Wall clock time and date at job start Mon Mar 30 2020 03:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86810 * 119.99775 * 2 1 4 4 H 1.48498 * 109.46680 * 274.50636 * 3 2 1 5 5 H 1.48491 * 109.46867 * 34.50765 * 3 2 1 6 6 H 1.48492 * 109.46748 * 154.50929 * 3 2 1 7 7 C 1.37878 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99901 * 4.64508 * 7 2 1 9 9 C 1.50698 * 120.00069 * 184.65262 * 7 2 1 10 10 C 1.52997 * 115.55239 * 84.88903 * 9 7 2 11 11 N 1.46900 * 109.46968 * 65.16902 * 10 9 7 12 12 C 1.46903 * 111.00224 * 185.02395 * 11 10 9 13 13 H 1.08998 * 109.57351 * 321.27885 * 12 11 10 14 14 C 1.53090 * 109.52175 * 81.43236 * 12 11 10 15 15 O 1.42902 * 109.41679 * 177.51413 * 14 12 11 16 16 C 1.42899 * 114.09770 * 298.84609 * 15 14 12 17 17 C 1.53090 * 109.42035 * 61.15499 * 16 15 14 18 18 C 1.53175 * 109.52423 * 201.11779 * 12 11 10 19 19 H 1.09009 * 109.54273 * 63.24732 * 18 12 11 20 20 O 1.42902 * 109.54507 * 302.98196 * 18 12 11 21 21 C 1.52999 * 117.49670 * 230.56446 * 9 7 2 22 22 C 1.53005 * 117.49858 * 299.22093 * 9 7 2 23 23 H 0.97000 * 120.00103 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47315 * 305.17451 * 10 9 7 25 25 H 1.09000 * 109.47345 * 185.16872 * 10 9 7 26 26 H 1.00900 * 110.99887 * 61.07062 * 11 10 9 27 27 H 1.09003 * 109.48003 * 57.53167 * 14 12 11 28 28 H 1.09004 * 109.48067 * 297.50223 * 14 12 11 29 29 H 1.08999 * 109.48137 * 181.13829 * 16 15 14 30 30 H 1.09000 * 109.48061 * 301.16224 * 16 15 14 31 31 H 1.09003 * 109.52232 * 62.29640 * 17 16 15 32 32 H 1.08994 * 109.53151 * 182.48734 * 17 16 15 33 33 H 0.96700 * 113.99931 * 180.44142 * 20 18 12 34 34 H 1.09006 * 117.49302 * 214.99905 * 21 9 7 35 35 H 1.08997 * 117.50260 * 0.02562 * 21 9 7 36 36 H 1.09002 * 117.49388 * 359.97438 * 22 9 7 37 37 H 1.08997 * 117.49736 * 144.96983 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4012 2.1015 -1.3958 5 1 1.4974 2.6233 0.7931 6 1 3.5910 1.4146 0.6025 7 6 2.0045 -1.1940 -0.0005 8 1 1.4672 -2.1277 -0.0767 9 6 3.5078 -1.1962 0.1053 10 6 4.0693 -1.1306 1.5270 11 7 3.7020 -2.3523 2.2554 12 6 4.1218 -2.2737 3.6609 13 1 5.0945 -1.7860 3.7248 14 6 3.0924 -1.4682 4.4579 15 8 3.4728 -1.4420 5.8352 16 6 3.5329 -2.7313 6.4484 17 6 4.5799 -3.5877 5.7314 18 6 4.2177 -3.6859 4.2463 19 1 4.9891 -4.2475 3.7192 20 8 2.9598 -4.3489 4.1040 21 6 4.2873 -2.0156 -0.9251 22 6 4.2947 -0.4866 -0.9984 23 1 -0.4850 0.8400 0.0004 24 1 3.6561 -0.2630 2.0413 25 1 5.1552 -1.0452 1.4852 26 1 4.0882 -3.1700 1.8078 27 1 2.1118 -1.9340 4.3604 28 1 3.0509 -0.4493 4.0728 29 1 3.8088 -2.6225 7.4973 30 1 2.5580 -3.2136 6.3771 31 1 5.5620 -3.1266 5.8371 32 1 4.5962 -4.5857 6.1691 33 1 2.9464 -5.2477 4.4604 34 1 5.2003 -2.5080 -0.5901 35 1 3.7130 -2.5527 -1.6798 36 1 3.7251 -0.0187 -1.8013 37 1 5.2122 0.0272 -0.7116 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710929740.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:00 Heat of formation + Delta-G solvation = -90.907469 kcal Electronic energy + Delta-G solvation = -18328.432623 eV Core-core repulsion = 15491.550660 eV Total energy + Delta-G solvation = -2836.881964 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.81128 -38.93743 -37.32493 -35.75914 -34.12643 -32.51578 -30.50610 -27.93259 -26.33568 -25.61418 -23.52241 -23.09805 -21.19410 -20.63438 -18.31941 -17.96720 -17.53805 -17.14384 -16.77492 -16.27401 -15.99294 -15.43708 -15.02170 -14.87736 -14.68335 -14.56889 -14.11898 -13.70057 -13.23914 -13.02882 -12.90282 -12.63073 -12.45428 -12.17196 -12.07372 -11.84717 -11.42782 -11.29235 -11.05969 -10.94070 -10.49157 -10.36171 -10.20036 -9.07712 -8.19481 -6.21706 1.35995 1.39213 1.51640 2.42530 2.75336 3.13138 3.17736 3.30152 3.53108 3.75738 3.90306 3.97628 4.05788 4.26085 4.26415 4.39400 4.49642 4.51878 4.55777 4.73229 4.74288 4.80136 4.84735 4.87441 4.93064 5.05274 5.11037 5.19159 5.44295 5.55633 5.79209 6.08503 6.36847 6.45275 6.67612 6.84922 7.00882 7.43973 8.97388 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.027454 B = 0.007522 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.653502 B = 3721.703122 C = 4056.420167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.012 3.988 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.303 1.303 6 H -0.229 1.229 7 C -0.454 4.454 8 H 0.025 0.975 9 C -0.019 4.019 10 C 0.108 3.892 11 N -0.668 5.668 12 C 0.064 3.936 13 H 0.062 0.938 14 C 0.080 3.920 15 O -0.402 6.402 16 C 0.052 3.948 17 C -0.176 4.176 18 C 0.105 3.895 19 H 0.075 0.925 20 O -0.568 6.568 21 C -0.163 4.163 22 C -0.198 4.198 23 H 0.260 0.740 24 H 0.044 0.956 25 H 0.032 0.968 26 H 0.345 0.655 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.389 0.611 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.283 -7.397 11.162 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.184 4.184 3 Si 0.762 3.238 4 H -0.201 1.201 5 H -0.231 1.231 6 H -0.152 1.152 7 C -0.492 4.492 8 H 0.044 0.956 9 C -0.020 4.020 10 C -0.021 4.021 11 N -0.301 5.301 12 C -0.046 4.046 13 H 0.079 0.921 14 C 0.003 3.997 15 O -0.321 6.321 16 C -0.024 4.024 17 C -0.214 4.214 18 C 0.046 3.954 19 H 0.093 0.907 20 O -0.376 6.376 21 C -0.200 4.200 22 C -0.236 4.236 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.165 0.835 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.238 0.762 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.382 -6.355 11.127 18.528 hybrid contribution 0.450 0.081 -0.309 0.552 sum 13.832 -6.274 10.818 18.647 Atomic orbital electron populations 1.70076 1.08346 1.27455 1.53917 1.25794 0.95175 1.02713 0.94677 0.85918 0.80591 0.78942 0.78326 1.20073 1.23073 1.15195 1.20301 0.89511 0.92126 1.47257 0.95631 1.19314 0.92032 1.02302 0.88334 1.21549 0.95041 0.92139 0.93392 1.59849 1.65190 1.04516 1.00520 1.22133 0.96962 0.96033 0.89507 0.92053 1.22286 0.97035 0.99806 0.80606 1.87870 1.90024 1.30373 1.23808 1.22755 0.98676 0.83274 0.97660 1.22864 1.00478 1.02876 0.95156 1.21951 0.86440 0.91626 0.95362 0.90680 1.86730 1.33415 1.32817 1.84597 1.22833 1.01627 0.92556 1.02985 1.23042 1.02065 0.95667 1.02779 0.93092 0.93740 0.95018 0.83550 0.94098 0.91111 0.86805 0.93292 0.89468 0.87245 0.76219 0.87760 0.90717 0.91026 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.37 13.96 21.45 0.30 -62.08 16 2 C 0.01 0.71 5.47 84.66 0.46 1.18 16 3 Si 0.94 45.91 24.94 68.60 1.71 47.62 16 4 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 6 H -0.23 -10.05 5.70 99.48 0.57 -9.48 16 7 C -0.45 -26.40 9.33 25.60 0.24 -26.16 16 8 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 9 C -0.02 -0.84 0.97 -52.93 -0.05 -0.89 16 10 C 0.11 4.31 4.92 86.30 0.42 4.73 16 11 N -0.67 -24.91 5.99 -491.11 -2.94 -27.86 16 12 C 0.06 1.98 2.46 45.00 0.11 2.09 16 13 H 0.06 1.76 7.92 -2.39 -0.02 1.74 16 14 C 0.08 2.88 6.13 72.01 0.44 3.33 16 15 O -0.40 -12.65 10.77 -148.98 -1.60 -14.25 16 16 C 0.05 1.17 6.69 72.01 0.48 1.65 16 17 C -0.18 -3.02 5.83 30.68 0.18 -2.84 16 18 C 0.11 2.42 3.18 30.71 0.10 2.52 16 19 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 20 O -0.57 -14.93 12.09 -148.98 -1.80 -16.73 16 21 C -0.16 -6.17 9.96 30.62 0.30 -5.87 16 22 C -0.20 -7.88 7.31 30.62 0.22 -7.66 16 23 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 24 H 0.04 1.96 6.07 -2.39 -0.01 1.94 16 25 H 0.03 1.08 8.09 -2.39 -0.02 1.06 16 26 H 0.34 11.77 8.47 -89.69 -0.76 11.01 16 27 H 0.04 1.69 7.82 -2.39 -0.02 1.68 16 28 H 0.07 2.77 7.24 -2.38 -0.02 2.76 16 29 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.16 7.82 -2.39 -0.02 1.15 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.39 6.06 9.08 -74.06 -0.67 5.38 16 34 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 35 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.07 3.07 7.13 -2.39 -0.02 3.05 16 37 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -73.46 292.92 -1.93 -75.39 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -0.51 Total: 25.83 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 2.92 Total: -27.93 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -2.64 Total: -89.93 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -3.41 Total: -30.98 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.71 Total: 47.62 kcal Total: -73.46 -1.93 -75.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710929740.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.522 kcal (2) G-P(sol) polarization free energy of solvation -73.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds