78 -7.58 -37.23 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.27 Total: 10.16 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -1.08 Total: -15.49 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.06 Total: -37.68 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.85 Total: -14.65 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.65 -7.58 -37.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710929734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.831 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds