Wall clock time and date at job start Mon Mar 30 2020 03:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00226 * 2 1 4 4 H 1.48497 * 109.46878 * 240.00051 * 3 2 1 5 5 H 1.48506 * 109.46838 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46871 * 119.99940 * 3 2 1 7 7 C 1.37880 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99666 * 173.00576 * 7 2 1 9 9 C 1.50700 * 120.00062 * 353.00715 * 7 2 1 10 10 C 1.52998 * 115.55034 * 84.90597 * 9 7 2 11 11 N 1.46896 * 109.47505 * 65.16290 * 10 9 7 12 12 C 1.46903 * 110.99907 * 174.67991 * 11 10 9 13 13 H 1.08998 * 109.52082 * 324.87806 * 12 11 10 14 14 C 1.53093 * 109.51747 * 85.00324 * 12 11 10 15 15 O 1.42911 * 109.41379 * 177.51243 * 14 12 11 16 16 C 1.42908 * 114.09712 * 298.84518 * 15 14 12 17 17 C 1.53094 * 109.41497 * 61.15298 * 16 15 14 18 18 C 1.53175 * 109.52056 * 204.68764 * 12 11 10 19 19 H 1.08998 * 109.54894 * 302.98200 * 18 12 11 20 20 O 1.42899 * 109.54452 * 63.25346 * 18 12 11 21 21 C 1.53005 * 117.49397 * 230.57109 * 9 7 2 22 22 C 1.52998 * 117.49818 * 299.22886 * 9 7 2 23 23 H 0.96997 * 119.99658 * 5.04087 * 1 2 3 24 24 H 1.09009 * 109.46908 * 305.16364 * 10 9 7 25 25 H 1.09003 * 109.47104 * 185.17300 * 10 9 7 26 26 H 1.00895 * 111.00441 * 298.63953 * 11 10 9 27 27 H 1.08991 * 109.48409 * 297.49366 * 14 12 11 28 28 H 1.08998 * 109.47992 * 57.52117 * 14 12 11 29 29 H 1.08992 * 109.47959 * 181.14091 * 16 15 14 30 30 H 1.08999 * 109.47532 * 301.17478 * 16 15 14 31 31 H 1.09005 * 109.52076 * 62.30077 * 17 16 15 32 32 H 1.09002 * 109.52019 * 182.48228 * 17 16 15 33 33 H 0.96703 * 113.99804 * 180.02562 * 20 18 12 34 34 H 1.09001 * 117.49740 * 215.00129 * 21 9 7 35 35 H 1.08997 * 117.50415 * 0.02562 * 21 9 7 36 36 H 1.09003 * 117.49510 * 359.97438 * 22 9 7 37 37 H 1.09000 * 117.49818 * 145.00086 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0784 -1.1976 -0.1134 9 6 1.2593 -2.4943 0.1600 10 6 0.6823 -3.0863 -1.1274 11 7 1.7799 -3.4624 -2.0284 12 6 1.2691 -4.1501 -3.2218 13 1 0.4080 -4.7604 -2.9499 14 6 0.8521 -3.1146 -4.2695 15 8 0.4100 -3.7860 -5.4511 16 6 1.4096 -4.5993 -6.0688 17 6 1.8491 -5.6942 -5.0932 18 6 2.3672 -5.0434 -3.8070 19 1 3.2467 -4.4403 -4.0322 20 8 2.7111 -6.0591 -2.8624 21 6 1.7643 -3.4720 1.2230 22 6 0.4631 -2.6985 1.4504 23 1 -0.4849 0.8368 -0.0738 24 1 0.0488 -2.3458 -1.6158 25 1 0.0901 -3.9695 -0.8876 26 1 2.3307 -2.6564 -2.2834 27 1 0.0411 -2.5034 -3.8738 28 1 1.7033 -2.4778 -4.5101 29 1 1.0003 -5.0573 -6.9691 30 1 2.2682 -3.9818 -6.3330 31 1 0.9999 -6.3366 -4.8600 32 1 2.6428 -6.2884 -5.5462 33 1 3.4026 -6.6623 -3.1677 34 1 1.6854 -4.5371 1.0052 35 1 2.6352 -3.1748 1.8072 36 1 0.4787 -1.8926 2.1842 37 1 -0.4718 -3.2547 1.3823 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710929734.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:59 Heat of formation + Delta-G solvation = -96.692880 kcal Electronic energy + Delta-G solvation = -18141.336186 eV Core-core repulsion = 15304.203348 eV Total energy + Delta-G solvation = -2837.132838 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.74583 -38.62901 -37.48430 -35.73705 -33.95904 -32.58618 -30.45352 -27.61277 -26.07148 -25.38574 -23.50571 -22.80344 -21.58623 -20.77535 -18.38698 -17.90375 -17.27732 -17.14684 -16.59403 -16.28370 -15.98129 -15.51454 -15.27194 -14.68434 -14.46477 -13.99214 -13.94308 -13.31190 -13.28552 -13.00744 -12.93786 -12.79755 -12.37677 -12.33109 -12.02231 -11.89134 -11.65358 -11.20426 -10.86995 -10.75770 -10.69150 -10.39573 -9.92729 -9.05078 -8.07095 -6.18930 1.42398 1.45299 1.51563 2.43787 2.76732 3.20332 3.23563 3.30913 3.69229 3.78881 3.89782 4.02621 4.12836 4.18656 4.35247 4.54611 4.59455 4.60906 4.66677 4.74623 4.79411 4.82110 4.95750 5.02154 5.05522 5.07043 5.24484 5.27950 5.65800 5.66958 5.80340 6.06841 6.35027 6.48848 6.61960 6.89610 7.05559 7.49130 9.00095 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.025206 B = 0.007033 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.580707 B = 3980.000232 C = 4539.112424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.027 3.973 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.054 0.946 9 C 0.030 3.970 10 C 0.123 3.877 11 N -0.658 5.658 12 C 0.061 3.939 13 H 0.064 0.936 14 C 0.044 3.956 15 O -0.400 6.400 16 C 0.053 3.947 17 C -0.178 4.178 18 C 0.120 3.880 19 H 0.060 0.940 20 O -0.568 6.568 21 C -0.179 4.179 22 C -0.169 4.169 23 H 0.259 0.741 24 H 0.009 0.991 25 H 0.037 0.963 26 H 0.341 0.659 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.387 0.613 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.757 -9.369 -11.675 15.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.173 4.173 3 Si 0.774 3.226 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.007 4.007 11 N -0.289 5.289 12 C -0.050 4.050 13 H 0.083 0.917 14 C -0.034 4.034 15 O -0.318 6.318 16 C -0.023 4.023 17 C -0.216 4.216 18 C 0.061 3.939 19 H 0.078 0.922 20 O -0.375 6.375 21 C -0.216 4.216 22 C -0.207 4.207 23 H 0.068 0.932 24 H 0.027 0.973 25 H 0.055 0.945 26 H 0.159 0.841 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.127 0.873 33 H 0.236 0.764 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.086 -9.509 -11.004 15.106 hybrid contribution 0.271 1.533 -0.323 1.590 sum 4.357 -7.976 -11.327 14.522 Atomic orbital electron populations 1.70096 1.07102 1.27266 1.50064 1.25656 0.95458 1.01713 0.94479 0.85784 0.78457 0.79552 0.78845 1.19285 1.21408 1.20161 1.20646 0.92967 0.90006 1.50651 0.92788 1.18875 0.97990 0.93588 0.86647 1.21182 0.91133 0.94877 0.93468 1.60439 1.22730 1.31421 1.14336 1.22241 0.97199 0.95371 0.90208 0.91737 1.23266 1.00397 0.94416 0.85354 1.87912 1.39650 1.63626 1.40597 1.22839 0.92058 0.91552 0.95821 1.22933 1.03207 0.99545 0.95950 1.21724 0.95837 0.88737 0.87632 0.92163 1.86650 1.61311 1.45015 1.44559 1.22816 0.96597 0.96341 1.05838 1.22467 0.93643 1.01348 1.03258 0.93212 0.97252 0.94496 0.84060 0.90298 0.91974 0.86398 0.91741 0.91285 0.87284 0.76378 0.90180 0.90867 0.92326 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.55 12.95 21.45 0.28 -51.28 16 2 C 0.03 1.48 5.39 84.66 0.46 1.93 16 3 Si 0.95 42.84 29.55 68.60 2.03 44.87 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.50 -27.18 8.32 25.60 0.21 -26.97 16 8 H 0.05 2.90 7.82 -2.91 -0.02 2.88 16 9 C 0.03 1.49 1.56 -52.93 -0.08 1.40 16 10 C 0.12 5.67 5.37 86.30 0.46 6.14 16 11 N -0.66 -26.23 6.15 -491.10 -3.02 -29.25 16 12 C 0.06 2.03 2.34 45.00 0.11 2.13 16 13 H 0.06 2.38 7.72 -2.39 -0.02 2.37 16 14 C 0.04 1.39 6.10 72.01 0.44 1.83 16 15 O -0.40 -11.48 10.77 -148.98 -1.60 -13.08 16 16 C 0.05 1.05 6.84 72.01 0.49 1.54 16 17 C -0.18 -3.40 5.77 30.69 0.18 -3.22 16 18 C 0.12 3.12 3.20 30.71 0.10 3.22 16 19 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 20 O -0.57 -15.70 13.25 -148.98 -1.97 -17.67 16 21 C -0.18 -8.19 9.96 30.62 0.30 -7.88 16 22 C -0.17 -8.31 9.46 30.62 0.29 -8.02 16 23 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 24 H 0.01 0.47 7.63 -2.38 -0.02 0.45 16 25 H 0.04 1.68 7.88 -2.39 -0.02 1.66 16 26 H 0.34 13.94 8.02 -89.70 -0.72 13.22 16 27 H 0.08 2.80 7.63 -2.39 -0.02 2.78 16 28 H 0.06 1.81 8.09 -2.39 -0.02 1.79 16 29 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.48 8.14 -2.38 -0.02 1.47 16 32 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.39 6.49 9.09 -74.06 -0.67 5.82 16 34 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 37 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -63.12 303.78 -1.67 -64.79 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: -0.33 Total: 29.52 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 2.96 Total: -27.89 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -2.74 Total: -80.53 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -3.58 Total: -30.75 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -63.12 -1.67 -64.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710929734.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.903 kcal (2) G-P(sol) polarization free energy of solvation -63.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds